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PDB: 99 results

8IMM
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BU of 8imm by Molmil
Rs2'I-Rs2'II, Rs1'I-Rs1'II, Rb'I-Rb'II cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster E)
Descriptor: CpcA, CpcB, CpcD, ...
Authors:Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y.
Deposit date:2023-03-07
Release date:2023-10-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:A structure of the relict phycobilisome from a thylakoid-free cyanobacterium.
Nat Commun, 14, 2023
8IMO
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BU of 8imo by Molmil
Rt1'I-Rt1'II, Rt2I-Rt2II, Rt3'I-Rt3'II cylinder in cyanobacterial phycobilisome from Anthocerotibacter panamensis (Cluster G)
Descriptor: CpcA, CpcB, CpcD, ...
Authors:Wang, C.H, Yang, C.H, Wu, H.Y, Jiang, H.W, Ho, M.C, Ho, M.Y.
Deposit date:2023-03-07
Release date:2023-10-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:A structure of the relict phycobilisome from a thylakoid-free cyanobacterium.
Nat Commun, 14, 2023
6PNJ
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BU of 6pnj by Molmil
Structure of Photosystem I Acclimated to Far-red Light
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Gisriel, C.J, Shen, G, Kurashov, V, Ho, M, Zhang, S, Williams, D, Golbeck, J.H, Fromme, P, Bryant, D.A.
Deposit date:2019-07-02
Release date:2020-02-12
Last modified:2020-02-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The structure of Photosystem I acclimated to far-red light illuminates an ecologically important acclimation process in photosynthesis
Sci Adv, 6, 2020
7T62
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BU of 7t62 by Molmil
GPC2 HEP CT3 complex
Descriptor: CT3, Glypican-2
Authors:Zhu, J, Cachau, R, De Val Alda, N, Li, N, Ho, M.
Deposit date:2021-12-13
Release date:2021-12-22
Method:ELECTRON MICROSCOPY (21 Å)
Cite:CAR T cells targeting tumor-associated exons of glypican 2 regress neuroblastoma in mice.
Cell Rep Med, 2, 2021
3WRF
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BU of 3wrf by Molmil
The crystal structure of native HypBA1 from Bifidobacterium longum JCM 1217
Descriptor: Non-reducing end beta-L-arabinofuranosidase
Authors:Huang, C.H, Zhu, Z, Cheng, Y.S, Chan, H.C, Ko, T.P, Chen, C.C, Wang, I, Ho, M.R, Hsu, S.T, Zeng, Y.F, Huang, Y.N, Liu, J.R, Guo, R.T.
Deposit date:2014-02-25
Release date:2014-09-03
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure and Catalytic Mechanism of a Glycoside Hydrolase Family-127 beta-L-Arabinofuranosidase (HypBA1)
J BIOPROCESS BIOTECH, 4, 2014
3EWC
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BU of 3ewc by Molmil
Crystal Structure of adenosine deaminase from Plasmodial vivax in complex with MT-coformycin
Descriptor: (8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol, Adenosine deaminase, ZINC ION
Authors:Schramm, V.L, Almo, S.C, Cassera, M.B, Ho, M.C.
Deposit date:2008-10-14
Release date:2009-09-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural and metabolic specificity of methylthiocoformycin for malarial adenosine deaminases.
Biochemistry, 48, 2009
7S3D
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BU of 7s3d by Molmil
Structure of photosystem I with bound ferredoxin from Synechococcus sp. PCC 7335 acclimated to far-red light
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2Fe-2S ferredoxin-type domain-containing protein, ...
Authors:Gisriel, C.J, Flesher, D.A, Shen, G, Wang, J, Ho, M, Brudvig, G.W, Bryant, D.A.
Deposit date:2021-09-05
Release date:2021-11-24
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Structure of a photosystem I-ferredoxin complex from a marine cyanobacterium provides insights into far-red light photoacclimation.
J.Biol.Chem., 298, 2021
8JC7
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BU of 8jc7 by Molmil
Cryo-EM structure of Vibrio campbellii alpha-hemolysin
Descriptor: CALCIUM ION, Hemolysin, POTASSIUM ION
Authors:Wang, C.H, Yeh, M.K, Ho, M.C, Lin, S.M.
