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PDB: 1609 results

7T5G
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Structure of rabies virus phosphoprotein C-terminal domain, S210E mutant
Descriptor: Phosphoprotein, SULFATE ION
Authors:Zhan, J, Metcalfe, R.D, Gooley, P.R, Griffin, M.D.W.
Deposit date:2021-12-12
Release date:2022-04-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Basis of Functional Effects of Phosphorylation of the C-Terminal Domain of the Rabies Virus P Protein.
J.Virol., 96, 2022
9B3T
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BU of 9b3t by Molmil
Octameric prenyltransferase domain of linkerless Fusicoccadiene synthase with C2 symmetry without associated cyclase domains
Descriptor: Fusicoccadiene synthase
Authors:Wenger, E.S, Schultz, K, Marmorstein, R, Christianson, D.W.
Deposit date:2024-03-20
Release date:2024-09-25
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Engineering substrate channeling in a bifunctional terpene synthase.
Proc.Natl.Acad.Sci.USA, 121, 2024
9CBK
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Crystal Structure of Danio rerio Histone Deacetylase 6 in Complex with p-Aminomethyl Phenylthioketone
Descriptor: 1,2-ETHANEDIOL, 1-[4-(aminomethyl)phenyl]-2-sulfanylethan-1-one, Hdac6 protein, ...
Authors:Goulart Stollmaier, J, Watson, P.R, Christianson, D.W.
Deposit date:2024-06-19
Release date:2024-09-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10.
Acs Med.Chem.Lett., 15, 2024
9CBH
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminomethyl Phenylthioketone
Descriptor: 1-[4-(aminomethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Goulart Stollmaier, J, Christianson, D.W.
Deposit date:2024-06-19
Release date:2024-09-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10.
Acs Med.Chem.Lett., 15, 2024
7T5H
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Structure of rabies virus phosphoprotein C-terminal domain, wild type
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, Phosphoprotein, ...
Authors:Zhan, J, Metcalfe, R.D, Gooley, P.R, Griffin, M.D.W.
Deposit date:2021-12-12
Release date:2022-04-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular Basis of Functional Effects of Phosphorylation of the C-Terminal Domain of the Rabies Virus P Protein.
J.Virol., 96, 2022
9CBJ
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BU of 9cbj by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with p-Aminopropyl Phenylthioketone
Descriptor: 1,2-ETHANEDIOL, 1-[4-(3-aminopropyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
Authors:Goulart Stollmaier, J, Christianson, D.W.
Deposit date:2024-06-19
Release date:2024-09-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10.
Acs Med.Chem.Lett., 15, 2024
9CBG
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Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with m-Aminoethyl Phenylthioketone
Descriptor: 1,2-ETHANEDIOL, 1-[3-(2-aminoethyl)phenyl]-2-sulfanylethan-1-one, PHOSPHATE ION, ...
Authors:Goulart Stollmaier, J, Christianson, D.W.
Deposit date:2024-06-19
Release date:2024-09-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Design, Synthesis, and Structural Evaluation of Acetylated Phenylthioketone Inhibitors of HDAC10.
Acs Med.Chem.Lett., 15, 2024
9BUL
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BU of 9bul by Molmil
The structure of NiaR from Thermotoga maritima bound to nicotinic acid
Descriptor: FE (II) ION, NICOTINIC ACID, PROLINE, ...
Authors:Glasfeld, A, Cheng, D.W.C, Li, Y.
Deposit date:2024-05-17
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of NiaR from Thermotoga maritima bound to nicotinic acid
To Be Published
9BQV
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DdmD dimer apoprotein
Descriptor: Helicase/UvrB N-terminal domain-containing protein
Authors:Bravo, J.P.K, Taylor, D.W.
Deposit date:2024-05-10
Release date:2024-07-03
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Plasmid targeting and destruction by the DdmDE bacterial defence system.
Nature, 630, 2024
9CA2
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BU of 9ca2 by Molmil
ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
Descriptor: CARBONIC ANHYDRASE II, MERCURY (II) ION, ZINC ION
Authors:Alexander, R.S, Christianson, D.W.
Deposit date:1991-07-09
Release date:1992-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Engineering the hydrophobic pocket of carbonic anhydrase II.
Biochemistry, 30, 1991
6WYO
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BU of 6wyo by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) H82F F202Y double mutant complexed with Trichostatin A
Descriptor: Histone deacetylase 6, POTASSIUM ION, TRICHOSTATIN A, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2020-05-13
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.30000281 Å)
Cite:Binding of inhibitors to active-site mutants of CD1, the enigmatic catalytic domain of histone deacetylase 6.
Acta Crystallogr.,Sect.F, 76, 2020
7SQ1
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BG505.MD39TS Env trimer in complex with Fab from antibody C05
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, C05 Fab Light chain, ...
Authors:Moore, A, Du, J, Xu, Z, Walker, S, Kulp, D.W, Pallesen, J.
Deposit date:2021-11-04
Release date:2022-06-22
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Induction of tier-2 neutralizing antibodies in mice with a DNA-encoded HIV envelope native like trimer.
Nat Commun, 13, 2022
3OOC
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BU of 3ooc by Molmil
Crystal structure of the membrane fusion protein CusB from Escherichia coli
Descriptor: Cation efflux system protein cusB
Authors:Su, C.-C, Yang, F, Long, F, Reyon, D, Routh, M.D, Kuo, D.W, Mokhtari, A.K, Van Ornam, J.D, Rabe, K.L, Hoy, J.A, Lee, Y.J, Rajashankar, K.R, Yu, E.W.
Deposit date:2010-08-30
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Crystal structure of the membrane fusion protein CusB from Escherichia coli.
J.Mol.Biol., 393, 2009
6WSJ
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BU of 6wsj by Molmil
Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1
Descriptor: 1,2-ETHANEDIOL, Hdac6 protein, POTASSIUM ION, ...
Authors:Watson, P.R, Christianson, D.W.
Deposit date:2020-05-01
Release date:2021-04-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
5GZ0
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BU of 5gz0 by Molmil
Crystal structure of FM329, a recombinant Fab adopted from cetuximab
Descriptor: FM329 heavy chain, FM329 light chain
Authors:Sim, D.W, Kim, J.H, Kim, Y.P, Won, H.S.
Deposit date:2016-09-26
Release date:2017-10-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of FM329, a recombinant Fab adopted from cetuximab
To Be Published
3P7O
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BU of 3p7o by Molmil
Rat Insulin Degrading Enzyme (Insulysin) E111F mutant with two bound peptides
Descriptor: Insulin-degrading enzyme, active site bound peptide, distal site bound peptide
Authors:Rodgers, D.W, Noinaj, N.
Deposit date:2010-10-12
Release date:2011-07-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1423 Å)
Cite:Identification of the allosteric regulatory site of insulysin.
Plos One, 6, 2011
3ONM
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BU of 3onm by Molmil
Effector binding Domain of LysR-Type transcription factor RovM from Y. pseudotuberculosis
Descriptor: Transcriptional regulator LrhA
Authors:Quade, N, Diekmann, M, Haffke, M, Heroven, A.K, Dersch, P, Heinz, D.W.
Deposit date:2010-08-30
Release date:2011-01-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the effector-binding domain of the LysR-type transcription factor RovM from Yersinia pseudotuberculosis.
Acta Crystallogr.,Sect.D, 67, 2011
5H1W
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BU of 5h1w by Molmil
Crystal Structure of Hyperthermophilic Thermotoga maritima L-Ketose-3-Epimerase with Mn2+ and L(+)-Erythrulose
Descriptor: L-Erythrulose, MANGANESE (II) ION, PENTAETHYLENE GLYCOL, ...
Authors:Cao, T.P, Shin, S.M, Lee, D.W, Lee, S.H.
Deposit date:2016-10-12
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:TM0416, a Hyperthermophilic Promiscuous Nonphosphorylated Sugar Isomerase, Catalyzes Various C5and C6Epimerization Reactions
Appl. Environ. Microbiol., 83, 2017
6XB0
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BU of 6xb0 by Molmil
Room temperature X-ray crystallography reveals catalytic cysteine in the SARS-CoV-2 3CL Mpro is highly reactive: Insights for enzyme mechanism and drug design
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Kneller, D.W, Kovalevsky, A, Coates, L.
Deposit date:2020-06-05
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Room-temperature X-ray crystallography reveals the oxidation and reactivity of cysteine residues in SARS-CoV-2 3CL M pro : insights into enzyme mechanism and drug design.
Iucrj, 7, 2020
6XQT
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Room-temperature X-ray Crystal structure of SARS-CoV-2 main protease in complex with Narlaprevir
Descriptor: (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
Authors:Kneller, D.W, Kovalevsky, A, Coates, L.
Deposit date:2020-07-10
Release date:2020-07-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Malleability of the SARS-CoV-2 3CL M pro Active-Site Cavity Facilitates Binding of Clinical Antivirals.
Structure, 28, 2020
3OM6
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BU of 3om6 by Molmil
Crystal structure of B. megaterium levansucrase mutant Y247A
Descriptor: CALCIUM ION, Levansucrase, SULFATE ION, ...
Authors:Strube, C.P, Homann, A, Gamer, M, Jahn, D, Seibel, J, Heinz, D.W.
Deposit date:2010-08-26
Release date:2011-03-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Polysaccharide Synthesis of the Levansucrase SacB from Bacillus megaterium Is Controlled by Distinct Surface Motifs.
J.Biol.Chem., 286, 2011
3OM7
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BU of 3om7 by Molmil
Crystal structure of B. megaterium levansucrase mutant Y247W
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Levansucrase, ...
Authors:Strube, C.P, Homann, A, Gamer, M, Jahn, D, Seibel, J, Heinz, D.W.
Deposit date:2010-08-26
Release date:2011-03-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Polysaccharide Synthesis of the Levansucrase SacB from Bacillus megaterium Is Controlled by Distinct Surface Motifs.
J.Biol.Chem., 286, 2011
7TEH
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BU of 7teh by Molmil
Room temperature X-ray structure of SARS-CoV-2 main protease (3CL Mpro) in complex with BBH-2
Descriptor: (1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
Authors:Kovalevsky, A, Kneller, D.W, Coates, L.
Deposit date:2022-01-05
Release date:2022-03-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Covalent narlaprevir- and boceprevir-derived hybrid inhibitors of SARS-CoV-2 main protease
Nat Commun, 13, 2022
7TFR
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BU of 7tfr by Molmil
Room temperature X-ray structure of SARS-CoV-2 main protease (3CL Mpro) in complex with NBH-2
Descriptor: (1R,2S,5S)-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-({1-[(2-methylpropane-2-sulfonyl)methyl]cyclohexyl}carbamoyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase
Authors:Kovalevsky, A, Kneller, D.W, Coates, L.
Deposit date:2022-01-07
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Covalent narlaprevir- and boceprevir-derived hybrid inhibitors of SARS-CoV-2 main protease
Nat Commun, 13, 2022
7TDU
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Joint X-ray/neutron structure of SARS-CoV-2 main protease (3CL Mpro) in complex with BBH-1
Descriptor: (1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxo(1-~2~H)pyrrolidin-3-yl]propan-2-yl}-3-{N-[tert-butyl(~2~H)carbamoyl]-3-methyl-L-(N-~2~H)valyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-(~2~H)carboxamide, 3C-like proteinase
Authors:Kovalevsky, A, Kneller, D.W, Coates, L.
Deposit date:2022-01-03
Release date:2022-03-02
Last modified:2024-10-23
Method:NEUTRON DIFFRACTION (1.85 Å), X-RAY DIFFRACTION
Cite:Covalent narlaprevir- and boceprevir-derived hybrid inhibitors of SARS-CoV-2 main protease
Nat Commun, 13, 2022

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