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PDB: 347 件

2MRO
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Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1)
分子名称: DNA damage-inducible protein 1, Polyubiquitin-B
著者Zhang, D, Fushman, D.
登録日2014-07-14
公開日2015-02-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
1H6H
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Structure of the PX domain from p40phox bound to phosphatidylinositol 3-phosphate
分子名称: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE, GLYCEROL, NEUTROPHIL CYTOSOL FACTOR 4
著者Karathanassis, D, Bravo, J, Pacold, M, Perisic, O, Williams, R.L.
登録日2001-06-15
公開日2001-11-01
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Crystal Structure of the Px Domain from P40Phox Bound to Phosphatidylinositol 3-Phosphate
Mol.Cell, 8, 2001
2GZB
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Bauhinia bauhinioides cruzipain inhibitor (BbCI)
分子名称: IODIDE ION, Kunitz-type proteinase inhibitor BbCI
著者Hansen, D, Macedo-Ribeiro, S, Navarro, M.V.A.S, Garratt, R.C, Oliva, M.L.V.
登録日2006-05-11
公開日2007-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a novel cysteinless plant Kunitz-type protease inhibitor.
Biochem.Biophys.Res.Commun., 360, 2007
2K57
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Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.
分子名称: Putative Lipoprotein
著者Hang, D, Aramini, J.A, Rossi, P, Wang, D, Jiang, M, Maglaqui, M, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2008-06-25
公開日2008-09-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of Putative Lipoprotein from Pseudomonas syringae Gene Locus PSPTO2350. Northeast Structural Genomics Target PsR76A.
To be Published
2L0Q
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NMR Solution Structure of Vibrio harveyi Acyl Carrier Protein (ACP)
分子名称: Acyl carrier protein
著者Chan, D.I, Chu, B.C.H, Lau, C.K.Y, Hunter, H.N, Byers, D.M, Vogel, H.J.
登録日2010-07-12
公開日2010-07-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR solution structure and biophysical characterization of Vibrio harveyi acyl carrier protein A75H: effects of divalent metal ions.
J.Biol.Chem., 285, 2010
2JYO
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BU of 2jyo by Molmil
NMR Solution structure of Human MIP-3alpha/CCL20
分子名称: C-C motif chemokine 20 (Small-inducible cytokine A20) (Macrophage inflammatory protein 3 alpha) (MIP-3-alpha) (Liver and activation-regulated chemokine) (CC chemokine LARC) (Beta chemokine exodus-1)
著者Chan, D.I, Hunter, H.N, Tack, B.F, Vogel, H.J.
登録日2007-12-14
公開日2008-01-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Human macrophage inflammatory protein 3alpha: protein and peptide nuclear magnetic resonance solution structures, dimerization, dynamics, and anti-infective properties.
Antimicrob.Agents Chemother., 52, 2008
1O7K
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human p47 PX domain complex with sulphates
分子名称: NEUTROPHIL CYTOSOL FACTOR 1, SULFATE ION
著者Karathanassis, D, Bravo, J, Perisic, O, Pacold, C.M, Williams, R.L.
登録日2002-11-07
公開日2002-11-20
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of the Px Domain of P47Phox to Phosphatidylinositol 3.4-Bisphosphate and Phosphatidic Acid is Masked by an Intramolecular Interaction
Embo J., 21, 2002
4MZU
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BU of 4mzu by Molmil
Crystal structure of FdtD, a bifunctional ketoisomerase/N-acetyltransferase from Shewanella denitrificans
分子名称: COENZYME A, MAGNESIUM ION, THYMIDINE-5'-DIPHOSPHATE, ...
著者Chantigian, D.P, Thoden, J.B, Holden, H.M.
登録日2013-09-30
公開日2013-10-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and Biochemical Characterization of a Bifunctional Ketoisomerase/N-Acetyltransferase from Shewanella denitrificans.
Biochemistry, 52, 2013
8Y0F
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Solution NMR structure of the PTK7-binding DNA aptamer sgc8c
分子名称: DNA
著者He, A, Wan, L, Guo, P, Han, D.
登録日2024-01-22
公開日2024-06-26
実験手法SOLUTION NMR
主引用文献Structure-based investigation of a DNA aptamer targeting PTK7 reveals an intricate 3D fold guiding functional optimization
Proc.Natl.Acad.Sci.USA, 2024
7XA7
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Crystal structure of SARS-CoV-2 receptor-binding domain in complex with intermediate horseshoe bat ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
著者Tang, L.F, Zhang, D, Han, P, Qi, J.X.
登録日2022-03-17
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Structural basis of SARS-CoV-2 and its variants binding to intermediate horseshoe bat ACE2.
Int J Biol Sci, 18, 2022
7X1Z
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Structure of the phosphorylation-site double mutant S431E/T432E of the KaiC circadian clock protein
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, MAGNESIUM ION
著者Han, X, Zhang, D.L, Hong, L, Yu, D.Q, Wu, Z.L, Yang, T, Rust, M.J, Tu, Y.H, Ouyang, Q.
登録日2022-02-25
公開日2023-04-19
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Determining subunit-subunit interaction from statistics of cryo-EM images: observation of nearest-neighbor coupling in a circadian clock protein complex
Nat Commun, 14, 2023
7X1Y
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BU of 7x1y by Molmil
Structure of the phosphorylation-site double mutant S431A/T432A of the KaiC circadian clock protein
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, MAGNESIUM ION
著者Han, X, Zhang, D.L, Hong, L, Yu, D.Q, Wu, Z.L, Yang, T, Rust, M.J, Tu, Y.H, Ouyang, Q.
登録日2022-02-25
公開日2023-04-26
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Determining subunit-subunit interaction from statistics of cryo-EM images: observation of nearest-neighbor coupling in a circadian clock protein complex
Nat Commun, 14, 2023
5WIS
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BU of 5wis by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
分子名称: (3R,4S,5S,7R,9E,11S,12R)-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-2,8-dioxooxacyclododec-9-en-4-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside, 16S Ribosomal RNA, 23S ribosomal RNA, ...
著者Almutairi, M.M, Svetlov, M.S, Hansen, D.A, Khabibullina, N.F, Klepacki, D, Kang, H.Y, Sherman, D.H, Vazquez-Laslop, N, Polikanov, Y.S, Mankin, A.S.
登録日2017-07-20
公開日2018-02-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Co-produced natural ketolides methymycin and pikromycin inhibit bacterial growth by preventing synthesis of a limited number of proteins.
Nucleic Acids Res., 45, 2017
1IF1
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INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA
分子名称: DNA (26-MER), PROTEIN (INTERFERON REGULATORY FACTOR 1)
著者Escalante, C.R, Yie, J, Thanos, D, Aggarwal, A.
登録日1997-09-12
公開日1998-02-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of IRF-1 with bound DNA reveals determinants of interferon regulation.
Nature, 391, 1998
5EIV
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Crystal structure of complex of osteoclast-associated immunoglobulin-like receptor (OSCAR) and a synthetic collagen consensus peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CHLORIDE ION, ...
著者Zhou, L, Blaszczyk, M, Chirgadze, D, Bihan, D, Farndale, R.W.
登録日2015-10-30
公開日2015-11-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.414 Å)
主引用文献Structural basis for collagen recognition by the immune receptor OSCAR.
Blood, 127, 2016
8XHK
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Crystal structure of alpha-Oxoamine Synthase Alb29 with PLP cofactor
分子名称: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, PYRIDOXAL-5'-PHOSPHATE
著者Xu, M.J, Zhang, D.K.
登録日2023-12-18
公開日2024-05-01
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Structural and mechanistic investigations on CC bond forming alpha-oxoamine synthase allowing L-glutamate as substrate.
Int.J.Biol.Macromol., 268, 2024
8XHD
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Crystal structure of alpha-Oxoamine Synthase Alb29 with PLP cofactor and L-glutamate
分子名称: 8-amino-7-oxononanoate synthase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid, PYRIDOXAL-5'-PHOSPHATE
著者Xu, M.J, Zhang, D.K.
登録日2023-12-17
公開日2024-05-01
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and mechanistic investigations on CC bond forming alpha-oxoamine synthase allowing L-glutamate as substrate.
Int.J.Biol.Macromol., 268, 2024
8XHA
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Crystal structure of alpha-Oxoamine Synthase Alb29 with PLP cofactor and L-glutamate
分子名称: 8-amino-7-oxononanoate synthase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid, PYRIDOXAL-5'-PHOSPHATE
著者Xu, M.J, Zhang, D.K.
