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PDB: 427 results

3NWA
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BU of 3nwa by Molmil
Glycoprotein B from Herpes simplex virus type 1, W174R mutant, low-pH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein B, MESO-ERYTHRITOL
Authors:Stampfer, S.D, Lou, H, Cohen, G.H, Eisenberg, R.J, Heldwein, E.E.
Deposit date:2010-07-09
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2629 Å)
Cite:Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1.
J.Virol., 84, 2010
7SQZ
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BU of 7sqz by Molmil
CSDaV wild-type
Descriptor: Citrus Sudden Death-associated Virus Capsid Protein
Authors:Guo, F, Matsumura, E.E, Falk, B.W.
Deposit date:2021-11-07
Release date:2022-05-25
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Citrus sudden death-associated virus as a new expression vector for rapid in planta production of heterologous proteins, chimeric virions, and virus-like particles.
Biotechnol Rep., 35, 2022
8ITN
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BU of 8itn by Molmil
Crystal structure of USP47apo catalytic domain
Descriptor: Ubiquitin carboxyl-terminal hydrolase 47, ZINC ION
Authors:Kim, E.E, Shin, S.C.
Deposit date:2023-03-22
Release date:2024-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional characterization of USP47 reveals a hot spot for inhibitor design.
Commun Biol, 6, 2023
8ITP
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BU of 8itp by Molmil
Crystal structure of USP47 catalytic domain complex with ubiquitin
Descriptor: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 47, ZINC ION
Authors:Kim, E.E, Shin, S.C.
Deposit date:2023-03-22
Release date:2024-03-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and functional characterization of USP47 reveals a hot spot for inhibitor design.
Commun Biol, 6, 2023
8CIM
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BU of 8cim by Molmil
BA.2-07 FAB IN COMPLEX WITH SARS-COV-2 BA.2.12.1 SPIKE GLYCOPROTEIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA.2-07 FAB HEAVY CHAIN, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
Deposit date:2023-02-10
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Isolation of a pair of potent broadly neutralizing mAb binding to RBD and SD1 domains of SARS-CoV-2
Res Sq, 2023
5VYL
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BU of 5vyl by Molmil
Crystal Structure of N-terminal half of Herpes Simplex virus Type 1 UL37 protein
Descriptor: Inner tegument protein, SODIUM ION
Authors:Koenigsberg, A, Heldwein, E.E.
Deposit date:2017-05-25
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Crystal Structure of the N-Terminal Half of the Traffic Controller UL37 from Herpes Simplex Virus 1.
J. Virol., 91, 2017
5WSN
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BU of 5wsn by Molmil
Structure of Japanese encephalitis virus
Descriptor: E protein, M protein
Authors:Wang, X, Zhu, L, Li, S, Yuan, S, Qin, C, Fry, E.E, Stuart, I.D, Rao, Z.
Deposit date:2016-12-07
Release date:2017-05-17
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Near-atomic structure of Japanese encephalitis virus reveals critical determinants of virulence and stability
Nat Commun, 8, 2017
7Z3Z
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BU of 7z3z by Molmil
Locked Wuhan SARS-CoV2 Prefusion Spike ectodomain with lipid bound
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, STEARIC ACID, ...
Authors:Duyvesteyn, H.M.E, Carrique, L, Ren, J, Stuart, D.I, Fry, E.E.
Deposit date:2022-03-03
Release date:2022-05-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The SARS-CoV-2 Spike harbours a lipid binding pocket which modulates stability of the prefusion trimer
bioRxiv, 2020
3E21
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BU of 3e21 by Molmil
Crystal structure of FAF-1 UBA Domain
Descriptor: FAS-associated factor 1
Authors:Park, J.K, Kim, E.E.
Deposit date:2008-08-05
Release date:2009-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of FAF-1 UBA Domain
To be Published
7SQY
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BU of 7sqy by Molmil
CSDaV GFP mutant
Descriptor: Citrus Sudden Death-associated Virus Capsid Protein,Green fluorescent protein,Citrus Sudden Death-associated Virus Capsid Protein
Authors:Guo, F, Matsumura, E.E, Falk, B.W.
