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PDB: 161 results

2BFN
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The crystal structure of the complex of the haloalkane dehalogenase LinB with the product of dehalogenation reaction 1,2-dichloropropane.
Descriptor: (2S)-2,3-DICHLOROPROPAN-1-OL, CALCIUM ION, CHLORIDE ION, ...
Authors:Banas, P, Otyepka, M, Jerabek, P, Vevodova, J, Bohac, M, Damborsky, J.
Deposit date:2004-12-09
Release date:2006-06-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Weak Activity of Haloalkane Dehalogenase Linb with 1,2,3-Trichloropropane Revealed by X-Ray Crystallography and Microcalorimetry
Appl.Environ.Microbiol., 73, 2007
4BS1
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MuB is an AAAplus ATPase that forms helical filaments to control target selection for DNA transposition
Descriptor: ADENOSINE-5'-DIPHOSPHATE, TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)
Authors:Mizuno, N, Dramicanin, M, Mizuuchi, M, Adam, J, Wang, Y, Han, Y.W, Yang, W, Steven, A.C, Mizuuchi, K, Ramon-Maiques, S.
Deposit date:2013-06-06
Release date:2013-07-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Mub is an Aaa+ ATPase that Forms Helical Filaments to Control Target Selection for DNA Transposition.
Proc.Natl.Acad.Sci.USA, 110, 2013
1QS8
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Crystal structure of the P. vivax aspartic proteinase plasmepsin complexed with the inhibitor pepstatin A
Descriptor: ACETATE ION, PEPSTATIN A, PLASMEPSIN
Authors:Khazanovich Bernstein, N, Cherney, M.M, Yowell, C.A, Dame, J.B, James, M.N.G.
Deposit date:1999-06-25
Release date:1999-07-07
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the activation of P. vivax plasmepsin.
J.Mol.Biol., 329, 2003
4K2A
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BU of 4k2a by Molmil
Crystal structure of haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94
Descriptor: ACETATE ION, CHLORIDE ION, Haloalkane dehalogenase
Authors:Prudnikova, T, Chaloupkova, R, Rezacova, P, Mozga, T, Koudelakova, T, Sato, Y, Kuty, M, Nagata, Y, Damborsky, J, Kuta Smatanova, I, Structure 2 Function Project (S2F)
Deposit date:2013-04-08
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Acta Crystallogr.,Sect.D, 70, 2014
3BGE
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Crystal structure of the C-terminal fragment of AAA+ATPase from Haemophilus influenzae
Descriptor: Predicted ATPase, SULFATE ION
Authors:Ramagopal, U.A, Patskovsky, Y, Bonanno, J.B, Meyer, A.J, Toro, R, Freeman, J, Adams, J, Koss, J, Maletic, M, Gheyi, T, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-11-26
Release date:2008-01-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the C-terminal fragment of AAA+ATPase from Haemophilus influenzae.
To be Published
2JNK
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Solution structure of a dockerin-containing modular pair from a family 84 glycoside hydrolase
Descriptor: Hyalurononglucosaminidase
Authors:Chitayat, S, Adams, J.J, Bayer, E.A, Smith, S.P.
Deposit date:2007-01-26
Release date:2008-01-29
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:The solution structure of the C-terminal modular pair from Clostridium perfringens mu-toxin reveals a noncellulosomal dockerin module
J.Mol.Biol., 381, 2008
2ANL
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X-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite plasmodium malariae bound to an allophenylnorstatine based inhibitor
Descriptor: (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide, plasmepsin IV
Authors:Clemente, J.C, Govindasamy, L, Madabushi, A, Fisher, S.Z, Moose, R.E, Yowell, C.A, Hidaka, K, Kimura, T, Hayashi, Y, Kiso, Y, Agbandje-McKenna, M, Dame, J.B, Dunn, B.M, McKenna, R.
Deposit date:2005-08-11
Release date:2006-04-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the aspartic protease plasmepsin 4 from the malarial parasite Plasmodium malariae bound to an allophenylnorstatine-based inhibitor.
Acta Crystallogr.,Sect.D, 62, 2006
3CWM
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Crystal structure of alpha-1-antitrypsin complexed with citrate
Descriptor: Alpha-1-antitrypsin, CITRIC ACID
Authors:Morton, C.J, Hansen, G, Feil, S.C, Adams, J.J, Parker, M.W.
Deposit date:2008-04-22
Release date:2008-09-23
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Preventing serpin aggregation: The molecular mechanism of citrate action upon antitrypsin unfolding.
Protein Sci., 17, 2008
3BEG
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BU of 3beg by Molmil
Crystal structure of SR protein kinase 1 complexed to its substrate ASF/SF2
Descriptor: ALANINE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PHOSPHOSERINE, ...
Authors:Ngo, J.C, Giang, K, Chakrabarti, S, Ma, C.-T, Huynh, N, Hagopian, J, Dorrestein, P.C, Fu, X.-D, Adams, J.A, Ghosh, G.
Deposit date:2007-11-18
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1
Mol.Cell, 29, 2008
2JH2
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X-ray crystal structure of a cohesin-like module from Clostridium perfringens
Descriptor: O-GLCNACASE NAGJ
Authors:Chitayat, S, Gregg, K, Adams, J.J, Ficko-Blean, E, Bayer, E.A, Boraston, A.B, Smith, S.P.
Deposit date:2007-02-19
Release date:2007-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-Dimensional Structure of a Putative Non- Cellulosomal Cohesin Module from a Clostridium Perfringens Family 84 Glycoside Hydrolase.
J.Mol.Biol., 375, 2008
3CWL
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Crystal structure of alpha-1-antitrypsin, crystal form B
Descriptor: Alpha-1-antitrypsin, CHLORIDE ION
Authors:Morton, C.J, Hansen, G, Feil, S.C, Adams, J.J, Parker, M.W.
Deposit date:2008-04-22
Release date:2008-09-23
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Preventing serpin aggregation: The molecular mechanism of citrate action upon antitrypsin unfolding.
Protein Sci., 17, 2008
2NQL
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Crystal structure of a member of the enolase superfamily from Agrobacterium tumefaciens
Descriptor: GLYCEROL, Isomerase/lactonizing enzyme, SODIUM ION, ...
Authors:Patskovsky, Y, Ramagopal, U, Toro, R, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Gerlt, J, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-10-31
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Enolase from Agrobacterium Tumefaciens C58
To be Published
2O56
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Crystal Structure of a Member of the Enolase Superfamily from Salmonella Typhimurium
Descriptor: MAGNESIUM ION, Putative mandelate racemase
Authors:Patskovsky, Y, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Gerlt, J, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-12-05
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Putative Enolase from Salmonella Typhimurium Lt2
To be Published
2NWI
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Crystal structure of protein AF1396 from Archaeoglobus fulgidus, Pfam DUF98
Descriptor: Hypothetical protein
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Adams, J, Sridhar, V, Wasserman, S, Smith, D, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-11-14
Release date:2006-11-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of hypothetical protein O28875 from Archaeoglobus fulgidus
To be Published
2BV4
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1.0A Structure of Chromobacterium Violaceum Lectin in Complex with alpha-methyl-mannoside
Descriptor: CALCIUM ION, LECTIN CV-IIL, methyl alpha-D-mannopyranoside
Authors:Pokorna, M, Cioci, G, Perret, S, Rebuffet, E, Adam, J, Gilboa-Garber, N, Mitchell, E.P, Imberty, A, Wimmerova, M.
Deposit date:2005-06-22
Release date:2006-05-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Unusual Entropy Driven Affinity of Chromobacterium Violaceum Lectin Cv-Iil Towards Fucose and Mannose
Biochemistry, 45, 2006
2BOI
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1.1A Structure of Chromobacterium Violaceum Lectin CV2L in Complex with alpha-methyl-fucoside
Descriptor: CALCIUM ION, CV-IIL LECTIN, methyl alpha-L-fucopyranoside
Authors:Pokorna, M, Cioci, G, Perret, S, Rebuffet, E, Adam, J, Gilboa-Garber, N, Mitchell, E.P, Imberty, A, Wimmerova, M.
Deposit date:2005-04-12
Release date:2006-05-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Unusual Entropy Driven Affinity of Chromobacter Violaceum Lectin Cv-Iil Towards Fucose and Mannose
Biochemistry, 45, 2006
2O8R
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BU of 2o8r by Molmil
Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis
Descriptor: Polyphosphate kinase, SULFATE ION
Authors:Patskovsky, Y, Toro, R, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-12-12
Release date:2006-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis
To be Published
3C6F
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BU of 3c6f by Molmil
Crystal structure of protein Bsu07140 from Bacillus subtilis
Descriptor: GLYCEROL, YetF protein
Authors:Patskovsky, Y, Min, T, Zhang, A, Adams, J, Groshong, C, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-04
Release date:2008-02-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of protein Bsu07140 from Bacillus subtilis.
To be Published
2JD5
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BU of 2jd5 by Molmil
Sky1p bound to Npl3p-derived substrate peptide
Descriptor: MAGNESIUM ION, NUCLEOLAR PROTEIN 3, SERINE/THREONINE-PROTEIN KINASE SKY1, ...
Authors:Nolen, B, Lukasiewicz, R, Adams, J.A, Huang, D, Ghosh, G.
Deposit date:2007-01-04
Release date:2007-02-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Rgg Domain of Npl3P Recruits Sky1P Through Docking Interactions
J.Mol.Biol., 367, 2007
2NLZ
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Crystal structure of cephalosporin acylase from Bacillus halodurans
Descriptor: Cephalosporin acylase
Authors:Patskovsky, Y, Ramagopal, U, Sauder, J.M, Dickey, M, Adams, J.M, Ozyurt, S, Wasserman, S.R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-10-20
Release date:2006-11-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of cephalosporin acylase from Bacillus halodurans
To be Published
2O34
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Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375
Descriptor: Hypothetical protein, SODIUM ION
Authors:Malashkevich, V.N, Toro, R, Sauder, J.M, Schwinn, K.D, Thompson, D.A, Rutter, M.E, Dickey, M, Groshong, C, Bain, K.T, Adams, J.M, Reyes, C, Rooney, I, Powell, A, Boice, A, Gheyi, T, Ozyurt, S, Atwell, S, Wasserman, S.R, Emtage, S, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-11-30
Release date:2006-12-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of the Hypothetical Protein from Desulfovibrio vulgaris Hildenborough
To be Published
2IQ1
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Crystal structure of human PPM1K
Descriptor: MAGNESIUM ION, Protein phosphatase 2C kappa, PPM1K
Authors:Bonanno, J.B, Freeman, J, Russell, M, Bain, K.T, Adams, J, Pelletier, L, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-10-12
Release date:2006-11-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural genomics of protein phosphatases
J.STRUCT.FUNCT.GENOM., 8, 2007
4ERK
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BU of 4erk by Molmil
THE COMPLEX STRUCTURE OF THE MAP KINASE ERK2/OLOMOUCINE
Descriptor: EXTRACELLULAR REGULATED KINASE 2, OLOMOUCINE, SULFATE ION
Authors:Wang, Z, Canagarajah, B, Boehm, J.C, Cobb, M.H, Young, P.R, Abdel-Meguid, S, Adams, J.L, Goldsmith, E.J.
Deposit date:1998-07-09
Release date:1999-07-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of inhibitor selectivity in MAP kinases.
Structure, 6, 1998
3SK0
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structure of Rhodococcus rhodochrous haloalkane dehalogenase DhaA mutant DhaA12
Descriptor: CHLORIDE ION, Haloalkane dehalogenase
Authors:Lahoda, M, Stsiapanava, A, Mesters, J, Koudelakova, T, Damborsky, J, Kuta-Smatanova, I.
Deposit date:2011-06-22
Release date:2012-06-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Dynamics and hydration explain failed functional transformation in dehalogenase design.
Nat.Chem.Biol., 10, 2014
4N0C
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42F3 TCR pCPE3/H-2Ld complex
Descriptor: 42F3 VmCh alpha, 42F3 VmCh beta, H-2 class I histocompatibility antigen, ...
Authors:Birnbaum, M.E, Adams, J.J, Garcia, K.C.
Deposit date:2013-10-01
Release date:2015-08-19
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.
Nat. Immunol., 17, 2016

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