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PDB: 22202 件

1ZOY
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Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
分子名称: FAD-binding protein, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
著者Sun, F, Huo, X, Zhai, Y, Wang, A, Xu, J, Su, D, Bartlam, M, Rao, Z.
登録日2005-05-15
公開日2005-07-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Mitochondrial Respiratory Membrane Protein Complex II
Cell(Cambridge,Mass.), 121, 2005
6YOR
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Structure of the SARS-CoV-2 spike S1 protein in complex with CR3022 Fab
分子名称: IgG H chain, IgG L chain, Spike glycoprotein
著者Huo, J, Zhao, Y, Ren, J, Zhou, D, Duyvesteyn, H.M.E, Carrique, L, Malinauskas, T, Ruza, R.R, Shah, P.N.M, Fry, E.E, Owens, R, Stuart, D.I.
登録日2020-04-15
公開日2020-04-29
最終更新日2022-04-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike.
Cell Host Microbe, 28, 2020
4S0I
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Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: 11BIF, 42F, 79S, and 123A mutant
分子名称: Threonine--tRNA ligase
著者Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G.
登録日2014-12-31
公開日2015-03-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Transition states. Trapping a transition state in a computationally designed protein bottle.
Science, 347, 2015
6QP7
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Drosophila Semaphorin 2a
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Robinson, R.A, Rozbesky, D, Harlos, K, Siebold, C, Jones, E.Y.
登録日2019-02-13
公開日2019-08-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Diversity of oligomerization in Drosophila semaphorins suggests a mechanism of functional fine-tuning.
Nat Commun, 10, 2019
6QPW
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Structural basis of cohesin ring opening
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Sister chromatid cohesion protein 1, ...
著者Panne, D, Muir, K.W, Li, Y, Weis, F.
登録日2019-02-15
公開日2020-02-05
最終更新日2020-03-18
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The structure of the cohesin ATPase elucidates the mechanism of SMC-kleisin ring opening.
Nat.Struct.Mol.Biol., 27, 2020
1Z19
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Crystal structure of a lambda integrase(75-356) dimer bound to a COC' core site
分子名称: 33-MER, 5'-D(*CP*TP*CP*GP*TP*TP*CP*AP*GP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(P*TP*TP*TP*AP*TP*AP*CP*TP*AP*AP*GP*TP*TP*GP*GP*CP*AP*TP*TP*A)-3', ...
著者Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T.
登録日2005-03-03
公開日2005-06-28
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
4TKH
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The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with myristic acid
分子名称: Fatty acid-binding protein, heart, HEXAETHYLENE GLYCOL, ...
著者Sugiyama, S, Matsuoka, S, Mizohata, E, Matsuoka, D, Ishida, H, Hirose, M, Kakinouchi, K, Hara, T, Murakami, S, Inoue, T, Murata, M.
登録日2014-05-26
公開日2015-01-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.93 Å)
主引用文献Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
7UV5
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The crystal structure of Papain-Like Protease of SARS CoV-2, C111S/D286N mutant, in complex with a Lys48-linked di-ubiquitin
分子名称: 1,2-ETHANEDIOL, Papain-like protease nsp3, Ubiquitin, ...
著者Osipiuk, J, Tesar, C, Endres, M, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2022-04-29
公開日2022-05-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin.
Nat Commun, 14, 2023
4TKJ
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The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitic acid
分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, Fatty acid-binding protein, heart, ...
著者Sugiyama, S, Matsuoka, S, Mizohata, E, Matsuoka, D, Ishida, H, Hirose, M, Kakinouchi, K, Hara, T, Murakami, S, Inoue, T, Murata, M.
