Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 85 件
6ULH
DownloadVisualize
BU of 6ulh by Molmil
Structure of MavC in complex with its substrate in R3 spacegroup
分子名称: LPG2147 (MavC), Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Iyer, S, Puvar, K, Das, C.
登録日2019-10-08
公開日2020-05-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.968 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6UMS
DownloadVisualize
BU of 6ums by Molmil
Crystal structure of MavC in complex with its substrate mimic in C222(1) space group
分子名称: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Iyer, S, Puvar, K, Das, C.
登録日2019-10-10
公開日2020-05-27
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.344 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
6UMP
DownloadVisualize
BU of 6ump by Molmil
Crystal structure of MavC in complex with substrate mimic in P65 space group
分子名称: MavC, Ubiquitin, Ubiquitin-conjugating enzyme E2 N
著者Puvar, K, Iyer, S, Luo, Z.Q, Das, C.
登録日2019-10-10
公開日2020-05-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Legionella effector MavC targets the Ube2N~Ub conjugate for noncanonical ubiquitination.
Nat Commun, 11, 2020
5UBW
DownloadVisualize
BU of 5ubw by Molmil
Structure of catalytic domain of Ssel
分子名称: 1,2-ETHANEDIOL, Deubiquitinase SseL
著者Shrestha, R, Das, C.
登録日2016-12-21
公開日2017-12-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.394 Å)
主引用文献Structure of catalytic domain of Ssel
To Be Published
3RU0
DownloadVisualize
BU of 3ru0 by Molmil
Cocrystal structure of human SMYD3 with inhibitor Sinefungin bound
分子名称: SET and MYND domain-containing protein 3, SINEFUNGIN, ZINC ION
著者Foreman, K.W, Brown, M, Park, F, Emtage, S, Harriss, J, Das, C, Zhu, L, Crew, A, Arnold, L, Shaaban, S, Tucker, P.
登録日2011-05-04
公開日2011-05-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.849 Å)
主引用文献Structural and Functional Profiling of the Human Histone Methyltransferase SMYD3.
Plos One, 6, 2011
3RZU
DownloadVisualize
BU of 3rzu by Molmil
The Crystal Structure of the Catalytic Domain of AMSH
分子名称: STAM-binding protein, ZINC ION
著者Davies, C.W, Das, C.
登録日2011-05-12
公開日2011-10-19
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and Thermodynamic Comparison of the Catalytic Domain of AMSH and AMSH-LP: Nearly Identical Fold but Different Stability.
J.Mol.Biol., 413, 2011
3RZV
DownloadVisualize
BU of 3rzv by Molmil
The Crystal Structure of a E280A Mutant of the Catalytic Domain of AMSH
分子名称: STAM-binding protein, ZINC ION
著者Davies, C.W, Das, C.
登録日2011-05-12
公開日2011-10-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Structural and Thermodynamic Comparison of the Catalytic Domain of AMSH and AMSH-LP: Nearly Identical Fold but Different Stability.
J.Mol.Biol., 413, 2011
3IRT
DownloadVisualize
BU of 3irt by Molmil
Crystal Structure of the I93M Mutant of Ubiquitin Carboxy-terminal Hydrolase L1
分子名称: CHLORIDE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Maiti, T.K, Das, C.
登録日2009-08-24
公開日2010-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Ubiquitin vinyl methyl ester binding orients the misaligned active site of the ubiquitin hydrolase UCHL1 into productive conformation.
Proc.Natl.Acad.Sci.USA, 107, 2010
4JPX
DownloadVisualize
BU of 4jpx by Molmil
Crystal structure of phenylalanine hydroxylase S203P mutant from Chromobacterium violaceum
分子名称: COBALT (II) ION, PHENYLALANINE, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2013-03-19
公開日2013-08-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献An additional substrate binding site in a bacterial phenylalanine hydroxylase.
Eur.Biophys.J., 42, 2013
4JKJ
DownloadVisualize
BU of 4jkj by Molmil
Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
分子名称: SULFATE ION, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Ringe, D, Petsko, G.A, Das, C.
登録日2013-03-09
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.151 Å)
主引用文献Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
To be Published
4JXE
DownloadVisualize
BU of 4jxe by Molmil
Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AMSH-like protease sst2, ...
著者Shrestha, R.K, Das, C.
登録日2013-03-28
公開日2014-04-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.451 Å)
主引用文献Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
Biochemistry, 53, 2014
4JPY
DownloadVisualize
BU of 4jpy by Molmil
Iron and phenylalanine bound crystal structure of phenylalanine hydroxylase from Chromobacterium violaceum
分子名称: FE (III) ION, PHENYLALANINE, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2013-03-19
公開日2013-08-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献An additional substrate binding site in a bacterial phenylalanine hydroxylase.
Eur.Biophys.J., 42, 2013
4K1R
DownloadVisualize
BU of 4k1r by Molmil
Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ...
著者Shrestha, R.K, Das, C.
登録日2013-04-05
公開日2014-04-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.632 Å)
主引用文献Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
Biochemistry, 53, 2014
5KKV
DownloadVisualize
BU of 5kkv by Molmil
Metal-mediated coiled-coil GCN4-p2L peptide assembly crystal
分子名称: GCN4-p2L
著者Nepal, M, Sheedlo, M.J, Das, C, Chmielewski, J.
登録日2016-06-22
公開日2016-08-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Accessing Three-Dimensional Crystals with Incorporated Guests through Metal-Directed Coiled-Coil Peptide Assembly.
J.Am.Chem.Soc., 138, 2016
4DM9
DownloadVisualize
BU of 4dm9 by Molmil
The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK
分子名称: Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Chaney, J, Korbel, G, Ringe, D, Petsko, G.A, Ploegh, H, Das, C.
登録日2012-02-07
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The co-crystal structure of ubiquitin carboxy-terminal hydrolase L1 (UCHL1) with a tripeptide fluoromethyl ketone (Z-VAE(OMe)-FMK).
Bioorg.Med.Chem.Lett., 22, 2012
4I6N
DownloadVisualize
BU of 4i6n by Molmil
Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ...
著者Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C.
登録日2012-11-29
公開日2013-05-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity.
Biochemistry, 52, 2013
3TK2
DownloadVisualize
BU of 3tk2 by Molmil
Crystallographic structure of phenylalanine hydroxylase from Chromobacterium violaceum cocrystallized with phenylalanine in a site distal to the active site
分子名称: COBALT (II) ION, PHENYLALANINE, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2011-08-25
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献An additional substrate binding site in a bacterial phenylalanine hydroxylase.
Eur.Biophys.J., 42, 2013
3TK4
DownloadVisualize
BU of 3tk4 by Molmil
Crystal structure of phenylalanine hydroxylase from Chromobacterium violaceum bound to cobalt
分子名称: COBALT (II) ION, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2011-08-25
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献An additional substrate binding site in a bacterial phenylalanine hydroxylase.
Eur.Biophys.J., 42, 2013
4Q3Y
DownloadVisualize
BU of 4q3y by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139A mutation
分子名称: COBALT (II) ION, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2014-04-12
公開日2015-02-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q3Z
DownloadVisualize
BU of 4q3z by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139K mutation
分子名称: COBALT (II) ION, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2014-04-12
公開日2015-02-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q3W
DownloadVisualize
BU of 4q3w by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139E mutation
分子名称: 1,2-ETHANEDIOL, COBALT (II) ION, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2014-04-12
公開日2015-02-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q3X
DownloadVisualize
BU of 4q3x by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139N mutation
分子名称: COBALT (II) ION, Phenylalanine-4-hydroxylase
著者Ronau, J.A, Abu-Omar, M.M, Das, C.
登録日2014-04-12
公開日2015-02-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4OUF
DownloadVisualize
BU of 4ouf by Molmil
Crystal Structure of CBP bromodomain
分子名称: 1,2-ETHANEDIOL, CREB-binding protein, DI(HYDROXYETHYL)ETHER
著者Roy, S, Das, C, Tyler, J.K, Kutateladze, T.G.
登録日2014-02-17
公開日2014-03-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Binding of the histone chaperone ASF1 to the CBP bromodomain promotes histone acetylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4NQL
DownloadVisualize
BU of 4nql by Molmil
The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in complex with lysine 63-linked diubiquitin
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, Ubiquitin, ...
著者Ronau, J.A, Shrestha, R.K, Das, C.
登録日2013-11-25
公開日2014-10-08
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Insights into the mechanism of deubiquitination by JAMM deubiquitinases from cocrystal structures of the enzyme with the substrate and product.
Biochemistry, 53, 2014
4PQT
DownloadVisualize
BU of 4pqt by Molmil
Insights into the mechanism of deubiquitination by JAMM deubiquitinases from co-crystal structures of enzyme with substrate and product
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, Protein UBBP4, ...
著者Shrestha, R.K, Ronau, J.A, Das, C.
登録日2014-03-04
公開日2014-06-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
Biochemistry, 53, 2014

227561

件を2024-11-20に公開中

PDB statisticsPDBj update infoContact PDBjnumon