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PDB: 58 results

175D
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THE DNA SEQUENCE GCGAATGAGC CONTAINING THE HUMAN CENTROMERE CORE SEQUENCE GAAT FORMS A SELF-COMPLEMENTARY DUPLEX WITH SHEARED G:A PAIRS IN SOLUTION
Descriptor: DNA (5'-D(*GP*CP*GP*AP*AP*TP*GP*AP*GP*C)-3')
Authors:Chou, S.-H, Cheng, J.-W, Fedoroff, O, Reid, B.R.
Deposit date:1994-04-29
Release date:1994-09-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G.A pairs in solution.
J.Mol.Biol., 241, 1994
103D
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THE UNUSUAL STRUCTURE OF THE HUMAN CENTROMERE (GGA)2 MOTIF: UNPAIRED GUANOSINE RESIDUES STACKED BETWEEN SHEARED G(DOT)A PAIRS
Descriptor: DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*GP*AP*AP*C)-3')
Authors:Chou, S.-H, Zhu, L, Reid, B.R.
Deposit date:1994-12-16
Release date:1995-03-31
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:The unusual structure of the human centromere (GGA)2 motif. Unpaired guanosine residues stacked between sheared G.A pairs.
J.Mol.Biol., 244, 1994
1D69
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SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2: ADJACENT G:A MISMATCHES STABILIZED BY CROSS-STRAND BASE-STACKING AND BII PHOSPHATE GROUPS
Descriptor: DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')
Authors:Chou, S.-H, Cheng, J.-W, Reid, B.R.
Deposit date:1992-04-15
Release date:1993-04-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups.
J.Mol.Biol., 228, 1992
1BJH
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HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES
Descriptor: DNA (5'-D(*GP*TP*AP*CP*AP*AP*AP*GP*TP*AP*C)-3')
Authors:Chou, S.-H, Zhu, L, Gao, Z, Cheng, J.-W, Reid, B.R.
Deposit date:1997-07-25
Release date:1997-12-03
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Hairpin loops consisting of single adenine residues closed by sheared A.A and G.G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin.
J.Mol.Biol., 264, 1996
8E9B
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Cryo-EM structure of S. pombe Arp2/3 complex in the branch junction
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Chou, S.Z, Pollard, T.P.
Deposit date:2022-08-26
Release date:2023-02-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Mechanism of actin filament branch formation by Arp2/3 complex revealed by a high-resolution cryo-EM structureof the branch junction.
Proc.Natl.Acad.Sci.USA, 119, 2022
1L1V
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UNUSUAL ACTD/DNA_TA COMPLEX STRUCTURE
Descriptor: 5'-D(*GP*TP*CP*AP*CP*CP*GP*AP*C)-3', ACTINOMYCIN D
Authors:Chou, S.-H, Chin, K.-H, Chen, F.-M.
Deposit date:2002-02-20
Release date:2002-03-06
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Looped Out and Perpendicular: Deformation of Watson-Crick Base Pair Associated with Actinomycin D Binding.
Proc.Natl.Acad.Sci.USA, 99, 2002
7K21
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Cryo-EM structure of pyrene-labeled ADP-Pi-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2020-09-08
Release date:2020-11-04
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments.
Nat Commun, 11, 2020
4EOB
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Structure of the type VI peptidoglycan amidase effector Tse1 from Pseudomonas aeruginosa
Descriptor: type VI amidase effector Tse1
Authors:Chou, S, Mougous, J.D.
Deposit date:2012-04-13
Release date:2012-05-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
Cell Rep, 1, 2012
4F4M
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Structure of the type VI peptidoglycan amidase effector Tse1 (C30A) from Pseudomonas aeruginosa
Descriptor: papain peptidoglycan amidase effector Tse1
Authors:Chou, S, Mougous, J.D.
Deposit date:2012-05-10
Release date:2012-05-30
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.677 Å)
Cite:Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
Cell Rep, 1, 2012
3M4U
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Crystal Structure of Trypanosoma brucei Protein Tyrosine Phosphatase TbPTP1
Descriptor: PHOSPHATE ION, Tyrosine specific protein phosphatase, putative
Authors:Chou, S, Alber, T, Grundner, C.
Deposit date:2010-03-12
Release date:2010-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:The Trypanosoma brucei life cycle switch TbPTP1 is structurally conserved and dephosphorylates the nucleolar protein NOPP44/46.
J.Biol.Chem., 285, 2010
6DJO
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Cryo-EM structure of ADP-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Proc.Natl.Acad.Sci.USA, 116, 2019
6DJM
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Cryo-EM structure of AMPPNP-actin filaments
Descriptor: Actin, alpha skeletal muscle, MAGNESIUM ION, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Proc.Natl.Acad.Sci.USA, 116, 2019
6DJN
