PDB Search results for query - Protein Data Bank Japan

PDB: 115 results

MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN
Descriptor:	BETA-2 MICROGLOBULIN, MHC CLASS I H-2KB HEAVY CHAIN, SENDAI VIRUS NUCLEOPROTEIN
Authors:	Fremont, D.H, Wilson, I.A.
Deposit date:	1994-11-01
Release date:	1996-06-20
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb. Science, 257, 1992

2VAA

MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN
Descriptor:	BETA-2 MICROGLOBULIN, MHC CLASS I H-2KB HEAVY CHAIN, VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN
Authors:	Fremont, D.H, Wilson, I.A.
Deposit date:	1994-11-01
Release date:	1996-06-20
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb. Science, 257, 1992

1VAC

MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND CHICKEN OVALBUMIN
Descriptor:	BETA-2 MICROGLOBULIN, CHICKEN OVALBUMIN, MHC CLASS I H-2KB HEAVY CHAIN
Authors:	Fremont, D.H, Wilson, I.A.
Deposit date:	1994-11-01
Release date:	1996-06-20
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove. Proc.Natl.Acad.Sci.USA, 92, 1995

1PSH

CRYSTAL STRUCTURE OF PHOSPHOLIPASE A2 FROM INDIAN COBRA REVEALS A TRIMERIC ASSOCIATION
Descriptor:	CALCIUM ION, PHOSPHOLIPASE A2
Authors:	Fremont, D, Xuong, N.-H, Wilson, I.
Deposit date:	1992-07-28
Release date:	1994-01-31
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Crystal structure of phospholipase A2 from Indian cobra reveals a trimeric association. Proc.Natl.Acad.Sci.USA, 90, 1993

1VAD

MHC CLASS I H-2KB HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND YEAST ALPHA-GLUCOSIDASE
Descriptor:	BETA-2 MICROGLOBULIN, MHC CLASS I H-2KB HEAVY CHAIN, YEAST ALPHA-GLUCOSIDASE
Authors:	Fremont, D.H, Wilson, I.A.
Deposit date:	1994-11-01
Release date:	1996-06-20
Last modified:	2024-06-05
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove. Proc.Natl.Acad.Sci.USA, 92, 1995

6ORT

Crystal Structure of Bos taurus Mxra8 Ectodomain
Descriptor:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Matrix remodeling-associated protein 8
Authors:	Fremont, D.H, Kim, A.S, Nelson, C.A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2019-04-30
Release date:	2020-03-04
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis. Cell Host Microbe, 27, 2020

3OQ3

Structural Basis of Type-I Interferon Sequestration by a Poxvirus Decoy Receptor
Descriptor:	1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
Authors:	Fremont, D.H, Lee, C.A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2010-09-02
Release date:	2011-05-18
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structural Basis of Type-I Interferon Sequestration by a Poxvirus Decoy Receptor To be Published

3M5R

Crystal Structure of Swine Flu Virus NS1 Effector Domain from H1N1 Influenza A/California/07/2009
Descriptor:	Nonstructural protein 1
Authors:	Fremont, D.H, Yu, Y.Y.L, Nelson, C.A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2010-03-13
Release date:	2010-04-07
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal Structure of Swine Flu Virus NS1 Effector Domain from H1N1 Influenza A/California/07/2009 To be Published

1EYH

CRYSTAL STRUCTURE OF THE EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN AT 1.56 ANGSTROM RESOLUTION
Descriptor:	EPSIN
Authors:	Fremont, D.H.
Deposit date:	2000-05-06
Release date:	2000-06-07
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (1.56 Å)
Cite:	CRYSTAL STRUCTURE OF THE EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN AT 1.56 ANGSTROM RESOLUTION To be Published

6NK3

Crystal structure of murine Mxra8 ectodomain
Descriptor:	Matrix remodeling-associated protein 8
Authors:	Fremont, D.H, Kim, A.S, Nelson, C.A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2019-01-04
Release date:	2019-05-22
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Cryo-EM Structure of Chikungunya Virus in Complex with the Mxra8 Receptor. Cell, 177, 2019

1IEA

HISTOCOMPATIBILITY ANTIGEN
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, MHC CLASS II I-EK
Authors:	Fremont, D.H, Hendrickson, W.A, Marrack, P, Kappler, J.
Deposit date:	1996-04-05
Release date:	1997-06-05
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structures of an MHC class II molecule with covalently bound single peptides. Science, 272, 1996

