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PDB: 164 results

3GFQ
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BU of 3gfq by Molmil
Structure of YhdA, K109L variant
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-dependent NADPH-azoreductase
Authors:Staunig, N, Gruber, K.
Deposit date:2009-02-27
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.996 Å)
Cite:A single intersubunit salt bridge affects oligomerization and catalytic activity in a bacterial quinone reductase
Febs J., 276, 2009
5LUI
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BU of 5lui by Molmil
Structure of cutinase 1 from Thermobifida cellulosilytica
Descriptor: CHLORIDE ION, Cutinase 1, DI(HYDROXYETHYL)ETHER, ...
Authors:Hromic, A, Lyskowski, A, Gruber, K.
Deposit date:2016-09-08
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica.
Biotechnol. Bioeng., 114, 2017
5LUK
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BU of 5luk by Molmil
Structure of a double variant of cutinase 2 from Thermobifida cellulosilytica
Descriptor: CHLORIDE ION, Cutinase 2, MAGNESIUM ION
Authors:Hromic, A, Lyskowski, A, Gruber, K.
Deposit date:2016-09-09
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica.
Biotechnol. Bioeng., 114, 2017
3GFR
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BU of 3gfr by Molmil
Structure of YhdA, D137L variant
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-dependent NADPH-azoreductase
Authors:Staunig, N, Gruber, K.
Deposit date:2009-02-27
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:A single intersubunit salt bridge affects oligomerization and catalytic activity in a bacterial quinone reductase
Febs J., 276, 2009
5M3K
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BU of 5m3k by Molmil
A multi-component acyltransferase PhlABC from Pseudomonas protegens
Descriptor: 2,4-diacetylphloroglucinol biosynthesis protein PhlB, 2,4-diacetylphloroglucinol biosynthesis protein PhlC, PhlA, ...
Authors:Pavkov-Keller, T, Schmidt, N.G, Kroutil, W, Gruber, K.
Deposit date:2016-10-15
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Structure and Catalytic Mechanism of a Bacterial Friedel-Crafts Acylase.
Chembiochem, 20, 2019
5LUJ
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BU of 5luj by Molmil
Structure of cutinase 2 from Thermobifida cellulosilytica
Descriptor: CHLORIDE ION, Cutinase 2
Authors:Hromic, A, Lyskowski, A, Gruber, K.
Deposit date:2016-09-08
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica.
Biotechnol. Bioeng., 114, 2017
5LUL
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BU of 5lul by Molmil
Structure of a triple variant of cutinase 2 from Thermobifida cellulosilytica
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase 2
Authors:Hromic, A, Lyskowski, A, Gruber, K.
Deposit date:2016-09-09
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Small cause, large effect: Structural characterization of cutinases from Thermobifida cellulosilytica.
Biotechnol. Bioeng., 114, 2017
3GFS
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BU of 3gfs by Molmil
Structure of YhdA, K109D/D137K variant
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-dependent NADPH-azoreductase
Authors:Staunig, N, Gruber, K.
Deposit date:2009-02-27
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:A single intersubunit salt bridge affects oligomerization and catalytic activity in a bacterial quinone reductase
Febs J., 276, 2009
3T6B
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BU of 3t6b by Molmil
Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 2.4 Angstroms
Descriptor: Dipeptidyl peptidase 3, Tynorphin
Authors:Bezerra, G.A, Gruber, K.
Deposit date:2011-07-28
Release date:2012-04-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III
Proc.Natl.Acad.Sci.USA, 109, 2012
3T6J
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BU of 3t6j by Molmil
Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 3.0 Angstroms
Descriptor: Dipeptidyl peptidase 3, Tynorphin
Authors:Bezerra, G.A, Gruber, K.
Deposit date:2011-07-28
Release date:2012-04-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.976 Å)
Cite:Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SH3
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BU of 3sh3 by Molmil
Crystal structure of a pro-inflammatory lectin from the seeds of Dioclea wilsonii STANDL
Descriptor: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, CHLORIDE ION, ...
Authors:Rangel, T.B.A, Rocha, B.A.M, Bezerra, G.A, Bezerra, M.J.B, Nascimento, K.S, Nagano, C.S, Sampaio, A.H, Assreuy, A.M.S, Gruber, K, Delatorre, P, Cavada, B.S.
Deposit date:2011-06-15
Release date:2011-10-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a pro-inflammatory lectin from the seeds of Dioclea wilsonii Standl.
Biochimie, 94, 2012
8AWN
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BU of 8awn by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant C106Q
Descriptor: CHLORIDE ION, Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
4FQF
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BU of 4fqf by Molmil
Crystal structure of a thionitrate intermediate of human aldehyde dehydrogenase-2
Descriptor: Aldehyde dehydrogenase, mitochondrial, MAGNESIUM ION, ...
