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PDB: 1951 results

5V3R
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BU of 5v3r by Molmil
CHMP4C in complex with ALIX BRO1
Descriptor: Charged multivesicular body protein 4c, Programmed cell death 6-interacting protein
Authors:Wenzel, D.M, Alam, S.L, Sundquist, W.I.
Deposit date:2017-03-08
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.906 Å)
Cite:A cancer-associated polymorphism in ESCRT-III disrupts the abscission checkpoint and promotes genome instability.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VCL
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BU of 5vcl by Molmil
Structure of the Qdm peptide bound to Qa-1a
Descriptor: Beta-2-microglobulin, GLYCEROL, H2-T23 protein, ...
Authors:Ying, G, Zajonc, D.M.
Deposit date:2017-03-31
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of Qa-1a with bound Qa-1 determinant modifier peptide.
PLoS ONE, 12, 2017
5VH8
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BU of 5vh8 by Molmil
Structure and dynamics of RNA repeat expansions that cause Huntington's Disease and myotonic dystrophy type 1
Descriptor: RNA (5'-R(*GP*AP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*C)-3')
Authors:Chen, J.L, VanEtten, D.M, Fountain, M.A, Yildirim, I, Disney, M.D.
Deposit date:2017-04-12
Release date:2017-06-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and Dynamics of RNA Repeat Expansions That Cause Huntington's Disease and Myotonic Dystrophy Type 1.
Biochemistry, 56, 2017
5VH7
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BU of 5vh7 by Molmil
Structure and dynamics of RNA repeat expansions that cause Huntington's Disease and myotonic dystrophy type 1
Descriptor: RNA (5'-R(*GP*AP*CP*CP*AP*GP*CP*AP*G)-3')
Authors:Chen, J.L, VanEtten, D.M, Fountain, M.A, Yildirim, I, Disney, M.D.
Deposit date:2017-04-12
Release date:2017-06-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and Dynamics of RNA Repeat Expansions That Cause Huntington's Disease and Myotonic Dystrophy Type 1.
Biochemistry, 56, 2017
5VKH
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BU of 5vkh by Molmil
Closed conformation of KcsA Y82A-F103A mutant
Descriptor: (1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE, Antibody Heavy Chain, Antibody Light Chain, ...
Authors:Cuello, L.G, Perozo, E, Cortes, D.M.
Deposit date:2017-04-21
Release date:2017-12-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The gating cycle of a K+ channel at atomic resolution.
Elife, 6, 2017
5TW5
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BU of 5tw5 by Molmil
Structure of mouse CD1d with bound glycosphingolipid JJ112
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Zajonc, D.M, Wang, J.
Deposit date:2016-11-11
Release date:2017-09-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Sci Rep, 7, 2017
5VKE
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BU of 5vke by Molmil
Open conformation of KcsA deep-inactivated
Descriptor: (1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE, Antibody Heavy Chain, Antibody Light Chain, ...
Authors:Cuello, L.G, Perozo, E, Cortes, D.M.
Deposit date:2017-04-21
Release date:2017-12-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:The gating cycle of a K+ channel at atomic resolution.
Elife, 6, 2017
5USL
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BU of 5usl by Molmil
Structure of vaccinia virus D8 protein bound to human Fab vv304
Descriptor: Fab vv304 Heavy chain, Fab vv304 Light chain, IMV membrane protein
Authors:Zajonc, D.M.
Deposit date:2017-02-13
Release date:2017-09-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-function characterization of three human antibodies targeting the vaccinia virus adhesion molecule D8.
J. Biol. Chem., 293, 2018
5V8T
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BU of 5v8t by Molmil
Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354
Descriptor: 2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, FORMIC ACID, MAGNESIUM ION, ...
Authors:Lorimer, D.D, Dranow, D.M, Seufert, F, Abendroth, J, Holzgrabe, U.
Deposit date:2017-03-22
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354
to be published
5W1E
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BU of 5w1e by Molmil
PobR in complex with PHB
Descriptor: GLYCEROL, P-HYDROXYBENZOIC ACID, Putative transcriptional regulator, ...
Authors:Page, R, Peti, W, Lord, D.M, Bajaj, R, Zhang, R.
Deposit date:2017-06-02
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:A peculiar IclR family transcription factor regulates para-hydroxybenzoate catabolism in Streptomyces coelicolor.
Nucleic Acids Res., 46, 2018
5W4Y
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BU of 5w4y by Molmil
Crystal Structure of Riboflavin Lyase (RcaE) with cofactor FMN
Descriptor: FLAVIN MONONUCLEOTIDE, Riboflavin Lyase
Authors:Bhandari, D.M, Chakrabarty, Y, Zhao, B, Wood, J, Li, P, Begley, T.P.
Deposit date:2017-06-13
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cannibalism Among the Flavins: a Novel C-N Bond Cleavage in Riboflavin Catabolism Mediated by Flavin-Generated Superoxide Radical
To be Published
5TQJ
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BU of 5tqj by Molmil
Crystal structure of response regulator receiver protein from Burkholderia phymatum
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Response regulator receiver protein
Authors:Edwards, T.E, Dranow, D.M, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-10-24
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of response regulator receiver protein from Burkholderia phymatum
To Be Published
5TW2
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BU of 5tw2 by Molmil
Structure of mouse CD1d with bound alpha-galactosylsphingamide JG168
Descriptor: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zajonc, D.M, Wang, J.
Deposit date:2016-11-11
Release date:2017-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Sci Rep, 7, 2017
5TVI
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BU of 5tvi by Molmil
Crystal structure of non-specific lipid transfer protein reveals non-canonical lipid binding: possible relevance in modulating allergenicity
Descriptor: GLYCEROL, MYRISTIC ACID, non specific lipid transfer protein, ...
Authors:Jain, A, Salunke, D.M.
Deposit date:2016-11-09
Release date:2017-07-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of nonspecific lipid transfer protein from Solanum melongena
Proteins, 85, 2017
5W4Z
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BU of 5w4z by Molmil
Crystal Structure of Riboflavin Lyase (RcaE) with modified FMN and substrate Riboflavin
Descriptor: 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol, RIBOFLAVIN, Riboflavin Lyase
Authors:Bhandari, D.M, Chakrabarty, Y, Zhao, B, Wood, J, Li, P, Begley, T.P.
Deposit date:2017-06-13
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Cannibalism Among the Flavins: a Novel C-N Bond Cleavage in Riboflavin Catabolism Mediated by Flavin-Generated Superoxide Radical
To be Published
5W48
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BU of 5w48 by Molmil
Crystal Structure of Riboflavin Lyase (RcaE)
Descriptor: Riboflavin Lyase, SULFATE ION
Authors:Bhandari, D.M, Chakrabarty, Y, Zhao, B, Wood, J, Li, P, Begley, T.P.
Deposit date:2017-06-09
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cannibalism Among the Flavins: a Novel C-N Bond Cleavage in Riboflavin Catabolism Mediated by Flavin-Generated Superoxide Radical
To be Published
5VCJ
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BU of 5vcj by Molmil
Structure of alpha-galactosylphytosphingosine bound by CD1d and in complex with the Va14Vb8.2 TCR
Descriptor: (2S,3S,4R)-2-amino-3,4-dihydroxyoctadecyl alpha-D-galactopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Wang, J, Zajonc, D.M.
Deposit date:2017-03-31
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Enhancing T cell responses and tumour immunity by vaccination with peptides conjugated to a weak NKT cell agonist.
Org. Biomol. Chem., 17, 2019
5VJ2
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BU of 5vj2 by Molmil
Structure of human respiratory syncytial virus non-structural protein 1 (NS1)
Descriptor: 1,4-DIETHYLENE DIOXIDE, CHLORIDE ION, GLYCEROL, ...
Authors:Leung, D.W, Borek, D.M, Amarasinghe, G.K.
Deposit date:2017-04-18
Release date:2017-07-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses.
Nat Microbiol, 2, 2017
5WHZ
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BU of 5whz by Molmil
PGDM1400-10E8v4 CODV Fab
Descriptor: Anti-HIV CODV-Fab Heavy chain, Anti-HIV CODV-Fab Light chain
Authors:Lord, D.M, Wei, R.R.
Deposit date:2017-07-18
Release date:2017-10-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.549 Å)
Cite:Trispecific broadly neutralizing HIV antibodies mediate potent SHIV protection in macaques.
Science, 358, 2017
4EBQ
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BU of 4ebq by Molmil
Fab structure of anti-Vaccinia virus D8L antigen mouse IgG2a LA5
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Matho, M.H, Zajonc, D.M.
Deposit date:2012-03-23
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5.
J.Virol., 86, 2012
4ELK
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BU of 4elk by Molmil
Crystal structure of the Hy19.3 type II NKT TCR
Descriptor: ACETATE ION, FORMIC ACID, Hy19.3 TCR alpha chain (mouse variable domain, ...
Authors:Girardi, E, Maricic, I, Wang, J, Mac, T.T, Iyer, P, Kumar, V, Zajonc, D.M.
Deposit date:2012-04-10
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Type II natural killer T cells use features of both innate-like and conventional T cells to recognize sulfatide self antigens.
Nat.Immunol., 13, 2012
4EQF
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BU of 4eqf by Molmil
Trip8b-1a#206-567 interacting with the carboxy-terminal seven residues of HCN2
Descriptor: PEX5-related protein, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Authors:Bankston, J.R, Camp, S.S, Dimaio, F, Lewis, A.S, Chetkovich, D.M, Zagotta, W.N.
Deposit date:2012-04-18
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and stoichiometry of an accessory subunit TRIP8b interaction with hyperpolarization-activated cyclic nucleotide-gated channels.
Proc.Natl.Acad.Sci.USA, 109, 2012
4F7C
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BU of 4f7c by Molmil
Crystal structure of bovine CD1d with bound C12-di-sulfatide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, CD1D antigen, ...
Authors:Wang, J, Zajonc, D.M.
Deposit date:2012-05-15
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.864 Å)
Cite:Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids.
Plos One, 7, 2012
4FA2
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BU of 4fa2 by Molmil
Human P38 alpha Mitogen-Activated Kinase In Complex With SB239063
Descriptor: 1,2-ETHANEDIOL, 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE, BETA-MERCAPTOETHANOL, ...
Authors:Grum-Tokars, V.L, Minasov, G, Anderson, W.F, Watterson, D.M.
Deposit date:2012-05-21
Release date:2013-06-05
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of Novel In Vivo Chemical Probes to Address CNS Protein Kinase Involvement in Synaptic Dysfunction.
Plos One, 8, 2013
4F7E
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BU of 4f7e by Molmil
Crystal structure of bovine CD1d with bound C16:0-alpha-galactosyl ceramide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, ...
Authors:Wang, J, Zajonc, D.M.
Deposit date:2012-05-15
Release date:2012-11-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Bovine CD1d Reveal Altered αGalCer Presentation and a Restricted A' Pocket Unable to Bind Long-Chain Glycolipids.
Plos One, 7, 2012

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