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PDB: 292 results

6DJM
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BU of 6djm by Molmil
Cryo-EM structure of AMPPNP-actin filaments
Descriptor: Actin, alpha skeletal muscle, MAGNESIUM ION, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Proc.Natl.Acad.Sci.USA, 116, 2019
6DJN
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BU of 6djn by Molmil
Cryo-EM structure of ADP-Pi-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Proc.Natl.Acad.Sci.USA, 116, 2019
2WYG
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BU of 2wyg by Molmil
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with monoaryl P4 motifs
Descriptor: (E)-2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-{4-[(1R)-1-(DIMETHYLAMINO)ETHYL]-2-FLUOROPHENYL}-2-OXOPYRROLIDIN-3-YL]ETHENESULFONAMIDE, ACTIVATED FACTOR XA HEAVY CHAIN, FACTOR X LIGHT CHAIN
Authors:Kleanthous, S, Borthwick, A.D, Brown, D, Burns-Kurtis, C.L, Campbell, M, Chaudry, L, Chan, C, Clarte, M, Convery, M.A, Harling, J.D, Hortense, E, Irving, W.R, Irvine, S, Pateman, A.J, Patikis, A, Pinto, I.L, Pollard, D.R, Roethka, T.J, Senger, S, Shah, G.P, Stelman, G.J, Toomey, J.R, Watson, N.S, Whittaker, C, Zhou, P, Young, R.J.
Deposit date:2009-11-16
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Monoaryl P4 Motifs
Bioorg.Med.Chem.Lett., 20, 2010
2WYJ
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BU of 2wyj by Molmil
Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with monoaryl P4 motifs
Descriptor: (E)-2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-{4-[(1S)-1-(DIMETHYLAMINO)ETHYL]-2-FLUOROPHENYL}-2-OXOPYRROLIDIN-3-YL]ETHENESULFONAMIDE, ACTIVATED FACTOR XA HEAVY CHAIN, FACTOR X LIGHT CHAIN
Authors:Kleanthous, S, Borthwick, A.D, Brown, D, Burns-Kurtis, C.L, Campbell, M, Chaudry, L, Chan, C, Clarte, M, Convery, M.A, Harling, J.D, Hortense, E, Irving, W.R, Irvine, S, Pateman, A.J, Patikis, A, Pinto, I.L, Pollard, D.R, Roethka, T.J, Senger, S, Shah, G.P, Stelman, G.J, Toomey, J.R, Watson, N.S, Whittaker, C, Zhou, P, Young, R.J.
Deposit date:2009-11-16
Release date:2010-12-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Monoaryl P4 Motifs
Bioorg.Med.Chem.Lett., 20, 2010
8E9B
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BU of 8e9b by Molmil
Cryo-EM structure of S. pombe Arp2/3 complex in the branch junction
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Chou, S.Z, Pollard, T.P.
Deposit date:2022-08-26
Release date:2023-02-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Mechanism of actin filament branch formation by Arp2/3 complex revealed by a high-resolution cryo-EM structureof the branch junction.
Proc.Natl.Acad.Sci.USA, 119, 2022
7K21
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BU of 7k21 by Molmil
Cryo-EM structure of pyrene-labeled ADP-Pi-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2020-09-08
Release date:2020-11-04
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments.
Nat Commun, 11, 2020
7K20
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BU of 7k20 by Molmil
Cryo-EM structure of pyrene-labeled ADP-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2020-09-08
Release date:2020-11-04
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments.
Nat Commun, 11, 2020
8DOA
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BU of 8doa by Molmil
Solution structure of a model HEEH mini-protein (HEEH_TK_rd5_0958)
Descriptor: HEEH mini-protein TK_rd5_0958
Authors:Houliston, S, Kim, T.-E, Rocklin, G, Arrowsmith, C.H.
Deposit date:2022-07-12
Release date:2022-10-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentation.
Proc.Natl.Acad.Sci.USA, 119, 2022
3HYP
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BU of 3hyp by Molmil
Crystal structure of Bacteroides fragilis TrxP_S105G mutant
Descriptor: Thioredoxin, ZINC ION
Authors:Shouldice, S.R.