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Cryo-EM structure of ADP-Pi-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2018-05-25
Release date:2019-02-27
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Proc.Natl.Acad.Sci.USA, 116, 2019
7K20
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Cryo-EM structure of pyrene-labeled ADP-actin filaments
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chou, S.Z, Pollard, T.D.
Deposit date:2020-09-08
Release date:2020-11-04
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments.
Nat Commun, 11, 2020
3MHX
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BU of 3mhx by Molmil
Crystal Structure of Stenotrophomonas maltophilia FeoA complexed with Zinc: A Unique Procaryotic SH3 Domain Protein Possibly Acting as a Bacterial Ferrous Iron Transport Activating Factor
Descriptor: ACETATE ION, CHLORIDE ION, Putative ferrous iron transport protein A, ...
Authors:Chou, S.-H, Su, Y.-C, Chin, K.-H, Hung, H.-C, Shen, G.-H, Wang, A.H.-J.
Deposit date:2010-04-09
Release date:2010-06-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of Stenotrophomonas maltophilia FeoA complexed with zinc: a unique prokaryotic SH3-domain protein that possibly acts as a bacterial ferrous iron-transport activating factor
Acta Crystallogr.,Sect.F, 66, 2010
6WIN
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Type 6 secretion amidase effector 2 (Tae2)
Descriptor: Type 6 secretion amidase effector 2
Authors:Chou, S, Radkov, A.D.
Deposit date:2020-04-10
Release date:2020-04-22
Last modified:2021-05-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Ticks Resist Skin Commensals with Immune Factor of Bacterial Origin.
Cell, 183, 2020
3RMR
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BU of 3rmr by Molmil
Crystal structure of Hyaloperonospora arabidopsidis ATR1 effector domain
Descriptor: Avirulence protein
Authors:Chou, S, Krasileva, K.V, Holton, J.M, Staskawicz, B.J, Alber, T.
Deposit date:2011-04-21
Release date:2011-07-20
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Hyaloperonospora arabidopsidis ATR1 effector has distributed recognition surfaces and a structural subdomain conserved across oomycete species
To be Published
8UXW
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Arp2/3 branch junction complex, ADP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Chavali, S.S, Chou, S.Z, Sindelar, C.V.
Deposit date:2023-11-11
Release date:2024-01-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Nat Commun, 15, 2024
8UXX
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Arp2/3 branch junction complex, BeFx state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Chavali, S.S, Chou, S.Z, Sindelar, C.V.
Deposit date:2023-11-11
Release date:2024-01-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Nat Commun, 15, 2024
8UZ1
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Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chavali, S.S, Chou, S.Z, Sindelar, C.V.
Deposit date:2023-11-14
Release date:2024-01-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Nat Commun, 15, 2024
8UZ0
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Straight actin filament from Arp2/3 branch junction sample (ADP)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chavali, S.S, Chou, S.Z, Sindelar, C.V.
Deposit date:2023-11-14
Release date:2024-01-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Nat Commun, 15, 2024
1C11
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INTERCALATED D(TCCCGTTTCCA) DIMER, NMR, 7 STRUCTURES
Descriptor: DNA (5'-D(*TP*CP*CP*CP*GP*TP*TP*TP*CP*CP*A)-3')
Authors:Gallego, J, Chou, S.H, Reid, B.R.
Deposit date:1998-07-15
Release date:1998-07-22
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer.
J.Mol.Biol., 273, 1997
4YP1
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Misting with CDA
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of interferon genes protein
Authors:Chin, K.H, Chen, C.K, Tu, Z.I, Chou, S.H.
Deposit date:2015-03-12
Release date:2015-10-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK.
Biochemistry, 54, 2015
7TVH
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Hyperlytic variant of Tae1, Type VI secretion amidase effector 1, from Pseudomonas aeruginosa (Cys110Ser)
Descriptor: Peptidoglycan amidase Tse1
Authors:Radkov, A, Saunders, H, Chou, S.
Deposit date:2022-02-04
Release date:2022-07-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Antibacterial potency of type VI amidase effector toxins is dependent on substrate topology and cellular context.
Elife, 11, 2022
4YS2
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RCK domain with CDA
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Na+/H+ antiporter-like protein
Authors:Chin, K.H, Chou, S.H.
Deposit date:2015-03-16
Release date:2016-04-27
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.968 Å)
Cite:RCK domain with CDA
To Be Published

 

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