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PDB: 1939 results

5CAD
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BU of 5cad by Molmil
Crystal structure of the vicilin from Solanum melongena revealed existence of different anionic ligands in structurally similar pockets
Descriptor: ACETATE ION, MAGNESIUM ION, PYROGLUTAMIC ACID, ...
Authors:Jain, A, Kumar, A, Salunke, D.M.
Deposit date:2015-06-29
Release date:2016-04-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets
Sci Rep, 6, 2016
5HM9
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BU of 5hm9 by Molmil
Crystal structure of MamO protease domain from Magnetospirillum magneticum (apo form)
Descriptor: MamO protease domain, poly(UNK)
Authors:Hershey, D.M, Ren, X, Hurley, J.H, Komeili, A.
Deposit date:2016-01-15
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria.
Plos Biol., 14, 2016
5HMA
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BU of 5hma by Molmil
Crystal structure of MamO protease domain from Magnetospirillum magneticum (Ni bound form)
Descriptor: CHLORIDE ION, NICKEL (II) ION, Trypsin-like serine protease, ...
Authors:Hershey, D.M, Ren, X, Hurley, J.H, Komeili, A.
Deposit date:2016-01-15
Release date:2016-02-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria.
Plos Biol., 14, 2016
5HI2
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BU of 5hi2 by Molmil
BRAF Kinase domain b3aC loop deletion mutant in complex with sorafenib
Descriptor: 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE, Serine/threonine-protein kinase B-raf
Authors:Whalen, D.M, Foster, S.A, Ozen, A, Wongchenko, M, Yin, J, Schaefer, G, Mayfield, J, Chmielecki, J, Stephens, P, Albacker, L, Yan, Y, Song, K, Hatzivassiliou, G, Eigenbrot, C, Yu, C, Shaw, A.S, Manning, G, Skelton, N.J, Hymowitz, S.G, Malek, S.
Deposit date:2016-01-11
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.512 Å)
Cite:Activation Mechanism of Oncogenic Deletion Mutations in BRAF, EGFR, and HER2.
Cancer Cell, 29, 2016
5MVA
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BU of 5mva by Molmil
Structure of the thin filament at high calcium concentration
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle
Authors:Paul, D.M, Squire, J.M, Morris, E.P.
Deposit date:2017-01-16
Release date:2017-11-29
Method:ELECTRON MICROSCOPY (27.700001 Å)
Cite:Relaxed and active thin filament structures; a new structural basis for the regulatory mechanism.
J. Struct. Biol., 197, 2017
5MP7
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BU of 5mp7 by Molmil
Crystal structure of phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis
Descriptor: ACETATE ION, Ribose-phosphate pyrophosphokinase
Authors:Donini, S, Garavaglia, S, Ferraris, D.M, Miggiano, R, Mori, S, Shibayama, K, Rizzi, M.
Deposit date:2016-12-16
Release date:2017-04-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Biochemical and structural investigations on phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis.
PLoS ONE, 12, 2017
4ZJ8
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BU of 4zj8 by Molmil
Structures of the human OX1 orexin receptor bound to selective and dual antagonists
Descriptor: OLEIC ACID, [(7R)-4-(5-chloro-1,3-benzoxazol-2-yl)-7-methyl-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone, human OX1R fusion protein to P.abysii glycogen synthase
Authors:Yin, J, Brautigam, C.A, Shao, Z, Clark, L, Harrell, C.M, Gotter, A.L, Coleman, P, Renger, J.J, Rosenbaum, D.M.
Deposit date:2015-04-29
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Structure and ligand-binding mechanism of the human OX1 and OX2 orexin receptors.
Nat.Struct.Mol.Biol., 23, 2016
5LQF
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BU of 5lqf by Molmil
CDK1/CyclinB1/CKS2 in complex with NU6102
Descriptor: Cyclin-dependent kinase 1, Cyclin-dependent kinases regulatory subunit 2, G2/mitotic-specific cyclin-B1, ...
Authors:Coxon, C.R, Anscombe, E, Harnor, S.J, Martin, M.P, Carbain, B.J, Hardcastle, I.R, Harlow, L.K, Korolchuk, S, Matheson, C.J, Noble, M.E, Newell, D.R, Turner, D.M, Sivaprakasam, M, Wang, L.Z, Wong, C, Golding, B.T, Griffin, R.J, Endicott, J.A, Cano, C.
Deposit date:2016-08-17
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Cyclin-Dependent Kinase (CDK) Inhibitors: Structure-Activity Relationships and Insights into the CDK-2 Selectivity of 6-Substituted 2-Arylaminopurines.