登録日2014-05-26
公開日2015-01-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.87 Å)
主引用文献Water-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein
Angew.Chem.Int.Ed.Engl., 54, 2015
7A4M
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Cryo-EM structure of mouse heavy-chain apoferritin at 1.22 A
分子名称: FE (III) ION, Ferritin heavy chain, ZINC ION
著者Nakane, T, Kotecha, A, Sente, A, Yamashita, K, McMullan, G, Masiulis, S, Brown, P.M.G.E, Grigoras, I.T, Malinauskaite, L, Malinauskas, T, Miehling, J, Yu, L, Karia, D, Pechnikova, E.V, de Jong, E, Keizer, J, Bischoff, M, McCormack, J, Tiemeijer, P, Hardwick, S.W, Chirgadze, D.Y, Murshudov, G, Aricescu, A.R, Scheres, S.H.W.
登録日2020-08-20
公開日2020-10-28
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (1.22 Å)
主引用文献Single-particle cryo-EM at atomic resolution.
Nature, 587, 2020
6ZZ1
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Crystal structure of MLKL executioner domain in complex with a covalent inhibitor
分子名称: 7-(2-methoxyethoxymethyl)-1,3-dimethyl-purine-2,6-dione, Mixed lineage kinase domain-like protein
著者Fiegen, D, Bauer, M, Nar, H.
登録日2020-08-03
公開日2020-12-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Locking mixed-lineage kinase domain-like protein in its auto-inhibited state prevents necroptosis.
Proc.Natl.Acad.Sci.USA, 117, 2020
3LBD
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BU of 3lbd by Molmil
LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO 9-CIS RETINOIC ACID
分子名称: (9cis)-retinoic acid, RETINOIC ACID RECEPTOR GAMMA
著者Klaholz, B.P, Renaud, J.-P, Mitschler, A, Moras, D, Structural Proteomics in Europe (SPINE)
登録日1998-02-04
公開日1999-03-02
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Conformational adaptation of agonists to the human nuclear receptor RAR gamma.
Nat.Struct.Biol., 5, 1998
4TM6
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BU of 4tm6 by Molmil
Crystal Structure of EutL from Clostridium Perfringens at 298K
分子名称: Ethanolamine utilization protein EutL, SODIUM ION
著者Thompson, M.C, Cascio, D, Yeates, T.O.
登録日2014-05-31
公開日2015-03-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9002 Å)
主引用文献An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
6QUI
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GHK tagged GFP variant at 17Kev
分子名称: COPPER (II) ION, GLYCEROL, Green fluorescent protein, ...
著者Huyton, T, Gorlich, D.
登録日2019-02-27
公開日2020-05-27
最終更新日2022-12-07
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography.
Acta Crystallogr D Struct Biol, 76, 2020
6QUV
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Crystal Structure of KRAS-G12D in complex with GMP-PCP and compound 15R
分子名称: (6~{a}~{R},11~{b}~{S})-6~{a}-(1,4-dimethylpiperidin-4-yl)-7,11~{b}-dihydro-6~{H}-indolo[2,3-c]isoquinolin-5-one, GTPase KRas, MAGNESIUM ION, ...
著者Fischer, G, Kessler, D, Muellauer, B, Wolkerstorfer, B.
登録日2019-02-28
公開日2019-07-31
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.475 Å)
主引用文献KRAS Binders Hidden in Nature.
Chemistry, 25, 2019
7AAA
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BU of 7aaa by Molmil
Crystal structure of the catalytic domain of human PARP1 (apo)
分子名称: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Poly [ADP-ribose] polymerase 1, ...
著者Schimpl, M, Ogden, T.E.H, Yang, J.-C, Underwood, E, Rawlins, P.B, Johannes, J.W, Easton, L.E, Embrey, K.J, Neuhaus, D.
登録日2020-09-04
公開日2021-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Dynamics of the HD regulatory subdomain of PARP-1; substrate access and allostery in PARP activation and inhibition.
Nucleic Acids Res., 49, 2021
7A5V
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CryoEM structure of a human gamma-aminobutyric acid receptor, the GABA(A)R-beta3 homopentamer, in complex with histamine and megabody Mb25 in lipid nanodisc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Nakane, T, Kotecha, A, Sente, A, Yamashita, K, McMullan, G, Masiulis, S, Brown, P.M.G.E, Grigoras, I.T, Malinauskaite, L, Malinauskas, T, Miehling, J, Yu, L, Karia, D, Pechnikova, E.V, de Jong, E, Keizer, J, Bischoff, M, McCormack, J, Tiemeijer, P, Hardwick, S.W, Chirgadze, D.Y, Murshudov, G, Aricescu, A.R, Scheres, S.H.W.
登録日2020-08-22
公開日2020-11-18
最終更新日2020-11-25
実験手法ELECTRON MICROSCOPY (1.7 Å)
主引用文献Single-particle cryo-EM at atomic resolution.
Nature, 587, 2020
6ZML
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CryoEM Structure of Merkel Cell Polyomavirus Virus-like Particle
分子名称: Capsid protein VP1
著者Bayer, N.J, Januliene, D, Stehle, T, Moeller, A, Blaum, B.S.
登録日2020-07-03
公開日2020-08-05
最終更新日2020-10-07
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of Merkel Cell Polyomavirus Capsid and Interaction with Its Glycosaminoglycan Attachment Receptor.
J.Virol., 94, 2020
6QYM
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The cryo-EM structure of the connector of the genome empited bacteriophage phi29
分子名称: Portal protein
著者Xu, J, Wang, D, Gui, M, Xiang, Y.
登録日2019-03-09
公開日2019-06-12
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
4TM9
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Crystal Structure of Human Transthyretin Thr119Trp Mutant
分子名称: Transthyretin
著者Saelices, L, Cascio, D, Sawaya, M, Eisenberg, D.S.
登録日2014-05-31
公開日2015-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Uncovering the Mechanism of Aggregation of Human Transthyretin.
J.Biol.Chem., 290, 2015
6QZ8
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Structure of Mcl-1 in complex with compound 10d
分子名称: (2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
著者Dokurno, P, Szlavik, Z, Ondi, L, Csekei, M, Paczal, A, Szabo, Z.B, Radics, G, Murray, J, Davidson, J, Chen, I, Davis, B, Hubbard, R.E, Pedder, C, Surgenor, A.E, Smith, J, Robertson, A, LeToumelin-Braizat, G, Cauquil, N, Zarka, M, Demarles, D, Perron-Sierra, F, Geneste, O, Kotschy, A.
登録日2019-03-11
公開日2019-08-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity.
J.Med.Chem., 62, 2019
7ACQ
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CRYSTAL STRUCTURE OF INACTIVE KRAS G12D (GDP) IN COMPLEX WITH THE SOAKED DIMERIC INHIBITOR BI-5747
分子名称: (3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Kessler, D.
登録日2020-09-11
公開日2020-11-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献CRYSTAL STRUCTURE OF INACTIVE KRAS G12D (GDP) IN COMPLEX WITH THE SOAKED DIMERIC INHIBITOR BI00925747
To Be Published
5V2G
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De Novo Design of Novel Covalent Constrained Meso-size Peptide Scaffolds with Unique Tertiary Structures
分子名称: 1,3,5-tris(bromomethyl)benzene, 20-mer Peptide
著者Dang, B, Wu, H, Mulligan, V.K, Mravic, M, Wu, Y, Lemmin, T, Ford, A, Silva, D, Baker, D, DeGrado, W.F.
登録日2017-03-03
公開日2017-09-27
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6ZMP
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Crystal structure of Chaetomium thermophilum Naa20 in complex with a bisubstrate analogue
分子名称: CARBOXYMETHYL COENZYME *A, CMC-MET-ASP-GLU-LEU, N-terminal acetyltransferase-like protein
著者Layer, D, Kopp, J, Sinning, I.
登録日2020-07-03
公開日2020-12-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Structural basis of Naa20 activity towards a canonical NatB substrate.
Commun Biol, 4, 2021
6QUE
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Structure of ovine transhydrogenase in the presence of NADP+ in a "single face-down" conformation
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Nicotinamide nucleotide transhydrogenase
著者Kampjut, D, Sazanov, L.A.
登録日2019-02-27
公開日2019-08-28
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure and mechanism of mitochondrial proton-translocating transhydrogenase.
Nature, 573, 2019

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