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PDB: 861 results

8WHB
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Structure of nucleosome core particle of Arabidopsis thaliana
Descriptor: DNA (antisense strand), DNA (sense strand), Histone H2A.6, ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-23
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH5
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BU of 8wh5 by Molmil
Structure of DDM1-nucleosome complex in the apo state
Descriptor: ATP-dependent DNA helicase DDM1, DNA (antisense strand), DNA (sense strand), ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8XV9
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BU of 8xv9 by Molmil
Fedratinib-bound human SLC19A3
Descriptor: N-tert-butyl-3-{[5-methyl-2-({4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]amino}benzenesulfonamide, Soluble cytochrome b562,Thiamine transporter 2
Authors:Dang, Y, Wang, G.P, Zhang, Z.
Deposit date:2024-01-14
Release date:2024-03-27
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
1EEO
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BU of 1eeo by Molmil
CRYSTAL STRUCTURE OF PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2
Descriptor: ACETYL-E-L-E-F-PTYR-M-D-Y-E-NH2 PEPTIDE, MAGNESIUM ION, PROTEIN TYROSINE PHOSPHATASE 1B
Authors:Sarmiento, M, Puius, Y.A, Vetter, S.W, Lawrence, D.S, Almo, S.C, Zhang, Z.Y.
Deposit date:2000-02-01
Release date:2001-02-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of plasticity in protein tyrosine phosphatase 1B substrate recognition.
Biochemistry, 39, 2000
4UI9
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BU of 4ui9 by Molmil
Atomic structure of the human Anaphase-Promoting Complex
Descriptor: ANAPHASE-PROMOTING COMPLEX SUBUNIT 1, ANAPHASE-PROMOTING COMPLEX SUBUNIT 10, ANAPHASE-PROMOTING COMPLEX SUBUNIT 11, ...
Authors:Chang, L, Zhang, Z, Yang, J, McLaughlin, S.H, Barford, D.
Deposit date:2015-03-27
Release date:2015-06-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Atomic Structure of the Apc and its Mechanism of Protein Ubiquitination
Nature, 522, 2015
8WX3
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BU of 8wx3 by Molmil
Cryo-EM structure of human SLC15A4 (outward-facing open)
Descriptor: Solute carrier family 15 member 4
Authors:Sakaniwa, K, Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2023-10-27
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Cryo-EM structure of human SLC15A4 (outward-facing open)
To Be Published
8WX2
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BU of 8wx2 by Molmil
Cryo-EM structure of human SLC15A3 (dimer)
Descriptor: Solute carrier family 15 member 3
Authors:Kasai, S, Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2023-10-27
Release date:2023-12-06
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Cryo-EM structure of human SLC15A3 (outward-facing partially occluded)
To Be Published
8WX4
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BU of 8wx4 by Molmil
Cryo-EM structure of human SLC15A4 in complex with Lys-Leu (outward-facing open)
Descriptor: LEUCINE, LYSINE, Solute carrier family 15 member 4
Authors:Sakaniwa, K, Zhang, Z, Ohto, U, Shimizu, T.
Deposit date:2023-10-27
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM structure of human SLC15A4 in complex with Lys-Leu (outward-facing open)
To Be Published
8WX5
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BU of 8wx5 by Molmil
Cryo-EM structure of human SLC15A4 in complex with TASL (inward-facing open)
Descriptor: Solute carrier family 15 member 4, TASL (TASL-SLC15A4 fusion protein)
Authors:Ohto, U, Zhang, Z, Fujimura, A, Shimizu, T.
Deposit date:2023-10-27
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Cryo-EM structure of human SLC15A4 in complex with TASL (inward-facing open)
To Be Published
5W3T
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BU of 5w3t by Molmil
Crystal structure of PopP2 in complex with IP6
Descriptor: GLYCEROL, INOSITOL HEXAKISPHOSPHATE, PopP2 protein
Authors:Song, J, Zhang, Z.M.
Deposit date:2017-06-08
Release date:2017-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanism of host substrate acetylation by a YopJ family effector.
Nat Plants, 3, 2017
8XV2
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BU of 8xv2 by Molmil
Thiamine-bound human SLC19A3
Descriptor: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, Soluble cytochrome b562,Thiamine transporter 2
Authors:Dang, Y, Wang, G.P, Zhang, Z.
Deposit date:2024-01-14
Release date:2024-03-27
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
8XV5
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BU of 8xv5 by Molmil
Pyridoxamine-bound human SLC19A3
Descriptor: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, Soluble cytochrome b562,Thiamine transporter 2
Authors:Dang, Y, Wang, G.P, Zhang, Z.
Deposit date:2024-01-14
Release date:2024-03-27
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Substrate and drug recognition mechanisms of SLC19A3.
Cell Res., 34, 2024
8IDN
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BU of 8idn by Molmil
Cryo-EM structure of RBD/E77-Fab complex
Descriptor: E77 Fab heavy chain, E77 Fab light chain, Spike protein S1, ...
Authors:Lu, D.F, Zhang, Z.C.
Deposit date:2023-02-13
Release date:2023-06-21
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:The structure of the RBD-E77 Fab complex reveals neutralization and immune escape of SARS-CoV-2.
Acta Crystallogr D Struct Biol, 79, 2023
7YVB
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BU of 7yvb by Molmil
Aplysia californica FaNaC in ligand bound state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide-gated Na+ channel, ...
Authors:Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S.
Deposit date:2022-08-19
Release date:2023-08-09
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily.
Nat.Chem.Biol., 19, 2023
7YVC
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BU of 7yvc by Molmil
Aplysia californica FaNaC in apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S.
Deposit date:2022-08-19
Release date:2023-08-09
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily.
Nat.Chem.Biol., 19, 2023
8A5Y
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BU of 8a5y by Molmil
S. cerevisiae apo unphosphorylated APC/C.
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
Authors:Barford, D, Fernandez-Vazquez, E, Zhang, Z, Yang, J.
Deposit date:2022-06-16
Release date:2022-08-31
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex and comparison to apo unphosphorylated and phosphorylated states
To Be Published
8A61
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BU of 8a61 by Molmil
S. cerevisiae apo phosphorylated APC/C
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
Authors:Barford, D, Fernandez-Vazquez, E, Zhang, Z, Yang, J.
Deposit date:2022-06-16
Release date:2022-08-31
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Cryo-EM structure of the S. cerevisiae apo phosphorylated APC/C
To Be Published
8A3T
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BU of 8a3t by Molmil
S. cerevisiae APC/C-Cdh1 complex
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
Authors:Barford, D, Vazquez-Fernandez, E, Zhang, Z, Yang, J.
Deposit date:2022-06-09
Release date:2022-08-31
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex
To Be Published
7CRC
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BU of 7crc by Molmil
Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Avirulence protein ATR1, ...
Authors:Ma, S.C, Lapin, D, Liu, L, Sun, Y, Song, W, Zhang, X.X, Logemann, E, Yu, D.L, Wang, J, Jirschitzka, J, Han, Z.F, SchulzeLefert, P, Parker, J.E, Chai, J.J.
Deposit date:2020-08-13
Release date:2020-12-16
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme.
Science, 370, 2020
7CRB
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BU of 7crb by Molmil
Cryo-EM structure of plant NLR RPP1 LRR-ID domain in complex with ATR1
Descriptor: Avirulence protein ATR1, NAD+ hydrolase (NADase)
Authors:Ma, S.C, Lapin, D, Liu, L, Sun, Y, Song, W, Zhang, X.X, Logemann, E, Yu, D.L, Wang, J, Jirschitzka, J, Han, Z.F, SchulzeLefert, P, Parker, J.E, Chai, J.J.
Deposit date:2020-08-13
Release date:2020-12-16
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme.
Science, 370, 2020
7D3Y
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BU of 7d3y by Molmil
Crystal structure of the osPHR2-osSPX2 complex
Descriptor: INOSITOL HEXAKISPHOSPHATE, Protein PHOSPHATE STARVATION RESPONSE 2, SPX domain-containing protein 2,Isoform 1 of Core histone macro-H2A.1
Authors:Zhang, Q.X, Guan, Z.Y, Zuo, J.Q, Zhang, Z.F, Liu, Z.
Deposit date:2020-09-21
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 - PHR2 complex.
Nat Commun, 13, 2022
6LYH
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BU of 6lyh by Molmil
Crystal structure of tea N9-methyltransferase CkTcS in complex with SAH and 1,3,7-trimethyluric acid
Descriptor: 1,3,7-trimethyl-9H-purine-2,6,8-trione, N-methyltransferase CkTcS, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Wang, Y, Zhang, Z.-M.
Deposit date:2020-02-14
Release date:2020-03-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.15000319 Å)
Cite:Identification and characterization of N9-methyltransferase involved in converting caffeine into non-stimulatory theacrine in tea.
Nat Commun, 11, 2020
7D3T
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BU of 7d3t by Molmil
Crystal structure of OSPHR2 in complex with DNA
Descriptor: DNA (5'-D(P*CP*TP*CP*GP*GP*AP*TP*AP*TP*CP*CP*TP*CP*AP*AP*G)-3'), DNA (5'-D(P*GP*CP*TP*TP*GP*AP*GP*GP*AP*TP*AP*TP*CP*CP*GP*A)-3'), Protein PHOSPHATE STARVATION RESPONSE 2
Authors:Guan, Z.Y, Zhang, Z.F, Liu, Z.
Deposit date:2020-09-20
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 - PHR2 complex.
Nat Commun, 13, 2022
6KZD
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BU of 6kzd by Molmil
Crystal structure of TRKc in complex with 3-((6-(4-aminophenyl)imidazo[1,2-a]pyrazin-3-yl)ethynyl)- N-(3-isopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-2- methylbenzamide
Descriptor: 3-[2-[6-(4-aminophenyl)imidazo[1,2-a]pyrazin-3-yl]ethynyl]-2-methyl-~{N}-[3-(4-methylpiperazin-1-yl)-5-propan-2-yl-phenyl]benzamide, NT-3 growth factor receptor, PHOSPHATE ION
Authors:Wang, Y, Zhang, Z.M.
Deposit date:2019-09-23
Release date:2019-10-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:Design, synthesis and biological evaluation of 3-(imidazo[1,2-a]pyrazin-3-ylethynyl)-2-methylbenzamides as potent and selective pan-tropomyosin receptor kinase (TRK) inhibitors.
Eur.J.Med.Chem., 179, 2019
6M4Q
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BU of 6m4q by Molmil
Cytochrome P450 monooxygenase StvP2 substrate-free structure
Descriptor: Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sun, G, Hu, C, Mei, Q, Luo, M, Chen, X, Li, Z, Liu, Y, Deng, Z, Zhang, Z, Sun, Y.
Deposit date:2020-03-08
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Uncovering the cytochrome P450-catalyzed methylenedioxy bridge formation in streptovaricins biosynthesis.
Nat Commun, 11, 2020

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PDB entries from 2024-07-17

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