Deposit date:2023-05-10
Release date:2023-09-27
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.06 Å)
Cite:Structural basis for calcium-stimulating pore formation of Vibrio alpha-hemolysin.
Nat Commun, 14, 2023
7TPR
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BU of 7tpr by Molmil
Camel nanobodies 7A3 and 8A2 broadly neutralize SARS-CoV-2 variants
Descriptor: Nanobody 7A3, Nanobody 8A2, Spike glycoprotein
Authors:Butay, K.J, Zhu, J, Dandey, V.P, Hong, J, Kwon, H.J, Chen, C.Z, Duan, Z, Li, D, Ren, H, Liang, T, Martin, N, Esposito, D, Ortega-Rodriguez, U, Xu, M, Xie, H, Ho, M, Cachau, R, Borgnia, M.J.
Deposit date:2022-01-25
Release date:2022-04-20
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:Camel nanobodies broadly neutralize SARS-CoV-2 variants
bioRxiv, 2021
3LMD
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BU of 3lmd by Molmil
Crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum atcc 13032
Descriptor: Geranylgeranyl pyrophosphate synthase
Authors:Patskovsky, Y, Ho, M, Toro, R, Rutter, M, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-01-29
Release date:2010-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Geranylgeranyl Pyrophosphate Synthase from Corynebacterium Glutamicum
To be Published
5VOE
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BU of 5voe by Molmil
DesGla-XaS195A Bound to Aptamer 11F7t
Descriptor: Aptamer 11F7t (36-MER), CALCIUM ION, Coagulation factor X, ...
Authors:Gunaratne, R, Kumar, S, Frederiksen, J.W, Stayrook, S, Lohrmann, J.L, Perry, K, Chabata, C.V, Thalji, N.K, Ho, M.D, Arepally, G, Camire, R.M, Krishnaswamy, S.K, Sullenger, B.A.
Deposit date:2017-05-02
Release date:2018-06-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Combination of aptamer and drug for reversible anticoagulation in cardiopulmonary bypass.
Nat. Biotechnol., 36, 2018
8GYK
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BU of 8gyk by Molmil
CryoEM structure of the RAD51_ADP filament
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA repair protein RAD51 homolog 1, MAGNESIUM ION
Authors:Miki, Y, Luo, S.C, Ho, M.C.
Deposit date:2022-09-22
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination.
Nat Commun, 14, 2023
4U3A
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BU of 4u3a by Molmil
Crystal structure of CtCel5E
Descriptor: Endoglucanase H
Authors:Yuan, S.F, Liang, P.H, Ho, M.C.
Deposit date:2014-07-19
Release date:2015-01-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Biochemical Characterization and Structural Analysis of a Bifunctional Cellulase/Xylanase from Clostridium thermocellum
J.Biol.Chem., 290, 2015
7CGY
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BU of 7cgy by Molmil
Human DMC1 Q244M mutant of the post-synaptic complexes
Descriptor: CALCIUM ION, Meiotic recombination protein DMC1/LIM15 homolog, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Chi, H.Y, Ho, M.C, Tsai, M.D, Luo, S.C, Yeh, H.Y.
Deposit date:2020-07-03
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
7C9C
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BU of 7c9c by Molmil
Human DMC1 pre-synaptic complexes
Descriptor: CALCIUM ION, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Meiotic recombination protein DMC1/LIM15 homolog, ...
Authors:Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D.
Deposit date:2020-06-05
Release date:2020-11-25
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
7C99
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BU of 7c99 by Molmil
Human DMC1 post-synaptic complexes with mismatched dsDNA
Descriptor: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ...
Authors:Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D.
Deposit date:2020-06-05
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
7C9A
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BU of 7c9a by Molmil
Human RAD51 post-synaptic complexes mutant (V273P, D274G)
Descriptor: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ...
Authors:Chi, H.Y, Ho, M.C, Tsai, M.D, Luo, S.C, Yeh, H.Y.
