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PDB: 2004 results

4CAU
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BU of 4cau by Molmil
THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH 2 HMAB 14C10 FAB
Descriptor: ENVELOPE PROTEIN E, FAB 14C10
Authors:Teoh, E.P, Kukkaro, P, Teo, E.W, Lim, A.P, Tan, T.T, Yip, A, Schul, W, Aung, M, Kostyuchenko, V.A, Leo, Y.S, Chan, S.H, Smith, K.G, Chan, A.H, Zou, G, Ooi, E.E, Kemeny, D.M, Tan, G.K, Ng, J.K, Ng, M.L, Alonso, S, Fisher, D, Shi, P.Y, Hanson, B.J, Lok, S.M, Macary, P.A.
Deposit date:2013-10-09
Release date:2013-10-16
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7 Å)
Cite:The Structural Basis for Serotype-Specific Neutralization of Dengue Virus by a Human Antibody.
Sci.Trans.Med, 4, 2012
4TVO
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BU of 4tvo by Molmil
Structure of Malate Dehydrogenase from Mycobacterium tuberculosis
Descriptor: Malate dehydrogenase, SODIUM ION, SULFATE ION
Authors:Ferraris, D.M, Rizzi, M.
Deposit date:2014-06-27
Release date:2015-01-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of citrate synthase and malate dehydrogenase of Mycobacterium tuberculosis.
Proteins, 83, 2015
4C4M
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BU of 4c4m by Molmil
Crystal structure of the Sonic Hedgehog-chondroitin-4-sulphate complex
Descriptor: ACETATE ION, CALCIUM ION, SONIC HEDGEHOG PROTEIN, ...
Authors:Whalen, D.M, Malinauskas, T, Gilbert, R.J.C, Siebold, C.
Deposit date:2013-09-05
Release date:2013-10-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural Insights Into Proteoglycan-Shaped Hedgehog Signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
4CN4
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BU of 4cn4 by Molmil
GlgE isoform 1 from Streptomyces coelicolor E423A mutant with 2-deoxy- 2-fluoro-beta-maltosyl modification
Descriptor: ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE MALTOSYLTRANSFERASE 1, alpha-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-beta-D-glucopyranose
Authors:Syson, K, Stevenson, C.E.M, Rashid, A.M, Saalbach, G, Tang, M, Tuukanen, A, Svergun, D.I, Withers, S.G, Lawson, D.M, Bornemann, S.
Deposit date:2014-01-21
Release date:2014-05-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insight Into How Streptomyces Coelicolor Maltosyl Transferase Glge Binds Alpha-Maltose 1-Phosphate and Forms a Maltosyl-Enzyme Intermediate.
Biochemistry, 53, 2014
4CN6
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BU of 4cn6 by Molmil
GlgE isoform 1 from Streptomyces coelicolor E423A mutant with maltose bound
Descriptor: ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE MALTOSYLTRANSFERASE 1, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Syson, K, Stevenson, C.E.M, Rashid, A.M, Saalbach, G, Tang, M, Tuukanen, A, Svergun, D.I, Withers, S.G, Lawson, D.M, Bornemann, S.
Deposit date:2014-01-21
Release date:2014-05-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural Insight Into How Streptomyces Coelicolor Maltosyl Transferase Glge Binds Alpha-Maltose 1-Phosphate and Forms a Maltosyl-Enzyme Intermediate.
Biochemistry, 53, 2014
2RO5
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BU of 2ro5 by Molmil
RDC-refined solution structure of the N-terminal DNA recognition domain of the Bacillus subtilis transition-state regulator SpoVT
Descriptor: Stage V sporulation protein T
Authors:Sullivan, D.M, Bobay, B.G, Kojetin, D.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J.
Deposit date:2008-03-08
Release date:2008-11-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Insights into the nature of DNA binding of AbrB-like transcription factors
Structure, 16, 2008
1OVN
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BU of 1ovn by Molmil
Crystal Structure and Functional Analysis of Drosophila Wind-- a PDI-Related Protein
Descriptor: CESIUM ION, Windbeutel
Authors:Ma, Q, Guo, C, Barnewitz, K, Sheldrick, G.M, Soling, H.D, Uson, I, Ferrari, D.M.
Deposit date:2003-03-27
Release date:2004-02-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and functional analysis of Drosophila Wind, a protein-disulfide isomerase-related protein.
J.Biol.Chem., 278, 2003
2AQ2
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BU of 2aq2 by Molmil
Crystal structure of T-cell receptor V beta domain variant complexed with superantigen SEC3 mutant
Descriptor: Enterotoxin type C-3, SODIUM ION, SULFATE ION, ...
Authors:Cho, S, Swaminathan, C.P, Yang, J, Kerzic, M.C, Guan, R, Kieke, M.C, Kranz, D.M, Mariuzza, R.A, Sundberg, E.J.
Deposit date:2005-08-17
Release date:2006-03-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction.
Structure, 13, 2005
1P4F
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BU of 1p4f by Molmil
DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH BOUND INHIBITOR FRAGMENT
Descriptor: 5,6-Dihydro-benzo[H]cinnolin-3-ylamine, Death-associated protein kinase 1
Authors:Velentza, A.V, Wainwright, M.S, Zasadzki, M, Mirzoeva, S, Haiech, J, Focia, P.J, Egli, M, Watterson, D.M.
Deposit date:2003-04-23
Release date:2004-09-28
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An aminopyridazine-based inhibitor of a pro-apoptotic protein kinase attenuates hypoxia-ischemia induced acute brain injury.
Bioorg.Med.Chem.Lett., 13, 2003
1P7T
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BU of 1p7t by Molmil
Structure of Escherichia coli malate synthase G:pyruvate:acetyl-Coenzyme A abortive ternary complex at 1.95 angstrom resolution
Descriptor: ACETYL COENZYME *A, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Anstrom, D.M, Kallio, K, Remington, S.J.
Deposit date:2003-05-05
Release date:2003-09-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Escherichia Coli Malate Synthase G:pyruvate:acetyl-coenzyme A Abortive Ternary Complex at 1.95 Angstrom Resolution
Protein Sci., 12, 2003
1OIF
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BU of 1oif by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, BETA-GLUCOSIDASE
Authors:Gloster, T, Zechel, D, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-06-16
Release date:2003-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
1OIM
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BU of 1oim by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: 1-DEOXYNOJIRIMYCIN, BETA-GLUCOSIDASE A
Authors:Gloster, T, Zechel, D.L, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-06-19
Release date:2003-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
2AQ1
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BU of 2aq1 by Molmil
Crystal structure of T-cell receptor V beta domain variant complexed with superantigen SEC3 mutant
Descriptor: Enterotoxin type C-3, T-cell receptor beta chain V
Authors:Cho, S, Swaminathan, C.P, Yang, J, Kerzic, M.C, Guan, R, Kieke, M.C, Kranz, D.M, Mariuzza, R.A, Sundberg, E.J.
Deposit date:2005-08-17
Release date:2006-03-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction.
Structure, 13, 2005
2HEV
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BU of 2hev by Molmil
Crystal structure of the complex between OX40L and OX40
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 4, Tumor necrosis factor receptor superfamily member 4
Authors:Hymowitz, S.G, Compaan, D.M.
Deposit date:2006-06-22
Release date:2006-08-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The Crystal Structure of the Costimulatory OX40-OX40L Complex.
Structure, 14, 2006
2HEW
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BU of 2hew by Molmil
The X-ray crystal structure of murine OX40L
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Tumor necrosis factor ligand superfamily member 4
Authors:Hymowitz, S.G, Compaan, D.M.
Deposit date:2006-06-22
Release date:2006-08-29
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Crystal Structure of the Costimulatory OX40-OX40L Complex.
Structure, 14, 2006
2UY8
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BU of 2uy8 by Molmil
R92A mutant of Bacillus subtilis Oxalate Decarboxylase OxdC
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, OXALATE DECARBOXYLASE OXDC
Authors:Just, V.J, Burrell, M.R, Bowater, L, McRobbie, I, Stevenson, C.E.M, Lawson, D.M, Bornemann, S.
Deposit date:2007-04-03
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Identity of the Active Site of Oxalate Decarboxylase and the Importance of the Stability of Active-Site Lid Conformations.
Biochem.J., 407, 2007
2UY9
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BU of 2uy9 by Molmil
E162A mutant of Bacillus subtilis Oxalate Decarboxylase OxdC
Descriptor: MANGANESE (II) ION, OXALATE DECARBOXYLASE OXDC
Authors:Just, V.J, Burrell, M.R, Bowater, L, McRobbie, I, Stevenson, C.E.M, Lawson, D.M, Bornemann, S.
Deposit date:2007-04-03
Release date:2007-08-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Identity of the Active Site of Oxalate Decarboxylase and the Importance of the Stability of Active-Site Lid Conformations.
Biochem.J., 407, 2007
2DAA
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BU of 2daa by Molmil
CRYSTALLOGRAPHIC STRUCTURE OF D-AMINO ACID AMINOTRANSFERASE INACTIVATED BY D-CYCLOSERINE
Descriptor: D-AMINO ACID AMINOTRANSFERASE, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Peisach, D, Chipman, D.M, Ringe, D.
