Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 775 results

6A83
DownloadVisualize
BU of 6a83 by Molmil
Crystal structure of the C-terminal periplasmic domain of EcEptC from Escherichia coli complex with Zn
Descriptor: Phosphoethanolamine transferase EptC, SODIUM ION, ZINC ION
Authors:Zhao, Y.Q, Gu, Y.J, Cheng, W.
Deposit date:2018-07-06
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Structural and mechanistic insights into polymyxin resistance mediated by EptC originating from Escherichia coli.
FEBS J., 286, 2019
6KRX
DownloadVisualize
BU of 6krx by Molmil
Crystal Structure of AtPTP1 at 1.7 angstrom
Descriptor: CITRATE ANION, IODIDE ION, Protein-tyrosine-phosphatase PTP1
Authors:Zhao, Y.Y, Luo, Z.P, Wang, J, Wu, J.W.
Deposit date:2019-08-22
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:AtPTP1 positively mediates brassinosteroid signaling from receptor kinases to GSK3-like kinase BIN2
To Be Published
6KRW
DownloadVisualize
BU of 6krw by Molmil
Crystal Structure of AtPTP1 at 1.4 angstrom
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, IODIDE ION, ...
Authors:Zhao, Y.Y, Luo, Z.P, Wang, J, Wu, J.W.
Deposit date:2019-08-22
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of AtPTP1 at 1.4 Angstroms
To Be Published
5YKI
DownloadVisualize
BU of 5yki by Molmil
Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA
Descriptor: Pumilio homolog 1, RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3')
Authors:Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W.
Deposit date:2017-10-14
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Expanding RNA binding specificity and affinity of engineered PUF domains.
Nucleic Acids Res., 46, 2018
5YKH
DownloadVisualize
BU of 5ykh by Molmil
Crystal structure of the engineered nine-repeat PUF domain
Descriptor: PHOSPHATE ION, Pumilio homolog 1
Authors:Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W.
Deposit date:2017-10-14
Release date:2018-03-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Expanding RNA binding specificity and affinity of engineered PUF domains.
Nucleic Acids Res., 46, 2018
4O8S
DownloadVisualize
BU of 4o8s by Molmil
Crystal structure of JHP933 from Helicobacter pylori
Descriptor: Putative
Authors:Zhao, Y.H, Su, Y.T, Sun, L.F, Wu, Y.
Deposit date:2013-12-30
Release date:2014-09-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure Confirmation of JHP933 as a Nucleotidyltransferase Superfamily Protein from Helicobacter pylori Strain J99
Plos One, 9, 2014
5ZZU
DownloadVisualize
BU of 5zzu by Molmil
Crystal structure of the C-terminal periplasmic domain of EcEptC from Escherichia coli- complex with Zn
Descriptor: Phosphoethanolamine transferase EptC, ZINC ION
Authors:Zhao, Y.Q, Cheng, W, Gu, Y.J.
Deposit date:2018-06-04
Release date:2019-06-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into polymyxin resistance mediated by EptC originating from Escherichia coli
To Be Published
1XPV
DownloadVisualize
BU of 1xpv by Molmil
Solution Structure of Northeast Structural Genomics Target Protein XcR50 from X. Campestris
Descriptor: hypothetical protein XCC2852
Authors:Shao, Y, Acton, T.B, Liu, G, Ma, L, Shen, Y, Xiao, R, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-10-09
Release date:2004-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of Northeast Structural Genomics Target Protein XcR50 from X. Campestris
To be Published
4ILL
DownloadVisualize
BU of 4ill by Molmil
Recognition and Cleavage of a non-structured CRISPR RNA by its Processing Endoribonuclease Cas6
Descriptor: CRISPR-associated endoribonuclease Cas6 2, RNA (5'-R(*GP*CP*UP*AP*AP*UP*CP*UP*AP*CP*UP*AP*UP*AP*GP*AP*AP*UP*UP*GP*AP*AP*AP*G)-3')
Authors:Shao, Y, Li, H.
Deposit date:2012-12-31
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.484 Å)
Cite:Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6.
Structure, 21, 2013
5KK2
DownloadVisualize
BU of 5kk2 by Molmil
Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy
Descriptor: Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Zhao, Y, Chen, S, Yoshioka, C, Baconguis, I, Gouaux, E.
Deposit date:2016-06-20
Release date:2016-07-06
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Architecture of fully occupied GluA2 AMPA receptor-TARP complex elucidated by cryo-EM.
Nature, 536, 2016
6DB9
DownloadVisualize
BU of 6db9 by Molmil
Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer
Descriptor: Fab-Heavy-Chain, Fab-Light-Chain, MAGNESIUM ION, ...
Authors:Shao, Y, Shelke, S.A, Laski, A, Piccirilli, J.A.
Deposit date:2018-05-02
Release date:2018-11-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.025 Å)
Cite:Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Nat Commun, 9, 2018
7D7L
DownloadVisualize
BU of 7d7l by Molmil
The crystal structure of SARS-CoV-2 papain-like protease in complex with YM155
Descriptor: 1-(2-methoxyethyl)-2-methyl-3-(pyrazin-2-ylmethyl)benzo[f]benzimidazol-3-ium-4,9-dione, CAFFEINE, GLYCEROL, ...
Authors:Zhao, Y, Sun, L, Yang, H.T, Rao, Z.H.
Deposit date:2020-10-04
Release date:2021-04-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:High-throughput screening identifies established drugs as SARS-CoV-2 PLpro inhibitors.
Protein Cell, 12, 2021
7DHP
DownloadVisualize
BU of 7dhp by Molmil
Crystal structure of MazF from Deinococcus radiodurans
Descriptor: Endoribonuclease MazF, SULFATE ION
Authors:Zhao, Y, Dai, J.
Deposit date:2020-11-17
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:MazEF Toxin-Antitoxin System-Mediated DNA Damage Stress Response in Deinococcus radiodurans.
Front Genet, 12, 2021
6JY5
DownloadVisualize
BU of 6jy5 by Molmil
Structure of CsoS4B from Halothiobacillus neapolitanus
Descriptor: Unidentified carboxysome polypeptide
Authors:Zhao, Y.Y, Jiang, Y.L, Chen, Y, Zhou, C.Z, Li, Q.
Deposit date:2019-04-26
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of pentameric shell protein CsoS4B of Halothiobacillus neapolitanus alpha-carboxysome.
Biochem.Biophys.Res.Commun., 515, 2019
7D7K
DownloadVisualize
BU of 7d7k by Molmil
The crystal structure of SARS-CoV-2 papain-like protease in apo form
Descriptor: 1,2-ETHANEDIOL, CAFFEINE, Non-structural protein 3, ...
Authors:Zhao, Y, Sun, L, Yang, H.T, Rao, Z.H.
Deposit date:2020-10-04
Release date:2021-04-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-throughput screening identifies established drugs as SARS-CoV-2 PLpro inhibitors.
Protein Cell, 12, 2021
4ILR
DownloadVisualize
BU of 4ilr by Molmil
Recognition and Cleavage of a non-structured CRISPR RNA by its Processing Endoribonuclease Cas6
Descriptor: CRISPR-associated endoribonuclease Cas6 2
Authors:Shao, Y, Li, H.
Deposit date:2012-12-31
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.088 Å)
Cite:Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6.
Structure, 21, 2013
4RDP
DownloadVisualize
BU of 4rdp by Molmil
Crystal structure of Cmr4
Descriptor: CRISPR system Cmr subunit Cmr4
Authors:Shao, Y, Tang, L, Li, H.
Deposit date:2014-09-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Essential Structural and Functional Roles of the Cmr4 Subunit in RNA Cleavage by the Cmr CRISPR-Cas Complex.
