Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 225 件
6T8L
DownloadVisualize
BU of 6t8l by Molmil
Crystal structure of Bacteroides thetaiotamicron EndoBT-3987 with Man9GlcNAc product in P212121
分子名称: CALCIUM ION, Endo-beta-N-acetylglucosaminidase F1, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Trastoy, B, Du, J.J, Klontz, E.H, Cifuente, J.O, Sundberg, E.J, Guerin, M.E.
登録日2019-10-24
公開日2020-02-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of mammalian high-mannose N-glycan processing by human gut Bacteroides.
Nat Commun, 11, 2020
6TCW
DownloadVisualize
BU of 6tcw by Molmil
Crystal structure of Bacteroides thetaiotamicron EndoBT-3987 with Man5GlcNAc product
分子名称: CALCIUM ION, Endo-beta-N-acetylglucosaminidase F1, GLYCEROL, ...
著者Trastoy, B, Du, J.J, Klontz, E.H, Cifuente, J.O, Sundberg, E.J, Guerin, M.E.
登録日2019-11-06
公開日2020-02-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Structural basis of mammalian high-mannose N-glycan processing by human gut Bacteroides.
Nat Commun, 11, 2020
6YX5
DownloadVisualize
BU of 6yx5 by Molmil
Structure of DrrA from Legionella pneumophilia in complex with human Rab8a
分子名称: MAGNESIUM ION, Multifunctional virulence effector protein DrrA, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Schneider, S, Du, J, von Wrisberg, M.K, Lang, K, Itzen, A.
登録日2020-04-30
公開日2020-12-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1.
Nat Commun, 12, 2021
5Z8L
DownloadVisualize
BU of 5z8l by Molmil
crystal structure of Arabidopsis thaliana EBS in complex with an H3K27me3 peptide
分子名称: Chromatin remodeling protein EBS, H3K27me3 peptide, ZINC ION
著者Yang, Z, Du, J.
登録日2018-01-31
公開日2018-07-25
最終更新日2018-09-19
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis.
Nat. Genet., 50, 2018
5ZWZ
DownloadVisualize
BU of 5zwz by Molmil
Crystal structure of Arabidopsis thaliana AGDP1 AGD34
分子名称: Agenet domain-containing protein
著者Du, X, Du, J.
登録日2018-05-17
公開日2018-11-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
Nat Commun, 9, 2018
5ZWX
DownloadVisualize
BU of 5zwx by Molmil
Crystal structure of Raphanus sativus AGDP1 AGD12 in complex with an H3K9me2 peptide
分子名称: DUF724 domain-containing protein 6-like, H3(1-15)K9me2 peptide
著者Du, X, Du, J.
登録日2018-05-17
公開日2018-11-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
Nat Commun, 9, 2018
7SQ1
DownloadVisualize
BU of 7sq1 by Molmil
BG505.MD39TS Env trimer in complex with Fab from antibody C05
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, C05 Fab Light chain, ...
著者Moore, A, Du, J, Xu, Z, Walker, S, Kulp, D.W, Pallesen, J.
登録日2021-11-04
公開日2022-06-22
最終更新日2022-12-07
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Induction of tier-2 neutralizing antibodies in mice with a DNA-encoded HIV envelope native like trimer.
Nat Commun, 13, 2022
7O12
DownloadVisualize
BU of 7o12 by Molmil
ABC transporter NosDFY, AMPPNP-bound in GDN
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable ABC transporter ATP-binding protein NosF, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
3IWP
DownloadVisualize
BU of 3iwp by Molmil
Crystal structure of human copper homeostasis protein CutC
分子名称: Copper homeostasis protein cutC homolog
著者Li, Y, Du, J, Zhang, P, Ding, J.
登録日2009-09-03
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of human copper homeostasis protein CutC reveals a potential copper-binding site
To be Published
8DGG
DownloadVisualize
BU of 8dgg by Molmil
Structure of glycosylated LAG-3 homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Silberstein, J.L, Mathews, I.I, Frank, J.A, Chan, K.-W, Fernandez, D, Du, J, Wang, J, Kong, X.-P, Cochran, J.R.
登録日2022-06-23
公開日2022-08-17
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (3.78 Å)
主引用文献Structural insights reveal interplay between LAG-3 homodimerization, ligand binding, and function.
Proc.Natl.Acad.Sci.USA, 121, 2024
5VSR
DownloadVisualize
BU of 5vsr by Molmil
ABA-mimicking ligand AMF4 in complex with ABA receptor PYL2 and PP2C HAB1
分子名称: Abscisic acid receptor PYL2, MAGNESIUM ION, N-(2-oxo-1-propyl-1,2,3,4-tetrahydroquinolin-6-yl)-1-(2,3,5,6-tetrafluoro-4-methylphenyl)methanesulfonamide, ...
著者Cao, M.-J, Zhang, Y.-L, Liu, X, Huang, H, Zhou, X.E, Wang, W.-L, Zeng, A, Zhao, C.-Z, Si, T, Du, J.-M, Wu, W.-W, Wang, F.-X, Xu, H.X, Zhu, J.-K.
