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PDB: 107 results

7PJX
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BU of 7pjx by Molmil
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJY
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BU of 7pjy by Molmil
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJZ
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BU of 7pjz by Molmil
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJW
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BU of 7pjw by Molmil
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJU
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BU of 7pju by Molmil
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-11-17
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJS
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BU of 7pjs by Molmil
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement
Nat Commun, 12, 2021
7PJV
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BU of 7pjv by Molmil
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
7PJT
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BU of 7pjt by Molmil
Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N.
Deposit date:2021-08-24
Release date:2021-10-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structural mechanism of GTPase-powered ribosome-tRNA movement.
Nat Commun, 12, 2021
4PXK
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BU of 4pxk by Molmil
Crystal structure of Haloarcula marismortui bacteriorhodopsin I D94N mutant
Descriptor: Bacteriorhodopsin, EICOSANE, RETINAL, ...
Authors:Shevchenko, V, Gushchin, I, Polovinkin, V, Gordeliy, V.
Deposit date:2014-03-24
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Escherichia coli-Expressed Haloarcula marismortui Bacteriorhodopsin I in the Trimeric Form.
Plos One, 9, 2014
2BSG
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BU of 2bsg by Molmil
The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4
Descriptor: FIBRITIN
Authors:Kostyuchenko, V.A, Chipman, P.R, Leiman, P.G, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2005-05-20
Release date:2005-09-21
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (15 Å)
Cite:The Tail Structure of Bacteriophage T4 and its Mechanism of Contraction.
Nat.Struct.Mol.Biol., 12, 2005
1ZKU
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BU of 1zku by Molmil
Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Baseplate structural protein Gp9
Authors:Kostyuchenko, V.A.
Deposit date:2005-05-04
Release date:2005-08-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (15 Å)
Cite:The tail structure of bacteriophage T4 and its mechanism of contraction.
Nat.Struct.Mol.Biol., 12, 2005
1QEX
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BU of 1qex by Molmil
BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PROTEIN (BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9))
Authors:Kostyuchenko, V.A, Navruzbekov, G.A, Kurochkina, L.P, Strelkov, S.V, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:1999-03-30
Release date:1999-10-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of bacteriophage T4 gene product 9: the trigger for tail contraction.
Structure Fold.Des., 7, 1999
1PDP
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BU of 1pdp by Molmil
Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction
Descriptor: Baseplate structural protein Gp9
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1S2E
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BU of 1s2e by Molmil
BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR, ALTERNATIVE FIT OF THE FIRST 19 RESIDUES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Baseplate structural protein Gp9
Authors:Kostyuchenko, V.A, Navruzbekov, G.A, Kurochkina, L.P, Strelkov, S.V, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2004-01-08
Release date:2004-01-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Structure of Bacteriophage T4 Gene Product 9: The Trigger for Tail Contraction
Structure Fold.Des., 7, 1999
1PDM
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BU of 1pdm by Molmil
Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp8
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDL
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BU of 1pdl by Molmil
Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Tail-associated lysozyme
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDJ
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BU of 1pdj by Molmil
Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp27
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDF
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BU of 1pdf by Molmil
Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex
Descriptor: Baseplate structural protein Gp11
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDI
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BU of 1pdi by Molmil
Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate
Descriptor: Short tail fiber protein
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
4B03
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BU of 4b03 by Molmil
6A Electron cryomicroscopy structure of immature Dengue virus serotype 1
Descriptor: DENGUE VIRUS 1 E PROTEIN, DENGUE VIRUS 1 PRM PROTEIN
Authors:Kostyuchenko, V.A, Zhang, Q, Tan, L.C, Ng, T.S, Lok, S.M.
Deposit date:2012-06-28
Release date:2013-06-05
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.
J.Virol., 87, 2013
4CCT
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BU of 4cct by Molmil
Dengue 1 cryo-EM reconstruction
Descriptor: DENGUE VIRUS 1 E PROTEIN, DENGUE VIRUS 1 M PROTEIN
Authors:Kostyuchenko, V.A, Zhang, Q, Tan, J.L, Ng, T.S, Lok, S.M.
Deposit date:2013-10-28
Release date:2013-11-06
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.
J.Virol., 87, 2013
2YEW
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BU of 2yew by Molmil
Modeling Barmah Forest virus structural proteins
Descriptor: CAPSID PROTEIN, E1 ENVELOPE GLYCOPROTEIN, E2 ENVELOPE GLYCOPROTEIN
Authors:Kostyuchenko, V.A, Jakana, J, Liu, X, Haddow, A.D, Aung, M, Weaver, S.C, Chiu, W, Lok, S.M.
Deposit date:2011-03-31
Release date:2012-04-18
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (5 Å)
Cite:The Structure of Barmah Forest Virus as Revealed by Cryo-Electron Microscopy at a 6-Angstrom Resolution Has Detailed Transmembrane Protein Architecture and Interactions.
J.Virol., 85, 2011
4CBF
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BU of 4cbf by Molmil
Near-atomic resolution cryo-EM structure of Dengue serotype 4 virus
Descriptor: ENVELOPE PROTEIN E, M PROTEIN
Authors:Kostyuchenko, V.A, Chew, P.L, Ng, T.S, Lok, S.M.
Deposit date:2013-10-14
Release date:2013-11-06
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Near-Atomic Resolution Cryo-Electron Microscopic Structure of Dengue Serotype 4 Virus.
J.Virol., 88, 2014
5IZ7
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BU of 5iz7 by Molmil
Cryo-EM structure of thermally stable Zika virus strain H/PF/2013
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, structural protein E, structural protein M
Authors:Kostyuchenko, V.A, Zhang, S, Fibriansah, G, Lok, S.M.
Deposit date:2016-03-25
Release date:2016-05-25
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the thermally stable Zika virus
Nature, 533, 2016
4V9D
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BU of 4v9d by Molmil
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Dunkle, J.A, Wang, L, Feldman, M.B, Pulk, A, Chen, V.B, Kapral, G.J, Noeske, J, Richardson, J.S, Blanchard, S.C, Cate, J.H.D.
Deposit date:2012-07-31
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.
Science, 332, 2011

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