Deposit date:2009-06-22
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:In vivo oxidative protein folding can be facilitated by oxidation-reduction cycling
Mol.Microbiol., 75, 2010
3HXS
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BU of 3hxs by Molmil
Crystal Structure of Bacteroides fragilis TrxP
Descriptor: Thioredoxin, ZINC ION
Authors:Shouldice, S.R.
Deposit date:2009-06-22
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:In vivo oxidative protein folding can be facilitated by oxidation-reduction cycling
Mol.Microbiol., 75, 2010
1Q35
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BU of 1q35 by Molmil
Crystal Structure of Pasteurella haemolytica Apo Ferric ion-Binding Protein A
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, iron binding protein FbpA
Authors:Shouldice, S.R, Dougan, D.R, Skene, R.J, Snell, G, Scheibe, D, Williams, P.A, Kirby, S, McRee, D.E, Schryvers, A.B, Tari, L.W.
Deposit date:2003-07-28
Release date:2003-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of Pasteurella haemolytica ferric ion-binding protein A reveals a novel class of bacterial iron-binding proteins
J.Biol.Chem., 278, 2003
5UP1
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BU of 5up1 by Molmil
Solution structure of the de novo mini protein EEHEE_rd3_1049
Descriptor: EEHEE_rd3_1049
Authors:Houliston, S, Rocklin, G.J, Lemak, A, Carter, L, Chidyausiku, T.M, Baker, D, Arrowsmith, C.H.
Deposit date:2017-02-01
Release date:2017-07-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global analysis of protein folding using massively parallel design, synthesis, and testing.
Science, 357, 2017
3KN7
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BU of 3kn7 by Molmil
Crystal Structure of Haemophilus influenzae Y195A mutant Holo Ferric ion-Binding Protein A
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, PHOSPHATE ION
Authors:Shouldice, S.R, Schryvers, A.B.
Deposit date:2009-11-12
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:The role of vicinal tyrosine residues in the function of Haemophilus influenzae ferric binding protein A.
Biochem.J., 2010
4F4M
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BU of 4f4m by Molmil
Structure of the type VI peptidoglycan amidase effector Tse1 (C30A) from Pseudomonas aeruginosa
Descriptor: papain peptidoglycan amidase effector Tse1
Authors:Chou, S, Mougous, J.D.
Deposit date:2012-05-10
Release date:2012-05-30
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.677 Å)
Cite:Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
Cell Rep, 1, 2012
4EOB
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BU of 4eob by Molmil
Structure of the type VI peptidoglycan amidase effector Tse1 from Pseudomonas aeruginosa
Descriptor: type VI amidase effector Tse1
Authors:Chou, S, Mougous, J.D.
Deposit date:2012-04-13
Release date:2012-05-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
Cell Rep, 1, 2012
3KN8
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BU of 3kn8 by Molmil
Crystal Structure of Haemophilus influenzae Y196A mutant Holo Ferric ion-Binding Protein A
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, PHOSPHATE ION
Authors:Shouldice, S.R, Schryvers, A.B.
Deposit date:2009-11-12
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The role of vicinal tyrosine residues in the function of Haemophilus influenzae ferric binding protein A.
Biochem.J., 2010
3M4U
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BU of 3m4u by Molmil
Crystal Structure of Trypanosoma brucei Protein Tyrosine Phosphatase TbPTP1
Descriptor: PHOSPHATE ION, Tyrosine specific protein phosphatase, putative
Authors:Chou, S, Alber, T, Grundner, C.
Deposit date:2010-03-12
Release date:2010-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:The Trypanosoma brucei life cycle switch TbPTP1 is structurally conserved and dephosphorylates the nucleolar protein NOPP44/46.
J.Biol.Chem., 285, 2010
5UOI
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BU of 5uoi by Molmil
Solution structure of the de novo mini protein HHH_rd1_0142
Descriptor: HHH_rd1_0142
Authors:Houliston, S, Rocklin, G.J, Lemak, A, Carter, L, Chidyausiku, T.M, Baker, D, Arrowsmith, C.H.
Deposit date:2017-01-31
Release date:2017-07-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global analysis of protein folding using massively parallel design, synthesis, and testing.