登録日2023-12-17
公開日2024-05-01
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Structural and mechanistic investigations on CC bond forming alpha-oxoamine synthase allowing L-glutamate as substrate.
Int.J.Biol.Macromol., 268, 2024
5EDT
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Crystal structure of Mycobacterium tuberculosis CYP121 in complex with LIG9
分子名称: 2-azanyl-5-chloranyl-benzamide, Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Kavanagh, M.E, Coyne, A.G, McLean, K.J, James, G.G, Levy, C, Marino, L.B, Carvalho, L.P.D, Chan, D.S.H, Hudson, S.A, Surade, S, Munro, A.W, Abell, C.
登録日2015-10-22
公開日2016-04-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Fragment-Based Approaches to the Development of Mycobacterium tuberculosis CYP121 Inhibitors.
J.Med.Chem., 59, 2016
6NZN
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Dimer-of-dimer amyloid fibril structure of glucagon
分子名称: Glucagon
著者Gelenter, M.D, Smith, K.J, Liao, S.Y, Mandala, V.S, Dregni, A.J, Lamm, M.S, Tian, Y, Wei, X, Pochan, D.J, Tucker, T.J, Su, Y, Hong, M.
登録日2019-02-14
公開日2019-06-05
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献The peptide hormone glucagon forms amyloid fibrils with two coexisting beta-strand conformations.
Nat.Struct.Mol.Biol., 26, 2019
6U0M
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Structure of the S. cerevisiae replicative helicase CMG in complex with a forked DNA
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, DNA (15-MER), ...
著者Yuan, Z, Georgescu, R, Bai, L, Zhang, D, O'Donnell, M, Li, H.
登録日2019-08-14
公開日2020-03-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献DNA unwinding mechanism of a eukaryotic replicative CMG helicase.
Nat Commun, 11, 2020
7XF3
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The structure of HLA-B*1501/BM58-66AF9
分子名称: 9-mer peptide from Matrix protein 1, Beta-2-microglobulin, MHC class I antigen
著者Zhao, Y.Z, Xiao, W.L, Wu, Y.N, Fan, W.F, Yue, C, Zhang, Q.X, Zhang, D.N, Yuan, X.J, Yao, S.J, Liu, S, Li, M, Wang, P.Y, Zhang, H.J, Zhang, J, Zhao, M, Zheng, X.Q, Liu, W.J, Gao, G.F, Liu, W.L.
登録日2022-03-31
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Parallel T Cell Immunogenic Regions in Influenza B and A Viruses with Distinct Nuclear Export Signal Functions: The Balance between Viral Life Cycle and Immune Escape.
J Immunol., 210, 2023
1XC7
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Binding of beta-D-glucopyranosyl bismethoxyphosphoramidate to glycogen phosphorylase b: Kinetic and crystallographic studies
分子名称: Glycogen phosphorylase, muscle form, N-(dimethoxyphosphoryl)-beta-D-glucopyranosylamine, ...
著者Chrysina, E.D, Kosmopoulou, M.N, Kardakaris, R, Bischler, N, Leonidas, D.D, Kannan, T, Loganathan, D, Oikonomakos, N.G.
登録日2004-09-01
公開日2005-02-08
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Binding of beta-d-glucopyranosyl bismethoxyphosphoramidate to glycogen phosphorylase b: kinetic and crystallographic studies
Bioorg.Med.Chem., 13, 2005
8J67
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Crystal structure of Toxoplasma gondii M2AP
分子名称: MIC2-associated protein
著者Wang, F.F, Zhang, D.J, Zhang, S, Springer, T.A, Song, G.J.
登録日2023-04-24
公開日2023-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural insights into MIC2 recognition by MIC2-associated protein in Toxoplasma gondii.
Commun Biol, 6, 2023
8J64
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Crystal structure of Toxoplasma gondii MIC2-M2AP complex
分子名称: MIC2-associated protein, Micronemal protein MIC2
著者Zhang, S, Wang, F.F, Zhang, D.J, Song, G.J, Springer, T.A.
登録日2023-04-24
公開日2023-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into MIC2 recognition by MIC2-associated protein in Toxoplasma gondii.
Commun Biol, 6, 2023

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