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PDB: 170 results

7B9F
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BU of 7b9f by Molmil
Structure of the mycobacterial ESX-5 Type VII Secretion System hexameric pore complex
Descriptor: EccB5, EccC5, EccD5, ...
Authors:Chojnowski, G, Ritter, C, Beckham, K.S.H, Mullapudi, E, Rettel, M, Savitski, M.M, Mortensen, S.A, Ziemianowicz, D, Kosinski, J, Wilmanns, M.
Deposit date:2020-12-14
Release date:2021-07-07
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the mycobacterial ESX-5 type VII secretion system pore complex.
Sci Adv, 7, 2021
7B9S
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BU of 7b9s by Molmil
Structure of the mycobacterial ESX-5 Type VII Secretion System hexameric pore complex
Descriptor: EccB5, EccC5, EccD5, ...
Authors:Chojnowski, G, Ritter, C, Beckham, K.S.H, Mullapudi, E, Rettel, M, Savitski, M.M, Mortensen, S.A, Ziemianowicz, D, Kosinski, J, Wilmanns, M.
Deposit date:2020-12-14
Release date:2021-07-07
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the mycobacterial ESX-5 type VII secretion system pore complex.
Sci Adv, 7, 2021
7Q5R
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BU of 7q5r by Molmil
Protein community member pyruvate dehydrogenase complex E2 core from C. thermophilum
Descriptor: Acetyltransferase component of pyruvate dehydrogenase complex
Authors:Chojnowski, G, Skalidis, I, Kyrilis, F.L, Tueting, C, Hamdi, F, Kastritis, P.L.
Deposit date:2021-11-04
Release date:2022-02-02
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Cryo-EM and artificial intelligence visualize endogenous protein community members.
Structure, 30, 2022
7Q5Q
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BU of 7q5q by Molmil
Protein community member oxoglutarate dehydrogenase complex E2 core from C. thermophilum
Descriptor: Dihydrolipoyllysine-residue succinyltransferase
Authors:Chojnowski, G, Skalidis, I, Kyrilis, F.L, Tueting, C, Hamdi, F, Kastritis, P.L.
Deposit date:2021-11-04
Release date:2022-02-02
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:Cryo-EM and artificial intelligence visualize endogenous protein community members.
Structure, 30, 2022
7Q5S
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BU of 7q5s by Molmil
Protein community member fatty acid synthase complex from C. thermophilum
Descriptor: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, 3-oxoacyl-[acyl-carrier-protein] reductase
Authors:Chojnowski, G, Skalidis, I, Kyrilis, F.L, Tueting, C, Hamdi, F, Kastritis, P.L.
Deposit date:2021-11-04
Release date:2022-02-02
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (4.47 Å)
Cite:Cryo-EM and artificial intelligence visualize endogenous protein community members.
Structure, 30, 2022
8BX1
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BU of 8bx1 by Molmil
Oct4/Sox2 protein:DNA complex
Descriptor: HOXB1_f, HOXB1_r, POU domain, ...
Authors:Chojnowski, G, Wilmanns, M, Round, E.
Deposit date:2022-12-07
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Oct4-Soc2-HoxB1 complex
To Be Published
8BX2
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BU of 8bx2 by Molmil
Oct4/Sox2 protein:DNA complex
Descriptor: POU domain, class 5, transcription factor 1, ...
Authors:Chojnowski, G, Wilmanns, M, Round, E.
Deposit date:2022-12-07
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Crystal structure of Oct4-Soc2-UTF1 complex
To Be Published
6FJM
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BU of 6fjm by Molmil
tubulin-Disorazole Z complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Disorazole Z, ...
Authors:Menchon, G, Prota, A.E, Lucena Agell, D, Bucher, P, Jansen, R, Irschik, H, Mueller, R, Paterson, I, Diaz, J.F, Altmann, K.-H, Steinmetz, M.O.
Deposit date:2018-01-22
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.
Nat Commun, 9, 2018
6FII
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BU of 6fii by Molmil
Tubulin-Spongistatin complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Menchon, G, Prota, A.E, Lucena Angell, D, Bucher, P, Mueller, R, Paterson, I, Diaz, J.F, Altmann, K.-H, Steinmetz, M.O.
Deposit date:2018-01-18
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.405 Å)
Cite:A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.
Nat Commun, 9, 2018
6FJF
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BU of 6fjf by Molmil
Tubulin-FcMaytansine complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Menchon, G, Prota, A.E, Lucena Angell, D, Bucher, P, Mueller, R, Paterson, I, Diaz, J.F, Altmann, K.-H, Steinmetz, M.O.
Deposit date:2018-01-22
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.
Nat Commun, 9, 2018
4OUN
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BU of 4oun by Molmil
Crystal Structure of Mini-ribonuclease 3 from Bacillus subtilis
Descriptor: Mini-ribonuclease 3
Authors:Chojnowski, G, Czarnecka, J, Nowak, E, Pianka, D, Glow, D, Sabala, I, Skowronek, K, Nowotny, M, Bujnicki, J.M.
Deposit date:2014-02-18
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sequence-specific cleavage of dsRNA by Mini-III RNase
Nucleic Acids Res., 43, 2015
1CQS
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BU of 1cqs by Molmil
CRYSTAL STRUCTURE OF D103E MUTANT WITH EQUILENINEOF KSI IN PSEUDOMONAS PUTIDA
Descriptor: EQUILENIN, PROTEIN : KETOSTEROID ISOMERASE
Authors:Choi, G, Ha, N.C, Kim, S.W, Kim, D.H, Park, S, Oh, B.H, Choi, K.Y.
