Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 41042 results

6SLZ
DownloadVisualize
BU of 6slz by Molmil
Crystal structure of human ROR gamma LBD in complex with a (quinolinoxymethyl)benzamide inverse agonist
Descriptor: (2~{S})-1-[2,4-bis(chloranyl)-3-[[2-methyl-4-(trifluoromethyl)quinolin-8-yl]oxymethyl]phenyl]carbonyl-~{N}-methyl-pyrrolidine-2-carboxamide, Nuclear receptor ROR-gamma
Authors:Amaudrut, J, Argiriadi, M.A, Barth, M, Breinlinger, E.C, Calderwood, D.J, Cusack, K.P, Kort, M.E, Montalbetti, C, Potin, D, Poupardin, O, Spitzer, L.
Deposit date:2019-08-21
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human ROR gamma LBD in complex with a (quinolinoxymethyl)benzamide inverse agonist
To Be Published
8EWT
DownloadVisualize
BU of 8ewt by Molmil
Bile salt hydrolase A from Lactobacillus gasseri bound to covalent probe
Descriptor: (5R)-5-{(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-9a,11a-dimethyl-7-[(prop-2-yn-1-yl)oxy]hexadecahydro-1H-cyclopenta[a]phenanthren-1-yl}-1-fluorohexan-2-one (non-preferred name), Conjugated bile salt hydrolase, SODIUM ION
Authors:Walker, M.E, Redinbo, M.R.
Deposit date:2022-10-24
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural diversity of bile salt hydrolases reveals rationale for substrate selectivity
To Be Published
6FRN
DownloadVisualize
BU of 6frn by Molmil
Structure of F420H2 oxidase (FprA) co-crystallized with 10mM Tb-Xo4 and calcium chloride
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CALCIUM ION, F420H2 oxidase (FprA), ...
Authors:Engilberge, S, Riobe, F, Di Pietro, S, Wagner, T, Shima, S, Girard, E, Dumont, E, Maury, O.
Deposit date:2018-02-16
Release date:2018-10-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
8EUM
DownloadVisualize
BU of 8eum by Molmil
MicroED structure of an Aeropyrum pernix protoglobin mutant
Descriptor: FE (III) ION, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Danelius, E, Gonen, T, Unge, J.T.
Deposit date:2022-10-18
Release date:2023-11-08
Last modified:2024-05-22
Method:ELECTRON CRYSTALLOGRAPHY (2.1 Å)
Cite:MicroED Structure of a Protoglobin Reactive Carbene Intermediate.
J.Am.Chem.Soc., 145, 2023
5KS2
DownloadVisualize
BU of 5ks2 by Molmil
RAWV_CTD (Helix form) of 16S/23S 2'-O-methyltransferase TlyA
Descriptor: 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, CHLORIDE ION
Authors:Kuiper, E.G, Conn, G.L.
Deposit date:2016-07-07
Release date:2017-01-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:A Novel Motif for S-Adenosyl-l-methionine Binding by the Ribosomal RNA Methyltransferase TlyA from Mycobacterium tuberculosis.
J. Biol. Chem., 292, 2017
6WU0
DownloadVisualize
BU of 6wu0 by Molmil
CryoEM structure of Burkholderia pseudomallei hopanoid biosynthesis-associated RND transporter HpnN
Descriptor: Hopanoid biosynthesis associated RND transporter like protein HpnN
Authors:Lyu, M, Yu, E.W.
Deposit date:2020-05-04
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Nat.Methods, 18, 2021
8OJL
DownloadVisualize
BU of 8ojl by Molmil
Human Mitochondrial Lon Y394E Mutant ADP Bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease homolog, mitochondrial
Authors:Kereiche, S, Bauer, J.A, Matyas, P, Novacek, J, Kutejova, E.
Deposit date:2023-03-24
Release date:2024-04-03
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions.
Sci Rep, 14, 2024
5DEN
DownloadVisualize
BU of 5den by Molmil
The First Structure of a Full-Length Mammalian Phenylalanine Hydroxylase Reveals the Architecture of an Auto-inhibited Tetramer
Descriptor: FE (III) ION, Phenylalanine-4-hydroxylase
Authors:Arturo, E.C, Loll, P.J, Jaffe, E.K.
Deposit date:2015-08-25
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:First structure of full-length mammalian phenylalanine hydroxylase reveals the architecture of an autoinhibited tetramer.
