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PDB: 22600 results

8Q94
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BU of 8q94 by Molmil
Crystal structure of The SARS-COV-2 BA.2.75 RBD with neutralizing-VHHs Re32D03 and Ma3B12
Descriptor: Nanobody Ma3B12, Nanobody Re32D03, Spike protein S1
Authors:Aksu, M, Guttler, T, Gorlich, D.
Deposit date:2023-08-19
Release date:2023-12-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nanobodies to multiple spike variants and inhalation of nanobody-containing aerosols neutralize SARS-CoV-2 in cell culture and hamsters.
Antiviral Res., 221, 2023
3JY6
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BU of 3jy6 by Molmil
Crystal structure of LacI Transcriptional regulator from Lactobacillus brevis
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Transcriptional regulator, ...
Authors:Syed Ibrahim, B, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-09-21
Release date:2009-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of LacI Transcriptional regulator from Lactobacillus brevis
To be Published
8QB3
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BU of 8qb3 by Molmil
ADDobody zinc containing condition
Descriptor: ADDobody, ZINC ION
Authors:Buzas, D, Toelzer, C, Berger, I, Schaffitzel, C.
Deposit date:2023-08-24
Release date:2023-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Engineering the ADDobody protein scaffold for generation of high-avidity ADDomer super-binders.
Structure, 32, 2024
2OKZ
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BU of 2okz by Molmil
MVGGVV peptide derived from Alzheimer's A-beta
Descriptor: peptide from Alzheimer's A-beta
Authors:Sawaya, M.R, Sambashivan, S, Eisenberg, D.
Deposit date:2007-01-18
Release date:2007-01-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
6S45
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BU of 6s45 by Molmil
Room temperature structure of the dark state of the LOV2 domain of phototropin-2 from Arabidopsis thaliana determined with a serial crystallography approach
Descriptor: FLAVIN MONONUCLEOTIDE, Phototropin-2
Authors:Aumonier, S, Santoni, G, Gotthard, G, von Stetten, D, Leonard, G, Royant, A.
Deposit date:2019-06-26
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Millisecond time-resolved serial oscillation crystallography of a blue-light photoreceptor at a synchrotron.
Iucrj, 7, 2020
8QB1
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BU of 8qb1 by Molmil
C-terminal domain of mirolase from Tannerella forsythia
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Mirolase, ...
Authors:Gomis-Ruth, F.X, Rodriguez-Banqueri, A, Mizgalska, D, Veillard, F, Goulas, T, Eckhard, U, Potempa, J.
Deposit date:2023-08-23
Release date:2024-02-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Structural and functional insights into the C-terminal signal domain of the Bacteroidetes type-IX secretion system.
Open Biology, 14, 2024
2OYN
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BU of 2oyn by Molmil
Crystal structure of CDP-bound protein MJ0056 from Methanococcus jannaschii, Pfam DUF120
Descriptor: CYTIDINE-5'-DIPHOSPHATE, Hypothetical protein MJ0056, SODIUM ION
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Lau, C, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-02-22
Release date:2007-03-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of hypothetical protein from Methanococcus jannaschii bound to CDP
TO BE PUBLISHED
4EDI
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BU of 4edi by Molmil
Disulfide bonded EutL from Clostridium perfringens
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Crowley, C.S, Kopstein, J.S, Yeates, T.O.
Deposit date:2012-03-27
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
3JCT
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BU of 3jct by Molmil
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Descriptor: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
Authors:Wu, S, Kumcuoglu, B, Yan, K.G, Brown, H, Zhang, Y.X, Tan, D, Gamalinda, M, Yuan, Y, Li, Z.F, Jakovljevic, J, Ma, C.Y, Lei, J.L, Dong, M.Q, Woolford Jr, J.L, Gao, N.
Deposit date:2016-03-09
Release date:2016-06-01
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes
Nature, 534, 2016
7XP9
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BU of 7xp9 by Molmil
Phytophthora infesfans RxLR effector AVRvnt1
Descriptor: RxLR effector protein Avr-vnt11
Authors:Xing, W, Hu, Q, Zhou, J, Yao, D.
Deposit date:2022-05-04
Release date:2023-06-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Chloroplast Protein GLYK Hijacked by Phytophthora Infestans Effector AVRvnt1 in Cytoplasm to Activate NLR
To Be Published
3JSR
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BU of 3jsr by Molmil
X-Ray structure of All0216 protein from Nostoc sp. PCC 7120 at the resolution 1.8A. Northeast Structural Genomics Consortium target NsR236
Descriptor: All0216 protein, POTASSIUM ION
Authors:Kuzin, A.P, Chen, Y, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-09-10
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-Ray structure of All0216 protein from Nostoc sp. PCC 7120 at the resolution 1.8A
To be Published
7XPC
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BU of 7xpc by Molmil
Complex structure of D-glycerate-3-kinase(GLYK) and AVRvnt1
Descriptor: D-glycerate-3-kinase (GLYK), RxLR effector protein Avr-vnt11
Authors:Hu, Q, Zhou, J, Yao, D, Xing, W.
Deposit date:2022-05-04
Release date:2023-06-07
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Chloroplast Protein GLYK Hijacked by Phytophthora Infestans Effector AVRvnt1 in Cytoplasm to Activate NLR
To Be Published
2PCS
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BU of 2pcs by Molmil
Crystal structure of conserved protein from Geobacillus kaustophilus
Descriptor: Conserved protein, UNKNOWN LIGAND
Authors:Bonanno, J.B, Gilmore, J, Bain, K.T, Wu, B, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-30
Release date:2007-04-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of conserved protein from Geobacillus kaustophilus