Deposit date:2021-11-07
Release date:2022-05-25
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Citrus sudden death-associated virus as a new expression vector for rapid in planta production of heterologous proteins, chimeric virions, and virus-like particles.
Biotechnol Rep., 35, 2022
7T7I
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BU of 7t7i by Molmil
EBV nuclear egress complex
Descriptor: Nuclear egress protein 1, Nuclear egress protein 2, ZINC ION
Authors:Thorsen, M.K, Heldwein, E.E.
Deposit date:2021-12-15
Release date:2022-07-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.97 Å)
Cite:The nuclear egress complex of Epstein-Barr virus buds membranes through an oligomerization-driven mechanism.
Plos Pathog., 18, 2022
5EHU
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BU of 5ehu by Molmil
sfGFP mutant with unnatural amino acid 4-azidoethoxy-L-phenylalanine incorporated at the 149 site
Descriptor: Green fluorescent protein
Authors:Tookmanian, E.M, Phillips-Piro, C.M, Fenlon, E.E, Brewer, S.B.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Azidoethoxyphenylalanine as a Vibrational Reporter and Click Chemistry Partner in Proteins.
Chemistry, 21, 2015
5EJJ
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BU of 5ejj by Molmil
Crystal structure of UfSP from C.elegans
Descriptor: Ufm1-specific protease
Authors:Kim, K, Ha, B, Kim, E.E.
Deposit date:2015-11-02
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The MPN domain of Caenorhabditis elegans UfSP modulates both substrate recognition and deufmylation activity
Biochem. Biophys. Res. Commun., 476, 2016
6CIZ
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BU of 6ciz by Molmil
Human Cytochrome P450 17A1 in complex with inhibitor: abiraterone C6 nitrile
Descriptor: 6-cyano-17-(3-pyridyl)-androst-5,16-dien-3-ol, PROTOPORPHYRIN IX CONTAINING FE, Steroid 17-alpha-hydroxylase/17,20 lyase
Authors:Scott, E.E, Fehl, C.
Deposit date:2018-02-25
Release date:2018-06-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structure-Based Design of Inhibitors with Improved Selectivity for Steroidogenic Cytochrome P450 17A1 over Cytochrome P450 21A2.
J. Med. Chem., 61, 2018
2XBO
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BU of 2xbo by Molmil
Equine Rhinitis A Virus in Complex with its Sialic Acid Receptor
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, P1
Authors:Fry, E.E, Tuthill, T.J, Harlos, K, Walter, T.S, Rowlands, D.J, Stuart, D.I.
Deposit date:2010-04-14
Release date:2010-09-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (4 Å)
Cite:The Crystal Structure of Equine Rhinitis a Virus in Complex with its Sialic Acid Receptor.
J.Gen.Virol., 91, 2010
2WFF
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BU of 2wff by Molmil
Equine Rhinitis A Virus
Descriptor: P1
Authors:Fry, E.E, Tuthill, T.J, Harlos, K, Walter, T.S, Knowles, N.J, Gropelli, E, Rowlands, D.J, Stuart, D.I.
Deposit date:2009-04-05
Release date:2010-05-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Equine Rhinitis a Virus and its Low Ph Empty Particle: Clues Towards an Aphthovirus Entry Mechanism?
Plos Pathog., 5, 2009
2WS9
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BU of 2ws9 by Molmil
Equine Rhinitis A Virus at Low pH
Descriptor: P1
Authors:Fry, E.E, Tuthill, T.J, Harlos, K, Walter, T.S, Knowles, N.J, Gropelli, E, Rowlands, D.J, Stuart, D.I.
Deposit date:2009-09-04
Release date:2010-08-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Equine Rhinitis a Virus and its Low Ph Empty Particle: Clues Towards an Aphthovirus Entry Mechanism?
