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PDB: 138 results

5Y2Q
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X-ray structure of acetylcholine binding protein (AChBP) complexed with a small molecule
Descriptor: 3-[[4-[(3,4-dichlorophenyl)methyl]piperidin-4-yl]methoxy]pyridine, Acetylcholine-binding protein
Authors:Jiang, L.L, Zhou, L.
Deposit date:2017-07-26
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.363 Å)
Cite:X-ray structure of acetylcholine binding protein (AChBP) complexed with a small molecule
To Be Published
5EB0
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crystal form II of YfiB belonging to P41
Descriptor: SULFATE ION, YfiB
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5EB2
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Trp-bound YfiR
Descriptor: SULFATE ION, TRYPTOPHAN, YfiR
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.709 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5Y2U
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X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ALIZARIN RED, CHLORIDE ION, ...
Authors:Jiang, L.L, Zhou, L.
Deposit date:2017-07-27
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule
To Be Published
5Y35
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Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Phosphoglycerate mutase 1, ...
Authors:Jiang, L.L, Zhou, L.
Deposit date:2017-07-27
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1
To Be Published
5Y65
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Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Phosphoglycerate mutase 1, ...
Authors:Jiang, L.L, Zhou, L.
Deposit date:2017-08-10
Release date:2018-12-05
Method:X-RAY DIFFRACTION (2.554 Å)
Cite:Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2
To Be Published
5E84
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ATP-bound state of BiP
Descriptor: 78 kDa glucose-regulated protein, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2016-01-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
5EB1
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the YfiB-YfiR complex
Descriptor: SULFATE ION, YfiB, YfiR
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5ZRM
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Phosphoglycerate mutase 1 complexed with a small molecule inhibitor In-AC
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracen-2-yl)sulfamoyl]phenyl acetate, CHLORIDE ION, ...
Authors:Jiang, L.L, Zhou, L.
Deposit date:2018-04-24
Release date:2019-05-01
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Phosphoglycerate mutase 1 complexed with a small molecule inhibitor In-AC
To Be Published
5EB3
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VB6-bound protein
Descriptor: 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol, SULFATE ION, YfiR
Authors:Xu, M, Yang, X, Yang, X.-A, Zhou, L, Liu, T.-Z, Fan, Z, Jiang, T.
Deposit date:2015-10-17
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Protein Cell, 7, 2016
5ZS7
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BU of 5zs7 by Molmil
Acetylation of lysine 100 in Phosphoglycerate mutase 1
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Phosphoglycerate mutase 1
Authors:Jiang, L.L, Zhou, L.
Deposit date:2018-04-28
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Acetylation of lysine 100 in Phosphoglycerate mutase 1
To Be Published
5ZS8
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Acetylation of lysine 100 of Phosphoglycerate mutase 1 complexed with KH_ol
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, N-(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracen-2-yl)-2-hydroxybenzene-1-sulfonamide, ...
Authors:Jiang, L.L, Zhou, L.
Deposit date:2018-04-28
Release date:2019-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Acetylation of lysine 100 of Phosphoglycerate mutase 1 complexed with KH_ol
To Be Published
5Y2I
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Phosphoglycerate mutase 1 (PGAM1) complexed with its inhibitor PGMI-004A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)-~{N}-[4-(trifluoromethyl)phenyl]anthracene-2-sulfonamide, CHLORIDE ION, ...
Authors:Jiang, L, Zhou, L.
Deposit date:2017-07-26
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.917 Å)
Cite:Phosphoglycerate mutase 1 (PGAM1) complexed with its inhibitor PGMI-004A
To Be Published
5W96
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BU of 5w96 by Molmil
Solution structure of phage derived peptide inhibitor of frizzled 7 receptor
Descriptor: Fz7 binding peptide
Authors:Nile, A.H, de Sousa e Melo, F, Mukund, S, Piskol, R, Hansen, S, Zhou, L, Zhang, Y, Fu, Y, Gogol, E.B, Komuves, L.G, Modrusan, Z, Angers, S, Franke, Y, Koth, C, Fairbrother, W.J, Wang, W, de Sauvage, F.J, Hannoush, R.N.
Deposit date:2017-06-22
Release date:2018-04-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A selective peptide inhibitor of Frizzled 7 receptors disrupts intestinal stem cells.