1IEB

HISTOCOMPATIBILITY ANTIGEN
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, MHC CLASS II I-EK, SULFATE ION
Authors:	Fremont, D.H, Hendrickson, W.A, Marrack, P, Kappler, J.
Deposit date:	1996-04-05
Release date:	1997-06-05
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structures of an MHC class II molecule with covalently bound single peptides. Science, 272, 1996

1IAK

HISTOCOMPATIBILITY ANTIGEN I-AK
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, MHC CLASS II I-AK
Authors:	Fremont, D.H, Unanue, E.R, Hendrickson, W.A.
Deposit date:	1997-11-18
Release date:	1998-04-15
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Crystal structure of I-Ak in complex with a dominant epitope of lysozyme. Immunity, 8, 1998

1KT2

CRYSTAL STRUCTURE OF CLASS II MHC MOLECULE IEK BOUND TO MOTH CYTOCHROME C PEPTIDE
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion protein consisting of cytochrome C peptide, ...
Authors:	Fremont, D.H, Dai, S, Chiang, H, Crawford, F, Marrack, P, Kappler, J.
Deposit date:	2002-01-15
Release date:	2002-05-01
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Structural basis of cytochrome c presentation by IE(k). J.Exp.Med., 195, 2002

1KTD

CRYSTAL STRUCTURE OF CLASS II MHC MOLECULE IEK BOUND TO PIGEON CYTOCHROME C PEPTIDE
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion protein consisting of cytochrome C peptide, glycine rich linker, ...
Authors:	Fremont, D.H, Dai, S, Chiang, H, Crawford, F, Marrack, P, Kappler, J.
Deposit date:	2002-01-15
Release date:	2002-05-01
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structural basis of cytochrome c presentation by IE(k). J.Exp.Med., 195, 2002

1K8I

CRYSTAL STRUCTURE OF MOUSE H2-DM
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, MHC class II H2-M alpha chain, MHC class II H2-M beta 2 chain
Authors:	Fremont, D.H, Crawford, F, Marrack, P, Hendrickson, W, Kappler, J.
Deposit date:	2001-10-24
Release date:	2001-12-05
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (3.1 Å)
Cite:	Crystal structure of mouse H2-M. Immunity, 9, 1998

5VQ5

Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD
Descriptor:	Adhesin, IODIDE ION
Authors:	Klein, R.D, Spaulding, C.N, Dodson, K.W, Pinkner, J.S, Hultgren, S.J, Fremont, D.
Deposit date:	2017-05-08
Release date:	2017-05-24
Last modified:	2019-12-11
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist. Nature, 546, 2017

7MKM

SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-38 Fv heavy chain, SARS2-38 Fv light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2021-04-24
Release date:	2021-05-12
Last modified:	2021-12-01
Method:	ELECTRON MICROSCOPY (3.16 Å)
Cite:	A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope. Immunity, 54, 2021

7MKL

SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-38 Fv heavy chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2021-04-24
Release date:	2021-05-12
Last modified:	2021-12-01
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope. Immunity, 54, 2021

4OIE

West Nile Virus Non-structural Protein NS1
Descriptor:	GLYCEROL, NON-STRUCTURAL PROTEIN NS1
Authors:	Edeling, M.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2014-01-19
Release date:	2014-03-05
Last modified:	2014-04-23
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Structural basis of Flavivirus NS1 assembly and antibody recognition. Proc.Natl.Acad.Sci.USA, 111, 2014

8EWF

CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Chimeric MXRA8 receptor: D1 from Duck MXRA8 and D2 from Mouse MXRA8, E1 envelope protein, ...
Authors:	Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:	2022-10-22
Release date:	2023-10-25
Method:	ELECTRON MICROSCOPY (3.92 Å)
Cite:	Alternate domain repeat usage in an alphavirus entry receptor enables host species expansion To Be Published

8DWW

Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 506.A08 heavy chain, 506.A08 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

8DWX

Chikungunya VLP in complex with neutralizing Fab 506.C01 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 506.C01 heavy chain, 506.C01 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.27 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

8DWY

Chikungunya VLP in complex with neutralizing Fab CHK-265 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CHK-265 heavy chain, CHK-265 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.18 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

1ML0

VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN COMPLEX WITH THE P8A VARIANT OF CC-CHEMOKINE MCP-1
Descriptor:	M3 Protein, Small Inducible Cytokine
Authors:	Alexander, J.M, Fremont, D.H.
Deposit date:	2002-08-29
Release date:	2002-11-13
Last modified:	2021-10-27
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Structural Basis of Chemokine Sequestration by a Herpesvirus Decoy Receptor Cell(Cambridge,Mass.), 111, 2002

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Total results:	115
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Fremont, D"