登録日2017-05-12
公開日2017-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.618 Å)
主引用文献Combining chemical and genetic approaches to increase drought resistance in plants.
Nat Commun, 8, 2017
5VRO
DownloadVisualize
BU of 5vro by Molmil
ABA-mimicking ligand AMF1beta in complex with ABA receptor PYL2 and PP2C HAB1
分子名称: 1-(3-fluoro-4-methylphenyl)-N-(2-oxo-1-propyl-1,2,3,4-tetrahydroquinolin-6-yl)methanesulfonamide, Abscisic acid receptor PYL2, MAGNESIUM ION, ...
著者Cao, M.-J, Zhang, Y.-L, Liu, X, Huang, H, Zhou, X.E, Wang, W.-L, Zeng, A, Zhao, C.-Z, Si, T, Du, J.-M, Wu, W.-W, Wang, F.-X, Xu, H.X, Zhu, J.-K.
登録日2017-05-11
公開日2017-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.257 Å)
主引用文献Combining chemical and genetic approaches to increase drought resistance in plants.
Nat Commun, 8, 2017
5VT7
DownloadVisualize
BU of 5vt7 by Molmil
ABA-mimicking ligand AMC1beta in complex with ABA receptor PYL2 and PP2C HAB1
分子名称: 1-(3-chloro-4-methylphenyl)-N-(2-oxo-1-propyl-1,2,3,4-tetrahydroquinolin-6-yl)methanesulfonamide, Abscisic acid receptor PYL2, MAGNESIUM ION, ...
著者Cao, M.-J, Zhang, Y.-L, Liu, X, Huang, H, Zhou, X.E, Wang, W.-L, Zeng, A, Zhao, C.-Z, Si, T, Du, J.-M, Wu, W.-W, Wang, F.-X, Xu, H.X, Zhu, J.-K.
登録日2017-05-15
公開日2017-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.624 Å)
主引用文献Combining chemical and genetic approaches to increase drought resistance in plants.
Nat Commun, 8, 2017
7PUK
DownloadVisualize
BU of 7puk by Molmil
Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis in complex with Man5 product
分子名称: Beta-N-acetylhexosaminidase, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Garcia-Alija, M, Du, J.J, Trastoy, B, Sundberg, E.J, Guerin, M.
登録日2021-09-30
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.
Nat Commun, 13, 2022
7PUL
DownloadVisualize
BU of 7pul by Molmil
Crystal structure of Endoglycosidase E GH20 domain from Enterococcus faecalis
分子名称: Beta-N-acetylhexosaminidase, CALCIUM ION, GLY-ALA-GLY-ALA-ALA, ...
著者Garcia-Alija, M, Du, J.J, Trastoy, B, Sundberg, E.J, Guerin, M.
登録日2021-09-30
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.
Nat Commun, 13, 2022
7PUJ
DownloadVisualize
BU of 7puj by Molmil
Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis
分子名称: Beta-N-acetylhexosaminidase, CHLORIDE ION, ZINC ION
著者Garcia-Alija, M, Du, J.J, Trastoy, B, Sundberg, E.J, Guerin, M.E.
登録日2021-09-30
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.752 Å)
主引用文献Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.
Nat Commun, 13, 2022
7O0Y
DownloadVisualize
BU of 7o0y by Molmil
ABC transporter NosDFY, nucleotide-free in GDN
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O15
DownloadVisualize
BU of 7o15 by Molmil
ABC transporter NosDFY, nucleotide-free in lipid nanodisc, R-domain 2
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O16
DownloadVisualize
BU of 7o16 by Molmil
ABC transporter NosDFY, nucleotide-free in lipid nanodisc, R-domain 3
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O14
DownloadVisualize
BU of 7o14 by Molmil
ABC transporter NosDFY, nucleotide-free in lipid nanodisc, R-domain 1
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O10
DownloadVisualize
BU of 7o10 by Molmil
ABC transporter NosDFY, nucleotide-free in GDN, R-domain 2
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O17
DownloadVisualize
BU of 7o17 by Molmil
ABC transporter NosDFY E154Q, ATP-bound in lipid nanodisc
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O11
DownloadVisualize
BU of 7o11 by Molmil
ABC transporter NosDFY, nucleotide-free in GDN, R-domain 1
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-04-13
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O0Z
DownloadVisualize
BU of 7o0z by Molmil
ABC transporter NosFY, nucleotide-free in GDN
分子名称: Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter permease protein NosY
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-11-02
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022
7O13
DownloadVisualize
BU of 7o13 by Molmil
ABC transporter NosDFY, nucleotide-free in lipid nanodisc
分子名称: MAGNESIUM ION, Probable ABC transporter ATP-binding protein NosF, Probable ABC transporter binding protein NosD, ...
著者Mueller, C, Zhang, L, Lu, W, Einsle, O, Du, J.
登録日2021-03-28
公開日2022-11-02
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular interplay of an assembly machinery for nitrous oxide reductase.
Nature, 608, 2022

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon