Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 653 results

6MDW
DownloadVisualize
BU of 6mdw by Molmil
Mechanism of protease dependent DPC repair
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CITRATE ANION, ...
Authors:Li, F, Raczynska, J, Chen, Z, Yu, H.
Deposit date:2018-09-05
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan.
Cell Rep, 26, 2019
6IRO
DownloadVisualize
BU of 6iro by Molmil
the crosslinked complex of ISWI-nucleosome in the ADP-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (167-MER), Histone H2A, ...
Authors:Yan, L.J, Wu, H, Li, X.M, Gao, N, Chen, Z.C.
Deposit date:2018-11-13
Release date:2019-04-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling.
Nat. Struct. Mol. Biol., 26, 2019
7CXZ
DownloadVisualize
BU of 7cxz by Molmil
crystal structure of pco2
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, NICKEL (II) ION, ...
Authors:Guo, Q, Xu, C, Liao, S, Chen, Z.
Deposit date:2020-09-02
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.561 Å)
Cite:Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana.
J.Struct.Biol., 213, 2021
6K1P
DownloadVisualize
BU of 6k1p by Molmil
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (167-MER), ...
Authors:Yan, L.J, Wu, H, Li, X.M, Gao, N, Chen, Z.C.
Deposit date:2019-05-10
Release date:2019-05-29
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling.
Nat.Struct.Mol.Biol., 26, 2019
6JYL
DownloadVisualize
BU of 6jyl by Molmil
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (167-MER), ...
Authors:Yan, L.J, Wu, H, Li, X.M, Gao, N, Chen, Z.C.
Deposit date:2019-04-26
Release date:2019-05-29
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling.
Nat.Struct.Mol.Biol., 26, 2019
7UNK
DownloadVisualize
BU of 7unk by Molmil
Structure of Importin-4 bound to the H3-H4-ASF1 histone-histone chaperone complex
Descriptor: Histone H3, Histone H4, Histone chaperone, ...
Authors:Bernardes, N.E, Chook, Y.M, Fung, H.Y.J, Chen, Z, Li, Y.
Deposit date:2022-04-11
Release date:2022-09-21
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of IMPORTIN-4 bound to the H3-H4-ASF1 histone-histone chaperone complex.
Proc.Natl.Acad.Sci.USA, 119, 2022
7YD0
DownloadVisualize
BU of 7yd0 by Molmil
SARS-CoV-2 Omicron 1-RBD up spike trimer complexed with two XG005 Fab
Descriptor: Spike glycoprotein, XG005-VH, XG005-VL
Authors:Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2022-07-02
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:SARS-CoV-2 Omicron 1-RBD up spike trimer complexed with two XG005 Fab
To be Published
7YCZ
DownloadVisualize
BU of 7ycz by Molmil
SARS-CoV-2 Omicron 2-RBD up Spike trimer complexed with three XG005 molecules
Descriptor: Spike glycoprotein, XG005-VH, XG005-VL
Authors:Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2022-07-02
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:SARS-CoV-2 Omicron 2-RBD up Spike trimer complexed with three XG005 molecules
To be Published
7YCY
DownloadVisualize
BU of 7ycy by Molmil
SARS-CoV-2 Omicron 1-RBD up Spike trimer complexed with three XG005 molecules
Descriptor: Spike glycoprotein, XG005-VH, XG005-VL
Authors:Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2022-07-02
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:OS-XG005
To be Published
7EB2
DownloadVisualize
BU of 7eb2 by Molmil
Cryo-EM structure of human GABA(B) receptor-Gi protein complex
Descriptor: (3S)-5,7-ditert-butyl-3-oxidanyl-3-(trifluoromethyl)-1-benzofuran-2-one, Gamma-aminobutyric acid type B receptor subunit 1, Gamma-aminobutyric acid type B receptor subunit 2, ...
Authors:Shen, C, Mao, C, Xu, C, Jin, N, Zhang, H, Shen, D, Shen, Q, Wang, X, Hou, T, Rondard, P, Chen, Z, Pin, J, Zhang, Y, Liu, J.
Deposit date:2021-03-08
Release date:2021-05-05
Last modified:2021-07-07
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of GABA B receptor-G i protein coupling.
Nature, 594, 2021
6MDX
DownloadVisualize
BU of 6mdx by Molmil
Mechanism of protease dependent DPC repair
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, DNA (5'-D(P*CP*C)-3'), ...
Authors:Li, F, Raczynska, J, Chen, Z, Yu, H.
Deposit date:2018-09-05
Release date:2019-04-10
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan.
Cell Rep, 26, 2019
8I4E
DownloadVisualize
BU of 8i4e by Molmil
Omicron spike variant XBB with Bn03
Descriptor: Bn03, Spike glycoprotein
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
8I4G
DownloadVisualize
BU of 8i4g by Molmil
Omicron spike variant BQ.1.1 with n3130v-Fc
Descriptor: Spike glycoprotein, n3130v-Fc
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
8I4F
DownloadVisualize
BU of 8i4f by Molmil
Omicron spike variant XBB with n3130v-Fc
Descriptor: Spike glycoprotein, n3130v-Fc
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
6IY3
DownloadVisualize
BU of 6iy3 by Molmil
Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (147-MER), Histone H2A, ...
Authors:Li, M, Xia, X, Liu, X, Li, X, Chen, Z.