Deposit date:1997-10-27
Release date:1998-03-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:D-Cycloserine Inactivation of D-Amino Acid Aminotransferase Leads to a Stable Noncovalent Protein Complex with an Aromatic Cycloserine-Plp Derivative
J.Am.Chem.Soc., 120, 1998
2HQ3
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BU of 2hq3 by Molmil
Solution NMR structure of the apo-NosL protein from Achromobacter cycloclastes
Descriptor: NosL protein
Authors:Taubner, L.M, McGuirl, M.A, Dooley, D.M, Copie, V.
Deposit date:2006-07-18
Release date:2006-10-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Studies of Apo Nosl, an Accessory Protein of the Nitrous Oxide Reductase System: Insights from Structural Homology with MerB, a Mercury Resistance Protein.
Biochemistry, 45, 2006
2HPU
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BU of 2hpu by Molmil
Solution NMR structure of the apo-NosL protein from Achromobacter cycloclastes
Descriptor: NosL protein
Authors:Taubner, L.M, McGuirl, M.A, Dooley, D.M, Copie, V.
Deposit date:2006-07-17
Release date:2006-10-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Studies of Apo Nosl, an Accessory Protein of the Nitrous Oxide Reductase System: Insights from Structural Homology with MerB, a Mercury Resistance Protein.
Biochemistry, 45, 2006
2IBK
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BU of 2ibk by Molmil
Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*AP*T)-3', ...
Authors:Bauer, J, Ling, H, Sayer, J.M, Xing, G, Yagi, H, Jerina, D.M.
Deposit date:2006-09-11
Release date:2007-09-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A structural gap in Dpo4 supports mutagenic bypass of a major benzo[a]pyrene dG adduct in DNA through template misalignment.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3TVM
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BU of 3tvm by Molmil
Structure of the mouse CD1d-SMC124-iNKT TCR complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Girardi, E, Li, Y, Zajonc, D.M.
Deposit date:2011-09-20
Release date:2012-02-01
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Glycolipids that Elicit IFN-gama-Biased Responses from Natural Killer T Cells
Chem.Biol., 18, 2011
9B9Z
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BU of 9b9z by Molmil
Structural mechanism of CB1R binding to peripheral and biased inverse agonists
Descriptor: (4S)-3-(4-chlorophenyl)-N'-[(1E)-ethanimidoyl]-4-phenyl-N-[4-(trifluoromethyl)benzene-1-sulfonyl]-4,5-dihydro-1H-pyrazole-1-carboximidamide, CNb36, Cannabinoid receptor 1,Glycogen synthase
Authors:Kumari, P, Dvoracsko, S, Enos, M.D, Ramesh, K, Lim, D, Hassan, S.A, Kunos, G, Cinar, R, Iyer, M.R, Rosenbaum, D.M.
Deposit date:2024-04-03
Release date:2024-11-20
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural mechanism of CB 1 R binding to peripheral and biased inverse agonists.
Nat Commun, 15, 2024
9B9Y
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Structural mechanism of CB1R binding to peripheral and biased inverse agonists
Descriptor: CNb36, Cannabinoid receptor 1,Glycogen synthase, N-[(2S,3S)-4-(4-chlorophenyl)-3-(3-cyanophenyl)butan-2-yl]-2-methyl-2-{[5-(trifluoromethyl)pyridin-2-yl]oxy}propanamide
Authors:Kumari, P, Dvoracsko, S, Enos, M.D, Ramesh, K, Lim, D, Hassan, S.A, Kunos, G, Iyer, M.R, Rosenbaum, D.M.
Deposit date:2024-04-03
Release date:2024-11-20
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural mechanism of CB 1 R binding to peripheral and biased inverse agonists.
Nat Commun, 15, 2024
2VVW
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BU of 2vvw by Molmil
Structure of Vaccinia virus protein A52
Descriptor: PROTEIN A52
Authors:Graham, S.C, Bahar, M.W, Cooray, S, Chen, R.A.-J, Whalen, D.M, Abrescia, N.G.A, Alderton, D, Owens, R.J, Stuart, D.I, Smith, G.L, Grimes, J.M.
Deposit date:2008-06-12
Release date:2008-08-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Vaccinia Virus Proteins A52 and B14 Share a Bcl-2-Like Fold But Have Evolved to Inhibit NF-kappaB Rather Than Apoptosis
Plos Pathog., 4, 2008

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