Cell Rep, 9, 2014
7S1Y
DownloadVisualize
BU of 7s1y by Molmil
Cryo-EM structure of human NKCC1 K289NA492E bound with bumetanide
Descriptor: 3-(butylamino)-4-phenoxy-5-sulfamoylbenzoic acid, CHLORIDE ION, POTASSIUM ION, ...
Authors:Zhao, Y.X, Cao, E.h.
Deposit date:2021-09-02
Release date:2022-05-25
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for inhibition of the Cation-chloride cotransporter NKCC1 by the diuretic drug bumetanide
Nat Commun, 13, 2022
7S1X
DownloadVisualize
BU of 7s1x by Molmil
Cryo-EM structure of human NKCC1 K289NA492EL671C bound with bumetanide
Descriptor: 3-(butylamino)-4-phenoxy-5-sulfamoylbenzoic acid, CHLORIDE ION, POTASSIUM ION, ...
Authors:Zhao, Y.X, Cao, E.H.
Deposit date:2021-09-02
Release date:2022-05-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for inhibition of the Cation-chloride cotransporter NKCC1 by the diuretic drug bumetanide
Nat Commun, 13, 2022
7S1Z
DownloadVisualize
BU of 7s1z by Molmil
Cryo-EM structure of Human NKCC1 K289NA492EL671C
Descriptor: Solute carrier family 12 member 2
Authors:Zhao, Y.X, Cao, E.H.
Deposit date:2021-09-02
Release date:2022-05-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for inhibition of the Cation-chloride cotransporter NKCC1 by the diuretic drug bumetanide
Nat Commun, 13, 2022
4H4K
DownloadVisualize
BU of 4h4k by Molmil
Structure of the Cmr2-Cmr3 subcomplex of the Cmr RNA-silencing complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, ...
Authors:Shao, Y, Cocozaki, A.I, Ramia, N.F, Terns, R.M, Terns, M.P, Li, H.
Deposit date:2012-09-17
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Structure of the cmr2-cmr3 subcomplex of the cmr RNA silencing complex.
Structure, 21, 2013
7TTI
DownloadVisualize
BU of 7tti by Molmil
Human KCC1 bound with VU0463271 In an outward-open state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-cyclopropyl-N-(4-methyl-1,3-thiazol-2-yl)-2-[(6-phenylpyridazin-3-yl)sulfanyl]acetamide, Solute carrier family 12 member 4
Authors:Zhao, Y.X, Cao, E.H.
Deposit date:2022-02-01
Release date:2022-06-29
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the human cation-chloride cotransport KCC1 in an outward-open state.
Proc.Natl.Acad.Sci.USA, 119, 2022
7TTH
DownloadVisualize
BU of 7tth by Molmil
Human potassium-chloride cotransporter 1 in inward-open state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, POTASSIUM ION, Solute carrier family 12 member 4
Authors:Zhao, Y.X, Cao, E.H.
Deposit date:2022-02-01
Release date:2022-06-29
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structure of the human cation-chloride cotransport KCC1 in an outward-open state.
Proc.Natl.Acad.Sci.USA, 119, 2022
4ILM
DownloadVisualize
BU of 4ilm by Molmil
CRISPR RNA Processing endoribonuclease
Descriptor: CRISPR-associated endoribonuclease Cas6 2, RNA (5'-R(*GP*CP*UP*AP*AP*UP*CP*UP*AP*CP*UP*AP*UP*AP*GP*A)-3')
Authors:Shao, Y, Li, H.
Deposit date:2012-12-31
Release date:2013-03-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.068 Å)
Cite:Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6.
Structure, 21, 2013
5K4F
DownloadVisualize
BU of 5k4f by Molmil
CAL PDZ mutant C319A with a peptide
Descriptor: Golgi-associated PDZ and coiled-coil motif-containing protein, HPV18E6 peptide
Authors:Zhao, Y, Madden, D.R.
Deposit date:2016-05-20
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:CAL PDZ domain mutant with a peptide
To Be Published

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon