Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 40926 件

7MWY
DownloadVisualize
BU of 7mwy by Molmil
Structure of the drosophila STING cyclic dinucleotide binding domain
分子名称: STING
著者Slavik, K.M, Ragucci, A.E, Kranzusch, P.J.
登録日2021-05-17
公開日2021-07-21
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献cGAS-like receptors sense RNA and control 3'2'-cGAMP signalling in Drosophila.
Nature, 597, 2021
6BRW
DownloadVisualize
BU of 6brw by Molmil
JAK2 JH2 in complex with XMU-MP-1
分子名称: 4-[(5,10-dimethyl-6-oxo-6,10-dihydro-5H-pyrimido[5,4-b]thieno[3,2-e][1,4]diazepin-2-yl)amino]benzenesulfonamide, ACETATE ION, GLYCEROL, ...
著者Puleo, D.E, Schlessinger, J.
登録日2017-12-01
公開日2018-08-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.031 Å)
主引用文献JAK2 JH2 Binders
To Be Published
8OVF
DownloadVisualize
BU of 8ovf by Molmil
Human Mitochondrial Lon Y186F Mutant ADP Bound
分子名称: ADENOSINE-5'-DIPHOSPHATE, Lon protease homolog, mitochondrial
著者Kereiche, S, Bauer, J.A, Matyas, P, Novacek, J, Kutejova, E.
登録日2023-04-26
公開日2024-05-08
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (7.23 Å)
主引用文献Polyphosphate and tyrosine phosphorylation in the N-terminal domain of the human mitochondrial Lon protease disrupts its functions.
Sci Rep, 14, 2024
8OSO
DownloadVisualize
BU of 8oso by Molmil
GTPase HRAS in complex with Zn-cyclen under 500 MPa pressure
分子名称: 1,4,7,10-tetraazacyclododecane, GTPase HRas, MAGNESIUM ION, ...
著者Colloc'h, N, Prange, T, Girard, E, Kalbitzer, H.R.
登録日2023-04-19
公開日2024-05-08
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献High Pressure Promotes Binding of the Allosteric Inhibitor Zn 2+ -Cyclen in Crystals of Activated H-Ras.
Chemistry, 30, 2024
7BHS
DownloadVisualize
BU of 7bhs by Molmil
Crystal structure of MAT2a with quinazoline fragment 2 bound in the allosteric site
分子名称: 6-chloranyl-2-methoxy-4-phenyl-quinazoline, S-ADENOSYLMETHIONINE, S-adenosylmethionine synthase isoform type-2
著者Schimpl, M, De Fusco, C, Borjesson, U, Cheung, T, Collie, I, Evans, L, Narasimhan, P, Stubbs, C, Vazquez-Chantada, M, Wagner, D.J, Grondine, M, Tentarelli, S, Underwood, E, Argyrou, A, Bagal, S, Chiarparin, E, Robb, G, Scott, J.S.
登録日2021-01-11
公開日2021-04-21
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Fragment-Based Design of a Potent MAT2a Inhibitor and in Vivo Evaluation in an MTAP Null Xenograft Model.
J.Med.Chem., 64, 2021
8OSM
DownloadVisualize
BU of 8osm by Molmil
GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE
分子名称: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Colloc'h, N, Girard, E, Prange, T, Kalbitzer, H.R.
登録日2023-04-19
公開日2024-05-08
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献High Pressure Promotes Binding of the Allosteric Inhibitor Zn 2+ -Cyclen in Crystals of Activated H-Ras.
Chemistry, 30, 2024
8OSN
DownloadVisualize
BU of 8osn by Molmil
GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT AMBIENT PRESSURE
分子名称: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Colloc'h, N, Prange, T, Girard, E, Kalbitzer, H.R.
登録日2023-04-19
公開日2024-05-08
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献High Pressure Promotes Binding of the Allosteric Inhibitor Zn 2+ -Cyclen in Crystals of Activated H-Ras.
Chemistry, 30, 2024
7LXH
DownloadVisualize
BU of 7lxh by Molmil
Bacillus cereus DNA glycosylase AlkD bound to a CC1065-adenine nucleobase adduct and DNA containing an abasic site
分子名称: 7-{7-[(1R)-1-{[(4P)-6-amino-3H-purin-3-yl]methyl}-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl]-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl}-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carboxamide, CALCIUM ION, DNA (5'-D(*AP*GP*CP*AP*AP*(ORP)P*GP*GP*C)-3'), ...
著者Mullins, E.A, Eichman, B.F.
登録日2021-03-03
公開日2021-11-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.667 Å)
主引用文献Structural evolution of a DNA repair self-resistance mechanism targeting genotoxic secondary metabolites.
Nat Commun, 12, 2021
6NPS
DownloadVisualize
BU of 6nps by Molmil
Crystal structure of GH115 enzyme AxyAgu115A from Amphibacillus xylanus
分子名称: AxyAgu115A, CHLORIDE ION, GLYCEROL
著者Stogios, P.J, Skarina, T, Di Leo, R, Yan, R, Master, E, Savchenko, A.
登録日2019-01-18
公開日2020-07-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural characterization of the family GH115 alpha-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with alpha-arabinofuranosidases.
N Biotechnol, 2021
2IXR
DownloadVisualize
BU of 2ixr by Molmil
BipD of Burkholderia Pseudomallei
分子名称: MEMBRANE ANTIGEN
著者Roversi, P, Johnson, S, Field, T, Deane, J.E, Galyov, E.E, Lea, S.M.
登録日2006-07-10
公開日2006-11-02
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Self-Chaperoning of the Type III Secretion System Needle Tip Proteins Ipad and Bipd.
J.Biol.Chem., 282, 2007
8P1F
DownloadVisualize
BU of 8p1f by Molmil
X-ray structure of acetylcholine-binding protein (AChBP) in complex with FL001909.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-azanyl-1-phenyl-piperidine-4-carboxylic acid, Acetylcholine-binding protein
著者Cederfelt, D, Boronat, P, Dobritzsch, D, Hennig, S, Fitzgerald, E.A, de Esch, I.J.P, Danielson, U.H.
登録日2023-05-12
公開日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Elucidating the regulation of ligand gated ion channels via biophysical studies of ligand-induced conformational dynamics of acetylcholine binding proteins
To Be Published
8P22
DownloadVisualize
BU of 8p22 by Molmil
X-ray structure of acetylcholine-binding protein (AChBP) in complex with IOTA376.
分子名称: 2-[(2~{R})-1-ethylimidazolidin-2-yl]-6-pyridin-2-yl-pyridine, Acetylcholine-binding protein, GLYCEROL, ...
著者Cederfelt, D, Boronat, P, Dobritzsch, D, Hennig, S, Fitzgerald, E.A, de Esch, I.J.P, Danielson, U.H.
登録日2023-05-14
公開日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Elucidating the regulation of ligand gated ion channels via biophysical studies of ligand-induced conformational dynamics of acetylcholine binding proteins
To Be Published
6BN7
DownloadVisualize
BU of 6bn7 by Molmil
Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET23 PROTAC.
分子名称: Bromodomain-containing protein 4, DNA damage-binding protein 1, Protein cereblon, ...
著者Nowak, R.P, DeAngelo, S.L, Buckley, D, Bradner, J.E, Fischer, E.S.
登録日2017-11-16
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Plasticity in binding confers selectivity in ligand-induced protein degradation.
Nat. Chem. Biol., 14, 2018
6B4V
DownloadVisualize
BU of 6b4v by Molmil
Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2017-09-27
公開日2018-02-07
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Mechanism of Inhibition of Translation Termination by Blasticidin S.
J. Mol. Biol., 430, 2018
8QFD
DownloadVisualize
BU of 8qfd by Molmil
UFL1 E3 ligase bound 60S ribosome
分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Makhlouf, L, Kulathu, Y, Zeqiraj, E.
登録日2023-09-04
公開日2024-02-21
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons.
Nature, 627, 2024
6HTB
DownloadVisualize
BU of 6htb by Molmil
Yeast 20S proteasome with human beta2c (S171G)
分子名称: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
著者Huber, E.M, Groll, M.
登録日2018-10-03
公開日2019-01-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6HUQ
DownloadVisualize
BU of 6huq by Molmil
Yeast 20S proteasome with human beta2c (S171G) in complex with 20
分子名称: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
著者Huber, E.M, Groll, M.
登録日2018-10-09
公開日2019-01-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
6FLD
DownloadVisualize
BU of 6fld by Molmil
Carbamylated T. californica acetylcholineterase bound to uncharged hybrid reactivator 1
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-[(~{E})-hydroxyiminomethyl]-6-[4-(1,2,3,4-tetrahydroacridin-9-ylamino)butyl]pyridin-3-ol, ...
著者De la Mora, E, Santoni, G, de Souza, J, Sussman, J, Silman, I, Baati, R, Weik, M, Nachon, F.
登録日2018-01-25
公開日2018-08-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure-Based Optimization of Nonquaternary Reactivators of Acetylcholinesterase Inhibited by Organophosphorus Nerve Agents.
J. Med. Chem., 61, 2018
6HVX
DownloadVisualize
BU of 6hvx by Molmil
Yeast 20S proteasome in complex with 4
分子名称: (2~{S})-~{N}-[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
著者Huber, E.M, Groll, M.
登録日2018-10-11
公開日2019-01-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
5FN7
DownloadVisualize
BU of 5fn7 by Molmil
Crystal structure of human CD45 extracellular region, domains d1-d2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C
著者Chang, V.T, Fernandes, R.A, Ganzinger, K.A, Lee, S.F, Siebold, C, McColl, J, Jonsson, P, Palayret, M, Harlos, K, Coles, C.H, Jones, E.Y, Lui, Y, Huang, E, Gilbert, R.J.C, Klenerman, D, Aricescu, A.R, Davis, S.J.
登録日2015-11-10
公開日2016-03-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Initiation of T Cell Signaling by Cd45 Segregation at 'Close Contacts'.
Nat.Immunol., 17, 2016
1TM7
DownloadVisualize
BU of 1tm7 by Molmil
crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 M59Y mutant
分子名称: CALCIUM ION, CITRIC ACID, PENTAETHYLENE GLYCOL, ...
著者Radisky, E.S, Kwan, G, Karen Lu, C.J, Koshland Jr, D.E.
登録日2004-06-10
公開日2004-11-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Binding, Proteolytic, and Crystallographic Analyses of Mutations at the Protease-Inhibitor Interface of the Subtilisin BPN'/Chymotrypsin Inhibitor 2 Complex(,).
Biochemistry, 43, 2004
8R2I
DownloadVisualize
BU of 8r2i by Molmil
Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas reinhardtii
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, ...
著者Fadeeva, M, Klaiman, D, Kandiah, E, Nelson, N.
登録日2023-11-06
公開日2024-01-31
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of native photosystem II assembly intermediate from Chlamydomonas reinhardtii .
Front Plant Sci, 14, 2023
1KMI
DownloadVisualize
BU of 1kmi by Molmil
CRYSTAL STRUCTURE OF AN E.COLI CHEMOTAXIS PROTEIN, CHEZ
分子名称: BERYLLIUM TRIFLUORIDE ION, BICINE, Chemotaxis protein cheY, ...
著者Zhao, R, Collins, E.J, Bourret, R.B, Silversmith, R.E.
登録日2001-12-16
公開日2002-07-24
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure and catalytic mechanism of the E. coli chemotaxis phosphatase CheZ.
Nat.Struct.Biol., 9, 2002
7P84
DownloadVisualize
BU of 7p84 by Molmil
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with ONB-SAM (2-nitro benzyme S-adenosyl-methionine)
分子名称: MAGNESIUM ION, S-adenosylmethionine synthase, TRIPHOSPHATE, ...
著者Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D.
登録日2021-07-21
公開日2021-11-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.054 Å)
主引用文献Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.
Chembiochem, 23, 2022
7P8M
DownloadVisualize
BU of 7p8m by Molmil
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with DMNB-SAM (4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine)
分子名称: 4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine, MAGNESIUM ION, S-adenosylmethionine synthase, ...
著者Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D.
登録日2021-07-23
公開日2021-11-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.
Chembiochem, 23, 2022

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon