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PDB: 40926 results

7N06
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SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state
Descriptor: RNA (5'-R(*AP*UP*A)-3'), Uridylate-specific endoribonuclease
Authors:Frazier, M.N, Dillard, L.B, Krahn, J.M, Stanley, R.E.
Deposit date:2021-05-25
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Characterization of SARS2 Nsp15 nuclease activity reveals it's mad about U.
Nucleic Acids Res., 49, 2021
7NP7
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BU of 7np7 by Molmil
Structure of an intact ESX-5 inner membrane complex, Composite C1 model
Descriptor: ESX-5 secretion system ATPase EccB5, ESX-5 secretion system protein EccC5, ESX-5 secretion system protein EccD5, ...
Authors:Fahrenkamp, D, Bunduc, C.M, Wald, J, Ummels, R, Bitter, W, Houben, E.N.G, Marlovits, T.C.
Deposit date:2021-02-26
Release date:2021-06-02
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Structure and dynamics of a mycobacterial type VII secretion system.
Nature, 593, 2021
7NPR
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Structure of an intact ESX-5 inner membrane complex, Composite C3 model
Descriptor: ESX-5 secretion system ATPase EccB5, ESX-5 secretion system protein EccC5, ESX-5 secretion system protein EccD5, ...
Authors:Fahrenkamp, D, Bunduc, C.M, Wald, J, Ummels, R, Bitter, W, Houben, E.N.G, Marlovits, T.C.
Deposit date:2021-02-28
Release date:2021-06-02
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Structure and dynamics of a mycobacterial type VII secretion system.
Nature, 593, 2021
7NNH
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Cryo-EM structure of VAR2CSA FCR3 domain DBL5/6
Descriptor: Erythrocyte membrane protein 1
Authors:Wang, K.T, Dagil, R, Salanti, A, Gourdon, P.E.
Deposit date:2021-02-24
Release date:2021-06-02
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM reveals the architecture of placental malaria VAR2CSA and provides molecular insight into chondroitin sulfate binding.
Nat Commun, 12, 2021
7N33
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BU of 7n33 by Molmil
SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state
Descriptor: RNA (5'-R(*A)-D(*(UFT))-R(P*A)-3'), Uridylate-specific endoribonuclease
Authors:Frazier, M.N, Dillard, L.B, Krahn, J.M, Stanley, R.E.
Deposit date:2021-05-31
Release date:2021-06-09
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Characterization of SARS2 Nsp15 nuclease activity reveals it's mad about U.
Nucleic Acids Res., 49, 2021
6U8J
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BU of 6u8j by Molmil
Crystal structure of 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase/phospho-2-dehydro-3-deoxyheptonate aldolase (Aro3) from Candida auris
Descriptor: Phospho-2-dehydro-3-deoxyheptonate aldolase, UNKNOWN ATOM OR ION
Authors:Michalska, K, Evdokimova, E, Semper, C, Di Leo, R, Stogios, P.J, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-09-05
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Crystal structure of 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase/phospho-2-dehydro-3-deoxyheptonate aldolase (Aro3) from Candida auris
To Be Published
6OFH
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BU of 6ofh by Molmil
Structure of Salmonella type III secretion system needle filament
Descriptor: Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2019-03-29
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.
Plos Biol., 17, 2019
6XYC
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Truncated form of carbohydrate esterase from gut microbiota
Descriptor: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, Acetyl xylan esterase
Authors:Penttinen, L, Hakulinen, N, Master, E.
Deposit date:2020-01-30
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans.
Biotechnol Biofuels, 14, 2021
7AA0
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BU of 7aa0 by Molmil
Structural comparison of cellular retinoic acid binding protein I and II in the presence and absence of natural and synthetic ligands
Descriptor: (~{E})-3-[4-(4,4-dimethyl-1-propan-2-yl-2,3-dihydroquinolin-6-yl)phenyl]prop-2-enoic acid, Cellular retinoic acid-binding protein 2
Authors:Tomlinson, C.W.E, Cornish, K.A.S, Pohl, E.
Deposit date:2020-09-02
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure-functional relationship of cellular retinoic acid-binding proteins I and II interacting with natural and synthetic ligands.
Acta Crystallogr D Struct Biol, 77, 2021
7SHQ
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Structure of a functional construct of eukaryotic elongation factor 2 kinase in complex with calmodulin.
Descriptor: CALCIUM ION, Calmodulin-1, Eukaryotic elongation factor 2 kinase,Eukaryotic elongation factor 2 kinase, ...
Authors:Piserchio, A, Isiorho, E.A, Jeruzalmi, D, Dalby, K.N, Ghose, R.
Deposit date:2021-10-11
Release date:2022-04-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structural basis for the calmodulin-mediated activation of eukaryotic elongation factor 2 kinase.
Sci Adv, 8, 2022
8RY2
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Crystal Structure of ANV419, a novel IL-2/anti-IL-2 antibody fusion protein
Descriptor: ANV419 heavy-chain, ANV419 light-chain
Authors:Rondeau, J.M, Wirth, E.
Deposit date:2024-02-08
Release date:2024-07-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery and development of ANV419, an IL-2/anti-IL-2 antibody fusion protein with potent CD8+ T and natural killer cell-stimulating capacity for cancer immunotherapy.
Mabs, 16, 2024
5EAI
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BU of 5eai by Molmil
Crystal Structure of NAD(P)H dehydrogenase, quinone 1 complexed with a chemotherapeutic naphthoquinone E6a
Descriptor: (2~{R},3~{R})-2-[(2~{S},3~{S})-3-bromanyl-1,4-bis(oxidanylidene)-2,3-dihydronaphthalen-2-yl]-3-oxidanyl-2,3-dihydronaphthalene-1,4-dione, FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H dehydrogenase [quinone] 1
Authors:Pidugu, L.S, Mbimba, J.E, Ahmad, M, Pozharski, E, Sausville, E.A, Emadi, A, Toth, E.A.
Deposit date:2015-10-16
Release date:2016-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone.
Bmc Struct.Biol., 16, 2016
5LG3
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BU of 5lg3 by Molmil
X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) in complex with chlorpromazine
Descriptor: 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine, Gamma-aminobutyric-acid receptor subunit beta-1
Authors:Nys, M, Wijckmans, E, Farinha, A, Brams, M, Spurny, R, Ulens, C.
Deposit date:2016-07-05
Release date:2016-10-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.567 Å)
Cite:Allosteric binding site in a Cys-loop receptor ligand-binding domain unveiled in the crystal structure of ELIC in complex with chlorpromazine.
Proc.Natl.Acad.Sci.USA, 113, 2016
6S0S
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BU of 6s0s by Molmil
The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, ribostamycin B and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, Kanamycin B dioxygenase, ...
Authors:Mrugala, B, Porebski, P.J, Niedzialkowska, E, Minor, W, Borowski, T.
Deposit date:2019-06-18
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates.
Febs J., 288, 2021
6XZG
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BU of 6xzg by Molmil
Influenza C virus polymerase in complex with chicken ANP32A - Subclass 3
Descriptor: Influenza viral RNA (vRNA) promoter 47mer, LRRcap domain-containing protein, Polymerase acidic protein, ...
Authors:Carrique, L, Keown, J.R, Fan, H, Grimes, J.M, Fodor, E.
Deposit date:2020-02-04
Release date:2020-11-25
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Host ANP32A mediates the assembly of the influenza virus replicase.
Nature, 587, 2020
4X89
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BU of 4x89 by Molmil
NavMs voltage-gated sodium channal pore and C-terminal domain soaked with Silver nitrate
Descriptor: HEGA-10, Ion transport protein, PENTAETHYLENE GLYCOL, ...
Authors:Naylor, C.E, Bagneris, C, Wallace, B.A.
Deposit date:2014-12-10
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Molecular basis of ion permeability in a voltage-gated sodium channel.
Embo J., 35, 2016
8T4C
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BU of 8t4c by Molmil
Membrane-associated thioredoxin oxidoreductase FetE from Campylobacter jejuni
Descriptor: GLYCEROL, SULFATE ION, Thioredoxin oxidoreductase
Authors:Chan, A.C, Murphy, M.E.
Deposit date:2023-06-09
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dissecting components of the Campylobacter jejuni fetMP-fetABCDEF gene cluster in iron scavenging.
Biorxiv, 2023
7A43
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BU of 7a43 by Molmil
Fluoroacetate Dehalogenase measured by serial femtosecond crystallography
Descriptor: CHLORIDE ION, Fluoroacetate dehalogenase
Authors:Mehrabi, P, Schulz, E.C, Buecker, R.
Deposit date:2020-08-19
Release date:2021-04-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison.
Sci Adv, 7, 2021
7A42
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BU of 7a42 by Molmil
Fluoroacetate Dehalogenase measured by serial synchrotron crystallography
Descriptor: CHLORIDE ION, Fluoroacetate dehalogenase
Authors:Mehrabi, P, Schulz, E.C, Buecker, R.
Deposit date:2020-08-19
Release date:2021-04-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison.
Sci Adv, 7, 2021
7A45
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BU of 7a45 by Molmil
CO-bound sperm whale myoglobin measured by serial femtosecond crystallography
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Mehrabi, P, Schulz, E.C, Buecker, R.
Deposit date:2020-08-19
Release date:2021-04-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison.
Sci Adv, 7, 2021
7A44
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BU of 7a44 by Molmil
CO-bound sperm whale myoglobin measured by serial synchrotron crystallography
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Mehrabi, P, Schulz, E.C, Buecker, R.
Deposit date:2020-08-19
Release date:2021-04-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison.
Sci Adv, 7, 2021
6S52
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BU of 6s52 by Molmil
The crystal structure of glycogen phosphorylase in complex with 14
Descriptor: (2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(5-phenyl-1,2,3,4-tetrazol-2-yl)oxane-3,4,5-triol, Glycogen phosphorylase, muscle form, ...
Authors:Kyriakis, E, Solovou, T.G.A, Papaioannou, O.S.E, Skamnaki, V.T, Leonidas, D.D.
Deposit date:2019-06-29
Release date:2020-02-19
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:The architecture of hydrogen and sulfur sigma-hole interactions explain differences in the inhibitory potency of C-beta-d-glucopyranosyl thiazoles, imidazoles and an N-beta-d glucopyranosyl tetrazole for human liver glycogen phosphorylase and offer new insights to structure-based design.
Bioorg.Med.Chem., 28, 2020
8EGW
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BU of 8egw by Molmil
Complex of Fat4(EC1-4) bound to Dchs1(EC1-3)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Medina, E, Luca, V.C.
Deposit date:2022-09-13
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the planar cell polarity cadherins Fat4 and Dachsous1.
Nat Commun, 14, 2023
8OK8
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Variant Surface Glycoprotein VSG615
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Variant surface glycoprotein 615, ...
Authors:Zeelen, J.P, Stebbins, C.E, Chandra, M.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
8OK5
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Variant Surface Glycoprotein VSG11 monomer with iodine
Descriptor: IODIDE ION, Variant surface glycoprotein, alpha-D-glucopyranose, ...
Authors:Zeelen, J.P, Stebbins, C.E, Aresta-Branco, F.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023

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PDB entries from 2024-09-04

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