Authors:Lang, B.S, Gruber, K.
Deposit date:2012-06-25
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.281 Å)
Cite:Vascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY.
J.Biol.Chem., 287, 2012
4FR8
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BU of 4fr8 by Molmil
Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Aldehyde dehydrogenase, ...
Authors:Lang, B.S, Gruber, K.
Deposit date:2012-06-26
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Vascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY.
J.Biol.Chem., 287, 2012
8AWO
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BU of 8awo by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant AIFQ (Y7A/M38I/Y83F/C106Q)
Descriptor: Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
8AWP
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BU of 8awp by Molmil
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant 208 (V19I/R23H/M38I/I60F/C106Q)
Descriptor: Cupin_2 domain-containing protein
Authors:Grininger, C, Steiner, K, Gruber, K, Pavkov-Keller, T.
Deposit date:2022-08-30
Release date:2023-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.595 Å)
Cite:Engineering TM1459 for Stabilisation against Inactivation by Amino Acid Oxidation
Chem Ing Tech, 2023
5D79
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BU of 5d79 by Molmil
Structure of BBE-like #28 from Arabidopsis thaliana
Descriptor: Berberine bridge enzyme-like protein, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Daniel, B, Kumar, P, Gruber, K.
Deposit date:2015-08-13
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
Plos One, 11, 2016
4J2P
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BU of 4j2p by Molmil
Crystal structure of LuxF from Photobacterium leiognathi
Descriptor: Non-fluorescent flavoprotein
Authors:Winkler, A, Macheroux, P, Gruber, K.
Deposit date:2013-02-05
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and biochemical properties of LuxF from Photobacterium leiognathi.
Biochim. Biophys. Acta, 1854, 2015
5EB4
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BU of 5eb4 by Molmil
The crystal structure of almond HNL, PaHNL5 V317A, expressed in Aspergillus niger
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, K.
Deposit date:2015-10-17
Release date:2016-04-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of almond hydroxynitrile lyase isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLs.
J.Biotechnol., 235, 2016
5E33
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BU of 5e33 by Molmil
Structure of human DPP3 in complex with met-enkephalin
Descriptor: Dipeptidyl peptidase 3, MAGNESIUM ION, Met-enkephalin, ...
Authors:Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
Deposit date:2015-10-01
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
5E2Q
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BU of 5e2q by Molmil
Structure of human DPP3 in complex with angiotensin-II
Descriptor: Dipeptidyl peptidase 3, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Kumar, P, Reisinger, M, Reithofer, V, Gruber, K.
Deposit date:2015-10-01
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
3D2J
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BU of 3d2j by Molmil
Structure of berberine bridge enzyme from Eschscholzia californica, tetragonal crystal form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
Deposit date:2008-05-08
Release date:2008-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
3AX4
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BU of 3ax4 by Molmil
Three-dimensional structure of lectin from Dioclea violacea and comparative vasorelaxant effects with Dioclea rostrata
Descriptor: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Bezerra, M.J.B, Bezerra, G.A, Martins, J.L, Nascimento, K.S, Nagano, C.S, Gruber, K, Assereuy, A.M, Delatorre, P, Rocha, B.A.M, Cavada, B.S.
Deposit date:2011-03-29
Release date:2012-04-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.613 Å)
Cite:Crystal structure of Dioclea violacea lectin and a comparative study of vasorelaxant properties with Dioclea rostrata lectin
Int.J.Biochem.Cell Biol., 45, 2013
3D2H
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BU of 3d2h by Molmil
Structure of berberine bridge enzyme from Eschscholzia californica, monoclinic crystal form
Descriptor: (2R,3S,4S)-5-[(4R)-6',7'-dimethyl-2,3',5-trioxo-1'H-spiro[imidazolidine-4,2'-quinoxalin]-4'(3'H)-yl]-2,3,4-trihydroxypentyl-adenosine diphosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
Deposit date:2008-05-08
Release date:2008-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
3CSK
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BU of 3csk by Molmil
Structure of DPP III from Saccharomyces cerevisiae
Descriptor: MAGNESIUM ION, Probable dipeptidyl-peptidase 3, ZINC ION
Authors:Baral, P.K, Jajcanin, N, Deller, S, Macheroux, P, Abramic, M, Gruber, K.
Deposit date:2008-04-10
Release date:2008-06-10
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The first structure of dipeptidyl-peptidase III provides insight into the catalytic mechanism and mode of substrate binding.
J.Biol.Chem., 283, 2008

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