Plos Pathog., 5, 2009
2Z84
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BU of 2z84 by Molmil
Insights from crystal and solution structures of mouse UfSP1
Descriptor: Ufm1-specific protease 1
Authors:Ha, B.H, Ahn, H.C, Kang, S.H, Tanaka, K, Chung, C.H, Kim, E.E.
Deposit date:2007-08-30
Release date:2008-03-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for Ufm1 processing by UfSP1
J. Biol. Chem., 283, 2008
1ALK
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BU of 1alk by Molmil
REACTION MECHANISM OF ALKALINE PHOSPHATASE BASED ON CRYSTAL STRUCTURES. TWO METAL ION CATALYSIS
Descriptor: ALKALINE PHOSPHATASE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Kim, E.E, Wyckoff, W.
Deposit date:1993-03-03
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.
J.Mol.Biol., 218, 1991
4QPG
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BU of 4qpg by Molmil
Crystal structure of empty hepatitis A virus
Descriptor: CHLORIDE ION, Capsid protein VP0, Capsid protein VP1, ...
Authors:Wang, X, Ren, J, Gao, Q, Hu, Z, Sun, Y, Li, X, Rowlands, D.J, Yin, W, Wang, J, Stuart, D.I, Rao, Z, Fry, E.E.
Deposit date:2014-06-23
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Hepatitis A virus and the origins of picornaviruses.
Nature, 517, 2015
4QPI
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BU of 4qpi by Molmil
Crystal structure of hepatitis A virus
Descriptor: CHLORIDE ION, Capsid protein VP1, Capsid protein VP2, ...
Authors:Wang, X, Ren, J, Gao, Q, Hu, Z, Sun, Y, Li, X, Rowlands, D.J, Yin, W, Wang, J, Stuart, D.I, Rao, Z, Fry, E.E.
Deposit date:2014-06-23
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Hepatitis A virus and the origins of picornaviruses.
Nature, 517, 2015
4U4H
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BU of 4u4h by Molmil
Crystal Structure of HSV-1 UL21 N-terminal Domain
Descriptor: Tegument protein UL21
Authors:Metrick, C.M, Heldwein, E.E.
Deposit date:2014-07-23
Release date:2015-01-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Unusual Fold of Herpes Simplex Virus 1 UL21, a Multifunctional Tegument Protein.
J.Virol., 89, 2015
5O5B
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BU of 5o5b by Molmil
Poliovirus type 3 (strain Saukett) stabilized virus-like particle
Descriptor: Capsid proteins, VP1, VP2, ...
Authors:Bahar, M.W, Kotecha, A, Fry, E.E, Stuart, D.I.
Deposit date:2017-06-01
Release date:2017-07-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Plant-made polio type 3 stabilized VLPs-a candidate synthetic polio vaccine.
Nat Commun, 8, 2017
5O5P
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BU of 5o5p by Molmil
Poliovirus type 3 (strain Saukett) stabilized virus-like particle in complex with the pocket factor compound GPP3
Descriptor: 1-[5-[4-(ethoxyiminomethyl)phenoxy]-3-methyl-pentyl]-3-pyridin-4-yl-imidazol-2-one, Capsid proteins, VP4, ...
Authors:Bahar, M.W, Kotecha, A, Fry, E.E, Stuart, D.I.
Deposit date:2017-06-02
Release date:2017-07-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Plant-made polio type 3 stabilized VLPs-a candidate synthetic polio vaccine.
Nat Commun, 8, 2017
5OWX
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BU of 5owx by Molmil
Inside-out FMDV A10 capsid
Descriptor: Genome polyprotein
Authors:Kotecha, A, Malik, N, Fry, E.E, Stuart, D.I.
Deposit date:2017-09-04
Release date:2017-09-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Structures of foot and mouth disease virus pentamers: Insight into capsid dissociation and unexpected pentamer reassociation.
PLoS Pathog., 13, 2017

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