J. Med. Chem., 60, 2017
5JLT
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BU of 5jlt by Molmil
The crystal structure of the bacteriophage T4 MotA C-terminal domain in complex with dsDNA reveals a novel protein-DNA recognition motif
Descriptor: DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*TP*GP*CP*TP*TP*AP*AP*TP*AP*AP*TP*CP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*GP*AP*TP*TP*AP*TP*TP*AP*AP*GP*CP*AP*AP*AP*GP*CP*TP*TP*C)-3'), Middle transcription regulatory protein motA
Authors:Cuypers, M.G, Robertson, R.M, Knipling, L, Hinton, D.M, White, S.W.
Deposit date:2016-04-27
Release date:2017-05-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:The phage T4 MotA transcription factor contains a novel DNA binding motif that specifically recognizes modified DNA.
Nucleic Acids Res., 46, 2018
5M0T
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BU of 5m0t by Molmil
Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH
Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH, FE (II) ION, ...
Authors:Jakubczyk, D, Caputi, L, Stevenson, C.E.M, Lawson, D.M, O'Connor, S.E.
Deposit date:2016-10-05
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of EasH (Aspergillus japonicus) - an oxidase involved in cycloclavine biosynthesis.
Chem. Commun. (Camb.), 52, 2016
6G57
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BU of 6g57 by Molmil
Structure of the H1 domain of human KCTD8
Descriptor: BTB/POZ domain-containing protein KCTD8
Authors:Pinkas, D.M, Bufton, J.C, Strain-Damerell, C.M, Fairhead, M, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
Deposit date:2018-03-29
Release date:2019-03-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the H1 domain of human KCTD8
To Be Published
5B0V
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BU of 5b0v by Molmil
Crystal Structure of Marburg virus VP40 Dimer
Descriptor: ETHANOL, Matrix protein VP40
Authors:Oda, S, Bornholdt, Z.A, Abelson, D.M, Saphire, E.O.
Deposit date:2015-11-05
Release date:2016-01-20
Last modified:2016-03-09
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal Structure of Marburg Virus VP40 Reveals a Broad, Basic Patch for Matrix Assembly and a Requirement of the N-Terminal Domain for Immunosuppression
J.Virol., 90, 2015
5IXA
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BU of 5ixa by Molmil
HCMV DNA polymerase processivity subunit UL44 at neutral pH and low salt
Descriptor: DNA polymerase processivity factor
Authors:Chen, H, Coen, D.M, Hogle, J.M, Filman, D.J.
Deposit date:2016-03-23
Release date:2016-11-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.684 Å)
Cite:A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions.
ACS Infect Dis, 3, 2017
5JTH
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BU of 5jth by Molmil
Crystal structure of E67A calmodulin - CaM:RM20 analog complex
Descriptor: CALCIUM ION, Calmodulin, Myosin light chain kinase, ...
Authors:Grum-Tokars, V.L, Minasov, G, Anderson, W.F, Watterson, D.M.
Deposit date:2016-05-09
Release date:2017-07-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of E67A calmodulin - CaM:RM20 analog complex
To Be Published
5JQA
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BU of 5jqa by Molmil
CaM:RM20 complex
Descriptor: CALCIUM ION, Calmodulin, Myosin light chain kinase, ...
Authors:Tokars, V.L, Minasov, G, Anderson, W.F, Watterson, D.M.
Deposit date:2016-05-04
Release date:2017-10-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:CaM:RM20 complex
To be Published
6F9J
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BU of 6f9j by Molmil
Crystal structure of Barley Beta-Amylase complexed with 4-O-alpha-D-mannopyranosyl-(1-deoxynojirimycin)
Descriptor: 1-DEOXYNOJIRIMYCIN, Beta-amylase, CHLORIDE ION, ...
Authors:Moncayo, M.A, Rodrigues, L.L, Stevenson, C.E.M, Ruzanski, C, Rejzek, M, Lawson, D.M, Angulo, J, Field, R.A.
Deposit date:2017-12-14
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Synthesis, biological and structural analysis of prospective glycosyl-iminosugar prodrugs: impact on germination
To be published
5K86
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BU of 5k86 by Molmil
Aza-glycine containing collagen peptide
Descriptor: Aza-glycine containing collagen peptide, SULFATE ION
Authors:Chenoweth, D.M, Kasznel, A.J, Hai, Y.
Deposit date:2016-05-27
Release date:2017-06-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.127 Å)
Cite:Structural Basis for Aza-Glycine Stabilization of Collagen.
J. Am. Chem. Soc., 139, 2017
6GGY
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BU of 6ggy by Molmil
Paenibacillus sp. YM1 laminaribiose phosphorylase with sulphate bound
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Laminaribiose phosphorylase, ...
Authors:Kuhaudomlarp, S, Walpole, S, Stevenson, C.E.M, Nepogodiev, S.A, Lawson, D.M, Angulo, J, Field, R.A.
Deposit date:2018-05-04
Release date:2018-06-13
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Unravelling the Specificity of Laminaribiose Phosphorylase from Paenibacillus sp. YM-1 towards Donor Substrates Glucose/Mannose 1-Phosphate by Using X-ray Crystallography and Saturation Transfer Difference NMR Spectroscopy.
Chembiochem, 20, 2019
4ZTH
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BU of 4zth by Molmil
Structure of human p38aMAPK-arylpyridazinylpyridine fragment complex used in inhibitor discovery
Descriptor: 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE, 6-chloro-3-phenyl-4-(pyridin-4-yl)pyridazine, BETA-MERCAPTOETHANOL, ...
Authors:Grum-Tokars, V.L, Roy, S.M, Watterson, D.M.
Deposit date:2015-05-14
Release date:2016-06-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A Selective and Brain Penetrant p38 alpha MAPK Inhibitor Candidate for Neurologic and Neuropsychiatric Disorders That Attenuates Neuroinflammation and Cognitive Dysfunction.
J.Med.Chem., 62, 2019
4ZTA
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BU of 4zta by Molmil
Ebola virus nucleoprotein bound to VP35 chaperoning peptide I212121
Descriptor: Polymerase cofactor VP35,Nucleoprotein
Authors:Kirchdoerfer, R.N, Abelson, D.M, Saphire, E.O.
Deposit date:2015-05-14
Release date:2015-05-27
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ebola virus nucleoprotein bound to VP35 chaperoning peptide I212121
to be published
5KP9
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BU of 5kp9 by Molmil
Structure of Nanoparticle Released from Enveloped Protein Nanoparticle
Descriptor: EPN-01*
Authors:Votteler, J, Ogohara, C, Yi, S, Hsia, Y, Natterman, U, Belnap, D.M, King, N.P, Sundquist, W.I.
Deposit date:2016-07-02
Release date:2016-12-07
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Designed proteins induce the formation of nanocage-containing extracellular vesicles.
Nature, 540, 2016
5MVY
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BU of 5mvy by Molmil
Thin Filament at low calcium concentration
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle
Authors:Paul, D.M, Squire, J.M, Morris, E.P.
Deposit date:2017-01-17
Release date:2018-02-14
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (28.4 Å)
Cite:Relaxed and active thin filament structures; a new structural basis for the regulatory mechanism.
J. Struct. Biol., 197, 2017
5CPS
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BU of 5cps by Molmil
Disproportionating enzyme 1 from Arabidopsis - maltotriose soak
Descriptor: 1,2-ETHANEDIOL, 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic, ...
Authors:O'Neill, E.C, Stevenson, C.E.M, Tantanarat, K, Latousakis, D, Donaldson, M.I, Rejzek, M, Limpaseni, T, Smith, A.M, Field, R.A, Lawson, D.M.
Deposit date:2015-07-21
Release date:2015-11-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1).
J.Biol.Chem., 290, 2015
6ES0
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BU of 6es0 by Molmil
Crystal structure of the kinase domain of human RIPK2 in complex with the activation loop targeting inhibitor CS-R35
Descriptor: 2-[2-fluoranyl-4-[[2-fluoranyl-4-[2-(methylcarbamoyl)pyridin-4-yl]oxy-phenyl]carbamoylamino]phenyl]sulfanylethanoic acid, Receptor-interacting serine/threonine-protein kinase 2
Authors:Pinkas, D.M, Bufton, J.C, Suebsuwong, C, Ray, S.S, Dai, B, Newman, J.A, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Degterev, A, Cuny, G.D, Bullock, A.N.
Deposit date:2017-10-19
Release date:2018-02-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Activation loop targeting strategy for design of receptor-interacting protein kinase 2 (RIPK2) inhibitors.
Bioorg. Med. Chem. Lett., 28, 2018
5CPQ
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BU of 5cpq by Molmil
Disproportionating enzyme 1 from Arabidopsis - apo form
Descriptor: 1,2-ETHANEDIOL, 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic
Authors:O'Neill, E.C, Stevenson, C.E.M, Tantanarat, K, Latousakis, D, Donaldson, M.I, Rejzek, M, Limpaseni, T, Smith, A.M, Field, R.A, Lawson, D.M.
Deposit date:2015-07-21
Release date:2015-11-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1).
J.Biol.Chem., 290, 2015

224004

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