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PDB: 126 results

1IEF
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BU of 1ief by Molmil
CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT S134A OF THE HUMAN CYTOMEGALOVIRUS PROTEASE
Descriptor: CAPSID PROTEIN P40: ASSEMBLIN PROTEASE
Authors:Khayat, R, Batra, R, Massariol, M.J, Lagace, L, Tong, L.
Deposit date:2001-04-09
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Investigating the role of histidine 157 in the catalytic activity of human cytomegalovirus protease.
Biochemistry, 40, 2001
1NJT
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BU of 1njt by Molmil
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
Descriptor: CHLORIDE ION, Capsid protein P40, Peptidomimetic Inhibitor
Authors:Khayat, R, Batra, R, Qian, C, Halmos, T, Bailey, M, Tong, L.
Deposit date:2003-01-02
Release date:2003-02-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Biochemistry, 42, 2003
1IED
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BU of 1ied by Molmil
CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT (H157E) OF THE HUMAN CYTOMEGALOVIRUS PROTEASE
Descriptor: CAPSID PROTEIN P40: ASSEMBLIN PROTEASE
Authors:Khayat, R, Batra, R, Massariol, M.J, Lagace, L, Tong, L.
Deposit date:2001-04-09
Release date:2001-06-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Investigating the role of histidine 157 in the catalytic activity of human cytomegalovirus protease.
Biochemistry, 40, 2001
6E2R
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BU of 6e2r by Molmil
Mechanism of cellular recognition by PCV2
Descriptor: Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-12
Release date:2018-12-26
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E32
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BU of 6e32 by Molmil
Capsid protein of PCV2 with N,O6-DISULFO-GLUCOSAMINE
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-13
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E34
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BU of 6e34 by Molmil
Capsid protein of PCV2 with N,O6-DISULFO-GLUCOSAMINE and 2-O-sulfo-alpha-L-idopyranuronic acid
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-13
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E39
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BU of 6e39 by Molmil
Capsid protein of PCV2 with 2-O-sulfo-alpha-L-idopyranuronic acid and N,O6-DISULFO-GLUCOSAMINE
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-13
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E30
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BU of 6e30 by Molmil
Mechanism of cellular recognition by PCV2
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-12
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
1NKM
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BU of 1nkm by Molmil
Complex structure of HCMV Protease and a peptidomimetic inhibitor
Descriptor: Assemblin, N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
Authors:Khayat, R, Batra, R, Qian, C, Halmos, T, Bailey, M, Tong, L.
Deposit date:2003-01-03
Release date:2003-02-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Biochemistry, 42, 2003
1NKK
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BU of 1nkk by Molmil
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
Descriptor: Capsid protein P40, Peptidomimetic inhibitor
Authors:Khayat, R, Batra, R, Qian, C, Halmos, T, Bailey, M, Tong, L.
Deposit date:2003-01-03
Release date:2003-02-11
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Biochemistry, 42, 2003
1NJU
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BU of 1nju by Molmil
Complex structure of HCMV Protease and a peptidomimetic inhibitor
Descriptor: Assemblin, N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl-L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)-1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~-dimethyl-L-aspartamide
Authors:Khayat, R, Batra, R, Qian, C, Halmos, T, Bailey, M, Tong, L.
Deposit date:2003-01-02
Release date:2003-02-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Biochemistry, 42, 2003
6DZU
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BU of 6dzu by Molmil
Mechanism of cellular recognition by PCV2
Descriptor: Putative capsid protein
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-05
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of Porcine Circovirus 2 at 3.2 Angstroms resolution
To be published
6E2X
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BU of 6e2x by Molmil
Mechanism of cellular recognition by PCV2
Descriptor: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-12
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
6E2Z
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BU of 6e2z by Molmil
Mechanism of cellular recognition by PCV2
Descriptor: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, Capsid protein of PCV2
Authors:Khayat, R, Dhindwal, S.
Deposit date:2018-07-12
Release date:2018-12-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Porcine Circovirus 2 Uses a Multitude of Weak Binding Sites To Interact with Heparan Sulfate, and the Interactions Do Not Follow the Symmetry of the Capsid.
J.Virol., 93, 2019
3R0R
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BU of 3r0r by Molmil
The 2.3 A structure of porcine circovirus 2
Descriptor: Porcine circovirus 2 (PCV2) capsid protein, SULFATE ION
Authors:Khayat, R, Speir, J.A, Johnson, J.E.
Deposit date:2011-03-08
Release date:2011-06-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The 2.3-angstrom structure of porcine circovirus 2.
J.Virol., 85, 2011
7LAS
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BU of 7las by Molmil
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent helicase Rep, DNA (5'-D(P*GP*AP*TP*CP*GP*AP*TP*CP*GP*A)-3'), ...
Authors:Khayat, R.
Deposit date:2021-01-06
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Mechanism of DNA Interaction and Translocation by the Replicase of a Circular Rep-Encoding Single-Stranded DNA Virus.
Mbio, 12, 2021
7LAR
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BU of 7lar by Molmil
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent helicase Rep, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), ...
Authors:Khayat, R.
Deposit date:2021-01-06
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Mechanism of DNA Interaction and Translocation by the Replicase of a Circular Rep-Encoding Single-Stranded DNA Virus.
Mbio, 12, 2021
1NXH
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BU of 1nxh by Molmil
X-RAY STRUCTURE: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT87
Descriptor: MTH396 protein
Authors:Khayat, R, Savchenko, A, Edwards, A, Arowsmith, C, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2003-02-10
Release date:2004-02-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-RAY STRUCTURE OF MTH396
To be Published
2BBD
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BU of 2bbd by Molmil
Crystal Structure of the STIV MCP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, coat protein
Authors:Khayat, R.
Deposit date:2005-10-17
Release date:2005-12-06
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2XPH
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BU of 2xph by Molmil
Crystal structure of human SENP1 with the bound cobalt
Descriptor: COBALT (II) ION, GLYCEROL, SENTRIN-SPECIFIC PROTEASE 1
Authors:Rimsa, V, Eadsforth, T, Hay, R.T, Hunter, W.N.
Deposit date:2010-08-26
Release date:2010-09-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Role of Co2+ in the Crystallization of Human Senp1 and Comments on the Limitations of Automated Refinement Protocols
Acta Crystallogr.,Sect.F, 67, 2011
1A45
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BU of 1a45 by Molmil
GAMMAF CRYSTALLIN FROM BOVINE LENS
Descriptor: GAMMAF CRYSTALLIN
Authors:Norledge, B.V, Hay, R, Bateman, O.A, Slingsby, C, White, H.E, Moss, D.S, Lindley, P.F, Driessen, H.P.C.
Deposit date:1998-02-10
Release date:1998-06-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Towards a molecular understanding of phase separation in the lens: a comparison of the X-ray structures of two high Tc gamma-crystallins, gammaE and gammaF, with two low Tc gamma-crystallins, gammaB and gammaD.
Exp.Eye Res., 65, 1997
1A5D
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BU of 1a5d by Molmil
GAMMAE CRYSTALLIN FROM RAT LENS
Descriptor: GAMMAE CRYSTALLIN
Authors:Norledge, B.V, Hay, R, Bateman, O.A, Slingsby, C, Driessen, H.P.C.
Deposit date:1998-02-12
Release date:1998-05-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Towards a molecular understanding of phase separation in the lens: a comparison of the X-ray structures of two high Tc gamma-crystallins, gammaE and gammaF, with two low Tc gamma-crystallins, gammaB and gammaD.
Exp.Eye Res., 65, 1997
1ELP
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BU of 1elp by Molmil
GAMMA-D CRYSTALLIN STRUCTURE AT 1.95 A RESOLUTION
Descriptor: GAMMA-D CRYSTALLIN
Authors:Chirgadze, Yu.N, Driessen, H.P.C, Wright, G, Slingsby, C, Hay, R.E, Lindley, P.F.
Deposit date:1995-12-20
Release date:1996-06-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of bovine eye lens gammaD (gammaIIIb)-crystallin at 1.95 A.
Acta Crystallogr.,Sect.D, 52, 1996
2XEU
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BU of 2xeu by Molmil
Ring domain
Descriptor: RING FINGER PROTEIN 4, SULFATE ION, ZINC ION, ...
Authors:Plechanovova, A, McMahon, S.A, Johnson, K.A, Navratilova, I, Naismith, J.H, Hay, R.T.
Deposit date:2010-05-18
Release date:2010-07-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanism of Ubiquitylation by Dimeric Ring Ligase Rnf4
Nat.Struct.Mol.Biol., 18, 2011
4AP4
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BU of 4ap4 by Molmil
Rnf4 - ubch5a - ubiquitin heterotrimeric complex
Descriptor: E3 UBIQUITIN LIGASE RNF4, UBIQUITIN C, UBIQUITIN-CONJUGATING ENZYME E2 D1, ...
Authors:Plechanovova, A, Hay, R.T, Tatham, M.H, Jaffray, E, Naismith, J.H.
Deposit date:2012-03-30
Release date:2012-07-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of a Ring E3 Ligase and Ubiquitin-Loaded E2 Primed for Catalysis
Nature, 489, 2012

224572

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