Deposit date:1999-08-11
Release date:2003-06-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Asp-99 donates a hydrogen bond not to Tyr-14 but to the steroid directly in the catalytic mechanism of Delta 5-3-ketosteroid isomerase from Pseudomonas putida biotype B
Biochemistry, 39, 2000
1EA2
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BU of 1ea2 by Molmil
Pseudoreversion of the Catalytic Activity of Y14F by the Additional Tyrosine-to-Phenylalanine Substitution(s) in the Hydrogen Bond Network of Delta-5-3-Ketosteroid Isomerase from Pheudomonas putida Biotype B
Descriptor: STEROID DELTA-ISOMERASE
Authors:Choi, G, Ha, N.-C, Kim, M.-S, Hong, B.-H, Choi, K.Y.
Deposit date:2000-11-03
Release date:2001-11-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pseudoreversion of the Catalytic Activity of Y14F by the Additional Substitution(S) of Tyrosine with Phenylalanine in the Hydrogen Bond Network of Delta (5)-3-Ketosteroid Isomerase from Pseudomonas Putida Biotype B
Biochemistry, 40, 2001
1LN6
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BU of 1ln6 by Molmil
STRUCTURE OF BOVINE RHODOPSIN (Metarhodopsin II)
Descriptor: RETINAL, RHODOPSIN
Authors:Choi, G, Landin, J, Galan, J.F, Birge, R.R, Albert, A.D, Yeagle, P.L.
Deposit date:2002-05-03
Release date:2002-07-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural studies of metarhodopsin II, the activated form of the G-protein coupled receptor, rhodopsin.
Biochemistry, 41, 2002
5OSK
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BU of 5osk by Molmil
Tubulin-7j complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-(2,5-Dimethoxybenzyl)-7-sulfamoyloxy-6-methoxy-3,4-dihydroquinazolin-2(1H)-one, CALCIUM ION, ...
Authors:Menchon, G, Prota, A.E, Steinmetz, M.O, Potter, B.V.L.
Deposit date:2017-08-17
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Quinazolinone-Based Anticancer Agents: Synthesis, Antiproliferative SAR, Antitubulin Activity, and Tubulin Co-crystal Structure.
J. Med. Chem., 61, 2018
5OV7
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BU of 5ov7 by Molmil
tubulin - rigosertib complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
Authors:Menchon, G, Prota, A.E, Steinmetz, M, Jost, M.
Deposit date:2017-08-28
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Combined CRISPRi/a-Based Chemical Genetic Screens Reveal that Rigosertib Is a Microtubule-Destabilizing Agent.
Mol. Cell, 68, 2017
8H26
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BU of 8h26 by Molmil
Crystal structure of MnmM from S. aureus complexed with SAH (1.50 A)
Descriptor: 16S rRNA (Cytosine(1402)-N(4))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-05
Release date:2023-01-18
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of MnmM from S. aureus complexed with SAH (1.50 A)
To Be Published
8H1A
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BU of 8h1a by Molmil
Crystal structure of MnmM from S. aureus in apo state (1.44 A)
Descriptor: rRNA methylase YtqB
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-01
Release date:2023-01-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H27
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BU of 8h27 by Molmil
Crystal structure of MnmM from S. aureus complexed with SAM (2.04 A)
Descriptor: 16S rRNA (Cytosine(1402)-N(4))-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-05
Release date:2023-01-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H0S
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BU of 8h0s by Molmil
Crystal structure of MnmM from B. subtilis complexed with Gln-TTG anti-codon stem loop and SAM (2.90 A)
Descriptor: Putative rRNA methylase YtqB, RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3'), S-ADENOSYLMETHIONINE
Authors:Kim, J, Lee, J, Cho, G.
Deposit date:2022-09-30
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H0T
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BU of 8h0t by Molmil
Crystal structure of MnmM from B. subtilis complexed with SAH (1.17 A)
Descriptor: Putative rRNA methylase YtqB, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, J, Lee, J, Cho, G.
Deposit date:2022-09-30
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H1B
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BU of 8h1b by Molmil
Crystal structure of MnmM from S. aureus complexed with SAM and tRNA anti-codon stem loop (ASL) (1.55 A)
Descriptor: RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3'), S-ADENOSYLMETHIONINE, SODIUM ION, ...
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-01
Release date:2023-01-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
5GRY
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BU of 5gry by Molmil
Crystal structure of disulfide-bonded diabody
Descriptor: diabody
Authors:Kim, J.H, Song, D.H, Youn, S.J, Kim, J.W, Cho, G, Lee, H, Lee, J.O.
Deposit date:2016-08-12
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.639 Å)
Cite:Crystal structure of mono- and bi-specific diabodies and reduction of their structural flexibility by introduction of disulfide bridges at the Fv interface.
Sci Rep, 6, 2016
5GRU
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BU of 5gru by Molmil
Structure of mono-specific diabody
Descriptor: Maltose-binding periplasmic protein, diabody protein
Authors:Kim, J.H, Song, D.H, Youn, S.J, Cho, G, Lee, H, Lee, J.O.
Deposit date:2016-08-12
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.955 Å)
Cite:Crystal structure of mono- and bi-specific diabodies and reduction of their structural flexibility by introduction of disulfide bridges at the Fv interface.
Sci Rep, 6, 2016
5GS1
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Crystal structure of homo-specific diabody
Descriptor: diabody, heavy chain, light chain
Authors:Kim, J.H, Song, D.H, Youn, S.J, Kim, J.W, Cho, G, Lee, H, Lee, J.O.
Deposit date:2016-08-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mono- and bi-specific diabodies and reduction of their structural flexibility by introduction of disulfide bridges at the Fv interface.
Sci Rep, 6, 2016

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