Deposit date:2018-12-12
Release date:2019-04-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Mechanism of DNA translocation underlying chromatin remodelling by Snf2.
Nature, 567, 2019
6IY2
DownloadVisualize
BU of 6iy2 by Molmil
Structure of Snf2-MMTV-A nucleosome complex at shl2 in ADP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (147-MER), DNA (167-MER), ...
Authors:Li, M, Xia, X, Liu, X, Li, X, Chen, Z.
Deposit date:2018-12-12
Release date:2019-04-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Mechanism of DNA translocation underlying chromatin remodelling by Snf2.
Nature, 567, 2019
6AOG
DownloadVisualize
BU of 6aog by Molmil
Crystal structure of Toxoplasma gondii TS-DHFR complexed with NADPH, dUMP, PDDF, and 5-(4-chlorophenyl)-6-ethylpyrimidine-2,4-diamine (pyrimethamine)
Descriptor: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE, ...
Authors:Thomas, S.B, Li, Y, Chen, Z, Lu, H.
Deposit date:2017-08-16
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Identification of selective, brain penetrant Toxoplasma gondii dihydrofolate reductase inhibitors for the treatment of toxoplasmosis
To Be Published
8I4H
DownloadVisualize
BU of 8i4h by Molmil
Omicron spike variant BA.1 with Bn03
Descriptor: Bn03, Spike glycoprotein
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
6AOI
DownloadVisualize
BU of 6aoi by Molmil
Crystal structure of Toxoplasma gondii TS-DHFR complexed with NADPH, dUMP, PDDF, and 5-(4-phenylpiperazin-1-yl)-6-propylpyrimidine-2,4-diamine (TRC-2528)
Descriptor: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 5-(4-phenylpiperazin-1-yl)-6-propylpyrimidine-2,4-diamine, ...
Authors:Thomas, S.B, Li, Y, Chen, Z, Lu, H.
Deposit date:2017-08-16
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Identification of selective, brain penetrant Toxoplasma gondii dihydrofolate reductase inhibitors for the treatment of toxoplasmosis
To Be Published
6AOH
DownloadVisualize
BU of 6aoh by Molmil
Crystal structure of Toxoplasma gondii TS-DHFR complexed with NADPH, dUMP, PDDF, and 5-(4-(3-(2-methoxypyrimidin-5-yl)phenyl)piperazin-1-yl)pyrimidine-2,4-diamine (TRC-2533)
Descriptor: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine, ...
Authors:Thomas, S.B, Li, Y, Chen, Z, Lu, H.
Deposit date:2017-08-16
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Identification of selective, brain penetrant Toxoplasma gondii dihydrofolate reductase inhibitors for the treatment of toxoplasmosis
To Be Published
7YD1
DownloadVisualize
BU of 7yd1 by Molmil
Local refinement of SARS-CoV-2 Omicron S trimer complexed with XG005
Descriptor: Spike protein S1, XG005-VH, XG005-VL
Authors:Zhan, W.Q, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2022-07-02
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:OS-XG005
To be Published
4QQN
DownloadVisualize
BU of 4qqn by Molmil
Protein arginine methyltransferase 3 in complex with compound MTV044246
Descriptor: 1-{2-[1-(aminomethyl)cyclohexyl]ethyl}-3-isoquinolin-6-ylurea, CHLORIDE ION, GLYCEROL, ...
Authors:Dong, A, Dobrovetsky, E, Tempel, W, He, H, Zhao, K, Smil, D, Landon, M, Luo, X, Chen, Z, Dai, M, Yu, Z, Lin, Y, Zhang, H, Zhao, K, Schapira, M, Brown, P.J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-06-27
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Discovery of Potent and Selective Allosteric Inhibitors of Protein Arginine Methyltransferase 3 (PRMT3).
J. Med. Chem., 61, 2018
2R9E
DownloadVisualize
BU of 2r9e by Molmil
The structure of the binary complex of citryl dethia COA and citrate synthase from the thermophilic archaeonthermoplasma acidophilum
Descriptor: Citrate synthase, s-citryldethia Coenzyme A
Authors:Lehmann, C, Chen, Z.
Deposit date:2007-09-12
Release date:2008-09-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Snapshots of Intermediates in the Condensation Reaction Catalyzed by Citrate Synthase
To be Published
8PNM
DownloadVisualize
BU of 8pnm by Molmil
Structure of human KCTD15 BTB domain mutant G88D crystal form 2
Descriptor: BTB/POZ domain-containing protein KCTD15
Authors:Cruz Walma, D.A, Cros, J, Bradshaw, W, Richardson, W, Chen, Z, Chalk, R, Wilkie, A, Bullock, A.N.
Deposit date:2023-06-30
Release date:2024-03-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:BTB domain mutations perturbing KCTD15 oligomerisation cause a distinctive frontonasal dysplasia syndrome.
J Med Genet, 61, 2024
5E7R
DownloadVisualize
BU of 5e7r by Molmil
Crystal structure of TL10-81 bound to TAK1-TAB1
Descriptor: 2-chloro-N-{2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)oxy]phenyl}acetamide, TAK1 kinase - TAB1 chimera fusion protein
Authors:Gurbani, D, Hunter, J.C, Tan, L, Chen, Z, Westover, K.D.
Deposit date:2015-10-13
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structure-guided development of covalent TAK1 inhibitors.
Bioorg. Med. Chem., 25, 2017

220760

PDB entries from 2024-06-05

PDB statisticsPDBj update infoContact PDBjnumon