Nat. Chem. Biol., 14, 2018
5E86
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isolated SBD of BiP with loop34 modification
Descriptor: 78 kDa glucose-regulated protein
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2015-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.681 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
5E85
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BU of 5e85 by Molmil
isolated SBD of BiP
Descriptor: 78 kDa glucose-regulated protein, SULFATE ION
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2015-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
7FC0
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BU of 7fc0 by Molmil
Reconstitution of MbnABC complex from Rugamonas rubra ATCC-43154 (GroupIII)
Descriptor: FE (III) ION, Methanobactin biosynthesis cassette protein MbnB, Methanobactin biosynthesis cassette protein MbnC, ...
Authors:Chao, D, Zhaolin, L, Shoujie, L, Li, Z, Dan, Z, Ying, J, Wei, C.
Deposit date:2021-07-13
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.643 Å)
Cite:Crystal structure and catalytic mechanism of the MbnBC holoenzyme required for methanobactin biosynthesis.
Cell Res., 32, 2022
8FEQ
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BU of 8feq by Molmil
16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs
Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
8FER
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BU of 8fer by Molmil
16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs
Descriptor: RNA 16mer with two continuous s(2)U
Authors:Fang, Z, Zhou, L, Szostak, J.W.
Deposit date:2022-12-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
7A0E
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BU of 7a0e by Molmil
The Crystal Structure of Bovine Thrombin in complex with Hirudin (C6U/C14U) at 1.9 Angstroms Resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hirudin variant-1, Prothrombin, ...
Authors:Hidmi, T, Mousa, R, Pomyalov, S, Lansky, S, Khouri, L, Metanis, N, Shoham, G.
Deposit date:2020-08-07
Release date:2021-03-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Diselenide crosslinks for enhanced and simplified oxidative protein folding
Commun Chem, 4, 2021
7A0D
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BU of 7a0d by Molmil
The Crystal Structure of Bovine Thrombin in complex with Hirudin (C16U/C28U) at 1.6 Angstroms Resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hirudin variant-1, Prothrombin, ...
Authors:Hidmi, T, Mousa, R, Pomyalov, S, Lansky, S, Khouri, L, Metanis, N, Shoham, G.
Deposit date:2020-08-07
Release date:2021-03-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Diselenide crosslinks for enhanced and simplified oxidative protein folding
Commun Chem, 4, 2021
7A0F
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BU of 7a0f by Molmil
The Crystal Structure of Bovine Thrombin in complex with Hirudin (C22U/C39U) at 2.7 Angstroms Resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hirudin variant-1, Prothrombin, ...
Authors:Hidmi, T, Mousa, R, Pomyalov, S, Lansky, S, Khouri, L, Metanis, N, Shoham, G.
Deposit date:2020-08-07
Release date:2021-03-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Diselenide crosslinks for enhanced and simplified oxidative protein folding
Commun Chem, 4, 2021
6FW4
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BU of 6fw4 by Molmil
Protein-protein interactions and conformational changes : Importance of the hydrophobic cavity of TolA C-terminal domain
Descriptor: TolA protein
Authors:Navarro, R, van Heijenoort, C, Bornet, O, Houot, L, Lloubes, R, Guerlesquin, F, Nouailler, M.
Deposit date:2018-03-05
Release date:2019-03-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Induced fit conformational changes of Vibrio cholerae TolAIII domain during the complex formation with the viral PIIIN1 domain: Structural and High-pressure NMR studies.
To Be Published
4FZO
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BU of 4fzo by Molmil
Crystal Structure of the apo-form uranyl binding protein
Descriptor: uranyl binding protein
Authors:He, C, Zhou, L, Zhang, L.
Deposit date:2012-07-06
Release date:2013-12-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A protein engineered to bind uranyl selectively and with femtomolar affinity.
Nat Chem, 6, 2014
4JNE
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BU of 4jne by Molmil
Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Hsp70 CHAPERONE DnaK, ...
Authors:Qi, R, Sarbeng, E.B, Liu, Q, Le, K.Q, Xu, X, Xu, H, Yang, J, Wong, J.L, Vorvis, C, Hendrickson, W.A, Zhou, L, Liu, Q.
Deposit date:2013-03-15
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP.
Nat.Struct.Mol.Biol., 20, 2013

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PDB entries from 2024-07-17

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