To be Published
3J9X
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BU of 3j9x by Molmil
A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA
Descriptor: DNA, coat protein
Authors:DiMaio, F, Yu, X, Rensen, E, Krupovic, M, Prangishvili, D, Egelman, E.
Deposit date:2015-03-21
Release date:2015-06-03
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A virus that infects a hyperthermophile encapsidates A-form DNA.
Science, 348, 2015
2OL9
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BU of 2ol9 by Molmil
Peptide corresponding to residues 170-175 of human prion
Descriptor: peptide from human prion
Authors:Apostol, M.A, Sawaya, M.R, Eisenberg, D.
Deposit date:2007-01-18
Release date:2007-01-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
2OMP
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BU of 2omp by Molmil
LYQLEN peptide derived from human insulin chain A, residues 13-18
Descriptor: LYQLEN peptide derived from human insulin chain A, residues 13-18
Authors:Ivanova, M.I, Sawaya, M.R, Eisenberg, D.
Deposit date:2007-01-22
Release date:2007-01-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
8R4I
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BU of 8r4i by Molmil
Cryo-EM structure of human islet amyloid polypeptide (hIAPP)
Descriptor: Islet amyloid polypeptide
Authors:Ooi, S.A, Valli, D, Maj, M.
Deposit date:2023-11-13
Release date:2024-03-06
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.01 Å)
Cite:Improving cryo-EM grids for amyloid fibrils using interface-active solutions and spectator proteins.
Biophys.J., 123, 2024
6S6C
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BU of 6s6c by Molmil
Ground state structure of Archaerhodopsin-3 at 100K
Descriptor: Archaerhodopsin-3, CALCIUM ION, CHLORIDE ION, ...
Authors:Moraes, I, Judge, P.J, Axford, D, Kwan, T.O.C, Bada Juarez, J.F, Vinals, J, Watts, A.
Deposit date:2019-07-02
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Structures of the archaerhodopsin-3 transporter reveal that disordering of internal water networks underpins receptor sensitization.
Nat Commun, 12, 2021
2OXC
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BU of 2oxc by Molmil
Human DEAD-box RNA helicase DDX20, DEAD domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Probable ATP-dependent RNA helicase DDX20
Authors:Karlberg, T, Ogg, D, Arrowsmith, C.H, Berglund, H, Busam, R.D, Collins, R, Dahlgren, L.G, Edwards, A, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Hogbom, M, Johansson, I, Kotenyova, T, Lehtio, L, Moche, M, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
Deposit date:2007-02-20
Release date:2007-02-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Human DEAD-box RNA helicase DDX20
To be Published
2OPV
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BU of 2opv by Molmil
Solution NMR Structure of the Second Domain of KSRP
Descriptor: KHSRP protein
Authors:Diaz-Moreno, I, Ramos, A, Garcia-Mayoral, M.F, Hollingworth, D.
Deposit date:2007-01-30
Release date:2008-02-26
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The NMR Structures of the N-terminal Domains of KSRP
To be Published
3K2Q
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BU of 3k2q by Molmil
Crystal structure of Pyrophosphate-dependent phosphofructokinase from Marinobacter aquaeolei, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MqR88
Descriptor: Pyrophosphate-dependent phosphofructokinase, SODIUM ION
Authors:Seetharaman, J, Lew, S, Wang, D, Neely, H, Janjua, K, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-09-30
Release date:2009-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Pyrophosphate-dependent phosphofructokinase from Marinobacter aquaeolei, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MqR88
To be Published
6S89
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BU of 6s89 by Molmil
Crystal Structure of EGFR-T790M/C797S in Complex with Covalent Pyrrolopyrimidine 19g
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Epidermal growth factor receptor, ~{N}-[3-[6-[4-(4-methylpiperazin-1-yl)phenyl]-4-propan-2-yloxy-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]phenyl]propanamide
Authors:Niggenaber, J, Mueller, M.P, Rauh, D.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Inhibition of osimertinib-resistant epidermal growth factor receptor EGFR-T790M/C797S.
Chem Sci, 10, 2019
4ERD
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BU of 4erd by Molmil
Crystal structure of the C-terminal domain of Tetrahymena telomerase protein p65 in complex with stem IV of telomerase RNA
Descriptor: 5'-R(P*GP*GP*UP*CP*GP*AP*CP*AP*UP*CP*UP*UP*CP*GP*GP*AP*UP*GP*GP*AP*CP*C)-3', POTASSIUM ION, Telomerase associated protein p65
Authors:Singh, M, Wang, Z, Koo, B.-K, Patel, A, Cascio, D, Collins, K, Feigon, J.
Deposit date:2012-04-19
Release date:2012-06-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.589 Å)
Cite:Structural Basis for Telomerase RNA Recognition and RNP Assembly by the Holoenzyme La Family Protein p65.
Mol.Cell, 47, 2012
3K4E
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BU of 3k4e by Molmil
Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site A
Descriptor: RNA (5'-R(P*CP*UP*UP*GP*UP*AP*UP*AP*UP*A)-3'), mRNA-binding protein PUF3
Authors:Zhu, D, Stumpf, C.R, Krahn, J.M, Wickens, M, Hall, T.M.T.
Deposit date:2009-10-05
Release date:2009-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs.
Proc.Natl.Acad.Sci.USA, 106, 2009
3JCL
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BU of 3jcl by Molmil
Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
Descriptor: Spike glycoprotein
Authors:Walls, A.C, Tortorici, M.A, Bosch, B.J, Frenz, B, Rottier, P.J.M, DiMaio, F, Rey, F.A, Veesler, D.
Deposit date:2015-12-21
Release date:2016-02-03
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer.
Nature, 531, 2016

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PDB entries from 2024-10-16

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