Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53526 results

8SY8
DownloadVisualize
BU of 8sy8 by Molmil
Crystal structure of TsaC
Descriptor: 4-formylbenzenesulfonate dehydrogenase TsaC
Authors:Boggs, D.G, Tian, J, Bridwell-Rabb, J.
Deposit date:2023-05-24
Release date:2023-09-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The NADH recycling enzymes TsaC and TsaD regenerate reducing equivalents for Rieske oxygenase chemistry.
J.Biol.Chem., 299, 2023
6XUZ
DownloadVisualize
BU of 6xuz by Molmil
CRYSTAL STRUCTURE OF BRD4-BD1 WITH COMPOUND 4
Descriptor: 6-[1-[(2~{S})-1-methoxypropan-2-yl]-6-[(3~{S})-3-methylmorpholin-4-yl]imidazo[4,5-c]pyridin-2-yl]-3-methyl-~{N}-propan-2-yl-[1,2,4]triazolo[4,3-a]pyrazin-8-amine, Bromodomain-containing protein 4
Authors:Bader, G, Kessler, D, Wolkerstorfer, B.
Deposit date:2020-01-21
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:PI by NMR: Probing CH-pi Interactions in Protein-Ligand Complexes by NMR Spectroscopy.
Angew.Chem.Int.Ed.Engl., 59, 2020
7URS
DownloadVisualize
BU of 7urs by Molmil
Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, COV11 Fab HEAVY CHAIN, ...
Authors:Tolbert, W.D, Pazgier, M.
Deposit date:2022-04-22
Release date:2022-05-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The molecular basis of the neutralization breadth of the RBD-specific antibody CoV11.
Front Immunol, 14, 2023
8X72
DownloadVisualize
BU of 8x72 by Molmil
The Crystal Structure of PLK1 from Biortus.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Wu, B.
Deposit date:2023-11-22
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Crystal Structure of PLK1 from Biortus.
To Be Published
6VRD
DownloadVisualize
BU of 6vrd by Molmil
Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, RNA (5'-R(*(OMC)P*(N7X)P*(T39)P*(C5L)P*(A2M))-D(P*(SC)P*(PST)P*(SC)P*(AS)P*(SC)P*(SC)P*(SC)P*(AS)P*(SC)P*(PST))-R(P*(6OO)P*(RFJ)P*(6OO)P*(6OO)P*(6NW))-3'), ...
Authors:Cho, Y.-J, Butler, D.
Deposit date:2020-02-07
Release date:2021-02-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level
To Be Published
8X23
DownloadVisualize
BU of 8x23 by Molmil
The Crystal Structure of MAPK13 from Biortus.
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Mitogen-activated protein kinase 13
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Pan, W.
Deposit date:2023-11-09
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of MAPK13 from Biortus.
To Be Published
7URQ
DownloadVisualize
BU of 7urq by Molmil
Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, COV11 Fab HEAVY CHAIN, ...
Authors:Tolbert, W.D, Pazgier, M.
Deposit date:2022-04-22
Release date:2022-05-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The molecular basis of the neutralization breadth of the RBD-specific antibody CoV11.
Front Immunol, 14, 2023
6TP4
DownloadVisualize
BU of 6tp4 by Molmil
Crystal structure of the Orexin-1 receptor in complex with ACT-462206
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, (2~{S})-~{N}-(3,5-dimethylphenyl)-1-(4-methoxyphenyl)sulfonyl-pyrrolidine-2-carboxamide, Orexin receptor type 1, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-12
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.011 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
6CDM
DownloadVisualize
BU of 6cdm by Molmil
Structure of vaccine-elicited HIV-1 neutralizing antibody vFP7.04 in complex with HIV-1 fusion peptide residue 512-519
Descriptor: HIV fusion peptide (512-519), vFP7.04 heavy chain, vFP7.04 light chain
Authors:Xu, K, Liu, K, Kwong, P.D.
Deposit date:2018-02-08
Release date:2018-05-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.408 Å)
Cite:Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
Nat. Med., 24, 2018
8X2A
DownloadVisualize
BU of 8x2a by Molmil
The Crystal Structure of BMX from Biortus.
Descriptor: 1,2-ETHANEDIOL, 4-[(3S)-3-{[(2E)-but-2-enoyl]amino}piperidin-1-yl]-5-fluoro-2,3-dimethyl-1H-indole-7-carboxamide, CHLORIDE ION, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Pan, W.
Deposit date:2023-11-09
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The Crystal Structure of BMX from Biortus.
To Be Published
8P32
DownloadVisualize
BU of 8p32 by Molmil
BB0238 from Borrelia burgdorferi, Se-Met data for Leu240Met mutant
Descriptor: BB0238
Authors:Brangulis, K, Foor, S.D, Shakya, A.K, Rana, V.S, Bista, S, Kitsou, C, Ronzetti, M, Linden, S.B, Altieri, A.S, Akopjana, I, Baljinnyam, B, Nelson, D.C, Simeonov, A, Herzberg, O, Caimano, M.J, Pal, U.
Deposit date:2023-05-16
Release date:2023-10-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A unique borrelial protein facilitates microbial immune evasion.
Mbio, 14, 2023
8TAU
DownloadVisualize
BU of 8tau by Molmil
APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Bodrug, T, Welsh, K.A, Bolhuis, D.L, Paulakonis, E, Martinez-Chacin, R.C, Liu, B, Pinkin, N, Bonacci, T, Cui, L, Xu, P, Roscow, O, Amann, S.J, Grishkovskaya, I, Emanuele, M.J, Harrison, J.S, Steimel, J.P, Hahn, K.M, Zhang, W, Zhong, E, Haselbach, D, Brown, N.G.
Deposit date:2023-06-27
Release date:2023-09-27
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C).
Nat.Struct.Mol.Biol., 30, 2023
6Q41
DownloadVisualize
BU of 6q41 by Molmil
Atomic resolution crystal structure of a BAA collagen heterotrimer
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Leading chain of the BAA collagen heterotrimer, ...
Authors:Jalan, A.A, Hartgerink, J.D, Brear, P, Leitinger, B, Farndale, R.W.
Deposit date:2018-12-05
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Atomic resolution crystal structure of an AAB collagen heterotrimer
Nat.Chem.Biol., 2019
6VYK
DownloadVisualize
BU of 6vyk by Molmil
Cryo-EM structure of mechanosensitive channel MscS in PC-18:1 nanodiscs
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Mechanosensitive channel MscS
Authors:Zhang, Y, Daday, C, Gu, R, Cox, C.D, Martinac, B, Groot, B, Walz, T.
Deposit date:2020-02-27
Release date:2021-02-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Visualization of the mechanosensitive ion channel MscS under membrane tension.
Nature, 590, 2021
7ND2
DownloadVisualize
BU of 7nd2 by Molmil
Cryo-EM structure of the human FERRY complex
Descriptor: Glutamine amidotransferase-like class 1 domain-containing protein 1, Protein phosphatase 1 regulatory subunit 21, Quinone oxidoreductase-like protein 1
Authors:Quentin, D, Klink, B.U, Raunser, S.
Deposit date:2021-01-29
Release date:2022-03-02
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023
6VPZ
DownloadVisualize
BU of 6vpz by Molmil
HLA-B*27:05 presenting an HIV-1 11mer peptide
Descriptor: 11-mer peptide, Beta-2-microglobulin, GLYCEROL, ...
Authors:Pymm, P, Tenzer, S, Wee, E, Weimershaus, M, Burgevin, A, Kollnberger, S, Gerstoft, J, Josephs, T.M, Ladell, K, Mclaren, J.E, Appay, V, Price, D.A, Fugger, L, Bell, J.I, Hansjorg, S, Van Endert, P, Harkiolaki, M, Iversen, A.K.N.
Deposit date:2020-02-04
Release date:2021-02-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Epitope length variants balance protective immune responses and viral escape in HIV-1 infection
Cell Rep, 38, 2022
6IBW
DownloadVisualize
BU of 6ibw by Molmil
Crh5 transglycosylase in complex with NAG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Probable glycosidase crf1
Authors:Fang, W, Bartual, S.G, van Aalten, D.M.F.
Deposit date:2018-12-01
Release date:2019-02-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanisms of redundancy and specificity of the Aspergillus fumigatus Crh transglycosylases.