Deposit date:2020-06-05
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
7C98
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BU of 7c98 by Molmil
Human DMC1 post-synaptic complexes
Descriptor: CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ...
Authors:Luo, S.C, Yeh, H.Y, Chi, P, Ho, M.C, Tsai, M.D.
Deposit date:2020-06-05
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
5YQ4
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BU of 5yq4 by Molmil
Crystal structure of kelch domain of KLHL20
Descriptor: Kelch-like protein 20
Authors:Yeh, M.C, Ho, M.C.
Deposit date:2017-11-05
Release date:2018-11-14
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The crystal structure of kelch domain of KLHL20
To Be Published
2N9W
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BU of 2n9w by Molmil
Solution NMR Structure of the membrane localization domain from the Ras/Rap1-specific endopeptidase (RRSP) of the Vibrio vulnificus multifunctional autoprocessing repeats-in-toxins (MARTX) toxin
Descriptor: RTX toxin
Authors:Hisao, G.S, Brothers, M.C, Ho, M, Wilson, B.A, Rienstra, C.M.
Deposit date:2015-12-12
Release date:2016-12-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The membrane localization domains of two distinct bacterial toxins form a 4-helix-bundle in solution.
Protein Sci., 26, 2017
2N9V
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BU of 2n9v by Molmil
Solution NMR Structure of the membrane localization domain from Pasteurella multocida toxin
Descriptor: Dermonecrotic toxin
Authors:Hisao, G.S, Brothers, M.C, Ho, M, Wilson, B.A, Rienstra, C.M.
Deposit date:2015-12-12
Release date:2016-12-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The membrane localization domains of two distinct bacterial toxins form a 4-helix-bundle in solution.
Protein Sci., 26, 2017
4X41
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BU of 4x41 by Molmil
Crystal Structure of Protein Arginine Methyltransferase PRMT8
Descriptor: Protein arginine N-methyltransferase 8, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lee, W.C, Ho, M.C.
Deposit date:2014-12-02
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Protein Arginine Methyltransferase 8: Tetrameric Structure and Protein Substrate Specificity
Biochemistry, 54, 2015
3EWD
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BU of 3ewd by Molmil
Crystal structure of adenosine deaminase mutant (delta Asp172) from Plasmodium vivax in complex with MT-coformycin
Descriptor: (8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol, Adenosine deaminase, ZINC ION
Authors:Schramm, V.L, Almo, S.C, Cassera, M.B, Ho, M.C.
Deposit date:2008-10-14
Release date:2009-09-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and metabolic specificity of methylthiocoformycin for malarial adenosine deaminases.
Biochemistry, 48, 2009
7XDG
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BU of 7xdg by Molmil
Cryo-EM structures of human mitochondrial NAD(P)+-dependent malic enzyme in a ternary complex with NAD+ and allosteric inhibitor MDSA
Descriptor: 5-[(3-carboxy-4-oxidanyl-phenyl)methyl]-2-oxidanyl-benzoic acid, NAD-dependent malic enzyme, mitochondrial, ...
Authors:Wang, C.H, Hsieh, J.T, Ho, M.C, Hung, H.C.
Deposit date:2022-03-27
Release date:2023-03-29
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Suppression of the human malic enzyme 2 modifies energy metabolism and inhibits cellular respiration
Commun Biol, 6, 2023
7XDF
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BU of 7xdf by Molmil
Cryo-EM structures of human mitochondrial NAD(P)+-dependent malic enzyme in a ternary complex with NAD+ and allosteric inhibitor EA
Descriptor: 4-[(3-carboxy-2-oxidanyl-naphthalen-1-yl)methyl]-3-oxidanyl-naphthalene-2-carboxylic acid, NAD-dependent malic enzyme, mitochondrial, ...
Authors:Wang, C.H, Hsieh, J.T, Ho, M.C, Hung, H.C.
Deposit date:2022-03-27
Release date:2023-03-29
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Suppression of the human malic enzyme 2 modifies energy metabolism and inhibits cellular respiration
Commun Biol, 6, 2023

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數據於2024-07-24公開中

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