Science, 357, 2017
1NNF
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BU of 1nnf by Molmil
Crystal Structure Analysis of Haemophlius Influenzae Ferric-ion Binding Protein H9Q Mutant Form
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
Authors:Shouldice, S.R, Dougan, D.R, Skene, R.J, Tari, L.W, McRee, D.E, Yu, R.-H, Schryvers, A.B.
Deposit date:2003-01-13
Release date:2003-04-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High Resolution Structure of an Alternate Form of the Ferric ion Binding Protein from Haemophilus influenzae
J.Biol.Chem., 278, 2003
5UP5
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BU of 5up5 by Molmil
Solution structure of the de novo mini protein EHEE_rd1_0284
Descriptor: EHEE_rd1_0284
Authors:Houliston, S, Rocklin, G.J, Lemak, A, Carter, L, Chidyausiku, T.M, Baker, D, Arrowsmith, C.H.
Deposit date:2017-02-01
Release date:2017-07-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global analysis of protein folding using massively parallel design, synthesis, and testing.
Science, 357, 2017
3H93
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BU of 3h93 by Molmil
Crystal Structure of Pseudomonas aeruginosa DsbA
Descriptor: GLYCEROL, Thiol:disulfide interchange protein dsbA
Authors:Shouldice, S.R.
Deposit date:2009-04-29
Release date:2009-12-08
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Characterization of the DsbA Oxidative Folding Catalyst from Pseudomonas aeruginosa Reveals a Highly Oxidizing Protein that Binds Small Molecules.
Antioxid Redox Signal, 12, 2010
1QVS
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BU of 1qvs by Molmil
Crystal Structure of Haemophilus influenzae H9A mutant Holo Ferric ion-Binding Protein A
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, PHOSPHATE ION
Authors:Shouldice, S.R, Skene, R.J, Dougan, D.R, McRee, D.E, Tari, L.W, Schryvers, A.B.
Deposit date:2003-08-28
Release date:2003-11-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Presence of ferric hydroxide clusters in mutants of Haemophilus influenzae ferric ion-binding protein A
Biochemistry, 42, 2003
1QW0
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BU of 1qw0 by Molmil
Crystal Structure of Haemophilus influenzae N175L mutant Holo Ferric ion-Binding Protein A
Descriptor: FE (III) ION, Iron-utilization periplasmic protein, PHOSPHATE ION
Authors:Shouldice, S.R, Skene, R.J, Dougan, D.R, McRee, D.E, Tari, L.W, Schryvers, A.B.
Deposit date:2003-08-29
Release date:2003-11-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Presence of ferric hydroxide clusters in mutants of Haemophilus influenzae ferric ion-binding protein A
Biochemistry, 42, 2003
3CS4
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BU of 3cs4 by Molmil
Structure-based design of a superagonist ligand for the vitamin D nuclear receptor
Descriptor: (1S,3R,5Z,7E,14beta,17alpha)-17-[(2S,4S)-4-(2-hydroxy-2-methylpropyl)-2-methyltetrahydrofuran-2-yl]-9,10-secoandrosta-5,7,10-triene-1,3-diol, Vitamin D3 receptor
Authors:Hourai, S, Rodriguez, L.C, Antony, P, Reina-San-Martin, B, Ciesielski, F, Magnier, B.C, Schoonjans, K, Mourino, A, Rochel, N, Moras, D.
Deposit date:2008-04-09
Release date:2008-05-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based design of a superagonist ligand for the vitamin d nuclear receptor.
Chem.Biol., 15, 2008
1L1V
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BU of 1l1v by Molmil
UNUSUAL ACTD/DNA_TA COMPLEX STRUCTURE
Descriptor: 5'-D(*GP*TP*CP*AP*CP*CP*GP*AP*C)-3', ACTINOMYCIN D
Authors:Chou, S.-H, Chin, K.-H, Chen, F.-M.
Deposit date:2002-02-20
Release date:2002-03-06
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Looped Out and Perpendicular: Deformation of Watson-Crick Base Pair Associated with Actinomycin D Binding.
Proc.Natl.Acad.Sci.USA, 99, 2002

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