Nat Commun, 10, 2019
7JUO
DownloadVisualize
BU of 7juo by Molmil
CBP bromodomain complexed with YF2-23
Descriptor: CREB-binding protein, N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(1-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-3-yl)-1H-indol-4-yl}ethanesulfonamide
Authors:Ratia, K.M, Xiong, R, Principe, D, Li, Y, Huang, F, Rana, A, Thatcher, G.
Deposit date:2020-08-20
Release date:2021-09-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:XP-524 is a dual-BET/EP300 inhibitor that represses oncogenic KRAS and potentiates immune checkpoint inhibition in pancreatic cancer.
Proc.Natl.Acad.Sci.USA, 119, 2022
3MHV
DownloadVisualize
BU of 3mhv by Molmil
Crystal Structure of Vps4 and Vta1
Descriptor: Vacuolar protein sorting-associated protein 4, Vacuolar protein sorting-associated protein VTA1
Authors:Yang, D, Hurley, J.H.
Deposit date:2010-04-09
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural role of the Vps4-Vta1 interface in ESCRT-III recycling
Structure, 18, 2010
6XCH
DownloadVisualize
BU of 6xch by Molmil
Room-temperature X-ray Crystal structure of SARS-CoV-2 main protease in complex with Leupeptin
Descriptor: 3C-like proteinase, Leupeptin
Authors:Kneller, D.W, Kovalevsky, A, Coates, L.
Deposit date:2020-06-08
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Malleability of the SARS-CoV-2 3CL M pro Active-Site Cavity Facilitates Binding of Clinical Antivirals.
Structure, 28, 2020
8OU3
DownloadVisualize
BU of 8ou3 by Molmil
Cereblon isoform 4 in complex with novel Benzamide-Type Cereblon Binder 8d
Descriptor: 4-azanyl-~{N}-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-2-fluoranyl-benzamide, Cereblon isoform 4, PHOSPHATE ION, ...
Authors:Heim, C, Bischof, L, Maiwald, S, Hartmann, M.D.
Deposit date:2023-04-21
Release date:2023-11-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Leveraging Ligand Affinity and Properties: Discovery of Novel Benzamide-Type Cereblon Binders for the Design of PROTACs.
J.Med.Chem., 66, 2023
8T1Z
DownloadVisualize
BU of 8t1z by Molmil
Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352) Bound to Neu5Ac (NANA)
Descriptor: DI(HYDROXYETHYL)ETHER, N-acetyl-alpha-neuraminic acid, Sialidase, ...
Authors:Clark, N.D, Malkowski, M.G.
Deposit date:2023-06-05
Release date:2023-10-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Functional and structural analyses reveal that a dual domain sialidase protects bacteria from complement killing through desialylation of complement factors.
Plos Pathog., 19, 2023
8X5L
DownloadVisualize
BU of 8x5l by Molmil
The Crystal Structure of PRKACA from Biortus.
Descriptor: (2S)-2-(4-chlorophenyl)-2-hydroxy-2-[4-(1H-pyrazol-4-yl)phenyl]ethanaminium, SODIUM ION, cAMP-dependent protein kinase catalytic subunit alpha
Authors:Wang, F, Cheng, W, Lv, Z, Lin, D, Pan, W.
Deposit date:2023-11-17
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of PRKACA from Biortus.
To Be Published
6XWQ
DownloadVisualize
BU of 6xwq by Molmil
Structure of glutamate transporter homologue GltTk in the saturated conditions
Descriptor: ASPARTIC ACID, Proton/glutamate symporter, SDF family
Authors:Arkhipova, V, Slotboom, D.J, Guskov, A.
Deposit date:2020-01-24
Release date:2020-03-04
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structural ensemble of a glutamate transporter homologue in lipid nanodisc environment.
Nat Commun, 11, 2020
8T24
DownloadVisualize
BU of 8t24 by Molmil
Crystal Structure of Porphyromonas gingivalis Sialidase (PG_0352)- Fructose bound in CBM
Descriptor: CITRATE ANION, D-fructose, DI(HYDROXYETHYL)ETHER, ...
Authors:Clark, N.D, Malkowski, M.G.
Deposit date:2023-06-05
Release date:2023-10-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Functional and structural analyses reveal that a dual domain sialidase protects bacteria from complement killing through desialylation of complement factors.
Plos Pathog., 19, 2023

225946

数据于2024-10-09公开中

PDB statisticsPDBj update infoContact PDBjnumon