Proc.Natl.Acad.Sci.USA, 113, 2016
3IWD
DownloadVisualize
BU of 3iwd by Molmil
T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine
Descriptor: 5'-deoxy-5'-(dimethyl-lambda~4~-sulfanyl)adenosine, S-adenosylmethionine decarboxylase
Authors:Bale, S, Kavita, B, Ealick, S.E.
Deposit date:2009-09-02
Release date:2010-02-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Complexes of Thermotoga maritimaS-adenosylmethionine decarboxylase provide insights into substrate specificity.
Acta Crystallogr.,Sect.D, 66, 2010
4TPJ
DownloadVisualize
BU of 4tpj by Molmil
Selectivity mechanism of a bacterial homologue of the human drug peptide transporters PepT1 and PepT2
Descriptor: ALA-ALA-ALA, DODECYL-BETA-D-MALTOSIDE, Proton:oligopeptide symporter POT family, ...
Authors:Guettou, F, Quistgaard, E, Raba, M, Moberg, P, Low, C, Nordlund, P.
Deposit date:2014-06-07
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Selectivity mechanism of a bacterial homolog of the human drug-peptide transporters PepT1 and PepT2.
Nat.Struct.Mol.Biol., 21, 2014
1PPL
DownloadVisualize
BU of 1ppl by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION-STATE MIMICS BOUND TO PENICILLOPEPSIN: PHOSPHORUS-CONTAINING PEPTIDE ANALOGUES
Descriptor: N-(3-methylbutanoyl)-L-valyl-N-{(1S)-1-[(R)-[(1R)-1-benzyl-2-methoxy-2-oxoethoxy](hydroxy)phosphoryl]-3-methylbutyl}-L- valinamide, PENICILLOPEPSIN, SULFATE ION, ...
Authors:Fraser, M.E, James, M.N.G.
Deposit date:1992-06-01
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic analysis of transition-state mimics bound to penicillopepsin: phosphorus-containing peptide analogues.
Biochemistry, 31, 1992
5VB0
DownloadVisualize
BU of 5vb0 by Molmil
Crystal structure of fosfomycin resistance protein FosA3
Descriptor: Fosfomycin resistance protein FosA3, MANGANESE (II) ION, NICKEL (II) ION
Authors:Klontz, E, Guenther, S, Silverstein, Z, Sundberg, E.
Deposit date:2017-03-28
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.689 Å)
Cite:Structure and Dynamics of FosA-Mediated Fosfomycin Resistance in Klebsiella pneumoniae and Escherichia coli.
Antimicrob. Agents Chemother., 61, 2017
8OM7
DownloadVisualize
BU of 8om7 by Molmil
Human Mitochondrial Lon Y186E Mutant ADP Bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease homolog, mitochondrial
Authors:Kereiche, S, Bauer, J.A, Matyas, P, Novacek, J, Kutejova, E.
Deposit date:2023-03-31
Release date:2024-04-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions.
Sci Rep, 14, 2024
4TSM
DownloadVisualize
BU of 4tsm by Molmil
MBP-fusion protein of PilA1 from C. difficile R20291 residues 26-166
Descriptor: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, maltose-binding protein, pilin chimera, ...
Authors:Piepenbrink, K.H, Sundberg, E.J.
Deposit date:2014-06-19
Release date:2015-01-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Structural and Evolutionary Analyses Show Unique Stabilization Strategies in the Type IV Pili of Clostridium difficile.
Structure, 23, 2015
5KQZ
DownloadVisualize
BU of 5kqz by Molmil
Protease E35D-CaP2
Descriptor: N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide, Protease
Authors:Liu, Z, Poole, K.M, Mahon, B.P, McKenna, R, Fanucci, G.E.
Deposit date:2016-07-06
Release date:2016-09-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution.
J.Biol.Chem., 291, 2016
7S94
DownloadVisualize
BU of 7s94 by Molmil
Structure of the core postfusion porcine endogenous retrovirus fusion protein
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Endogenous retrovirus group S71 member 1 Env polyprotein
Authors:Dean, T.T, Lee, J.E.
Deposit date:2021-09-20
Release date:2022-01-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein.
Mbio, 13, 2022
8OIX
DownloadVisualize
BU of 8oix by Molmil
CryoEM structure of 20S Trichomonas vaginalis proteasome in complex with proteasome inhibitor Salinosporamid A
Descriptor: (3AR,6R,6AS)-6-((S)-((S)-CYCLOHEX-2-ENYL)(HYDROXY)METHYL)-6A-METHYL-4-OXO-HEXAHYDRO-2H-FURO[3,2-C]PYRROLE-6-CARBALDEHYDE, Family T1, proteasome alpha subunit, ...
Authors:Silhan, J, Fajtova, P, Boura, E.
Deposit date:2023-03-23
Release date:2024-04-10
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Tv20S proteasome in the complex with marizomib
To Be Published
6WQ7
DownloadVisualize
BU of 6wq7 by Molmil
Carbonic Anhydrase II Complexed with 2-((3-Aminopropyl)(phenethyl)amino)-N-(4-fluorobenzyl)-N-(4-sulfamoylphenethyl)acetamide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Carbonic anhydrase 2, N~2~-(3-aminopropyl)-N-[(4-fluorophenyl)methyl]-N~2~-(2-phenylethyl)-N-[2-(4-sulfamoylphenyl)ethyl]glycinamide, ...
Authors:Andring, J.T, Combs, J.E, Lomelino, C, McKenna, R.
Deposit date:2020-04-28
Release date:2020-06-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.304 Å)
Cite:Sulfonamide Inhibitors of Human Carbonic Anhydrases Designed through a Three-Tails Approach: Improving Ligand/Isoform Matching and Selectivity of Action.
J.Med.Chem., 63, 2020
8OKA
DownloadVisualize
BU of 8oka by Molmil
Human Mitochondrial Lon Y394F Mutant ADP Bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease homolog, mitochondrial
Authors:Kereiche, S, Bauer, J.A, Matyas, P, Novacek, J, Kutejova, E.
Deposit date:2023-03-28
Release date:2024-04-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions.
Sci Rep, 14, 2024
5FYJ
DownloadVisualize
BU of 5fyj by Molmil
Crystal Structure at 3.4 A Resolution of Fully Glycosylated HIV-1 Clade G X1193.c1 SOSIP.664 Prefusion Env Trimer in Complex with Broadly Neutralizing Antibodies PGT122, 35O22 and VRC01
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Stewart-Jones, G.B.E, Zhou, T, Thomas, P.V, Kwong, P.D.
Deposit date:2016-03-08
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B and G
Cell(Cambridge,Mass.), 165, 2016
7S53
DownloadVisualize
BU of 7s53 by Molmil
Structure of Sortase A from Streptococcus pyogenes with the b7-b8 loop sequence from Listeria monocytogenes Sortase A
Descriptor: Class A sortase, sortase A chimera
Authors:Johnson, D.A, Svendsen, J.E, Antos, J.M, Amacher, J.F.
Deposit date:2021-09-09
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and biochemical analyses of selectivity determinants in chimeric Streptococcus Class A sortase enzymes.
Protein Sci., 31, 2022
3FOF
DownloadVisualize
BU of 3fof by Molmil
Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), ...
Authors:Laponogov, I, Sohi, M.K, Veselkov, D.A, Pan, X.-S, Sawhney, R, Thompson, A.W, McAuley, K.E, Fisher, L.M, Sanderson, M.R.
Deposit date:2008-12-30
Release date:2009-02-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases
Nat.Struct.Mol.Biol., 16, 2009
4TUE
DownloadVisualize
BU of 4tue by Molmil
Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Fagan, C.E, Dunham, C.M.
Deposit date:2014-06-24
Release date:2015-05-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
2IPO
DownloadVisualize
BU of 2ipo by Molmil
E. coli Aspartate Transcarbamoylase complexed with N-phosphonacetyl-L-asparagine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Aspartate carbamoyltransferase catalytic chain, Aspartate carbamoyltransferase regulatory chain, ...
Authors:Cardia, J.P, Eldo, J, Xia, J, O'Day, E.M, Tsuruta, H, Kantrowitz, E.R.
Deposit date:2006-10-12
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Use of L-asparagine and N-phosphonacetyl-L-asparagine to investigate the linkage of catalysis and homotropic cooperativity in E. coli aspartate transcarbomoylase.
Proteins, 71, 2008
6G8R
DownloadVisualize
BU of 6g8r by Molmil
SP140 PHD-Bromodomain complex with scFv
Descriptor: 1,2-ETHANEDIOL, Nuclear body protein SP140, ZINC ION, ...
Authors:Fairhead, M, Graslund, S, Strain-Damerell, C, Picaud, S.S, Pike, A.C.W, Pinkas, D.M, Wigren, E, Preger, C, Persson Lotsholm, H, Ossipova, E, Filippakopoulos, P, Burgess-Brown, N.A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, von Delft, F, Structural Genomics Consortium (SGC)
Deposit date:2018-04-09
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:SP140 PHD-Bromodomain complex with scFv
To Be Published

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon