Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 487 results

3HLI
DownloadVisualize
BU of 3hli by Molmil
diisopropyl fluorophosphatase (DFPase), active site mutants
Descriptor: CALCIUM ION, Diisopropyl-fluorophosphatase
Authors:Chen, J.C.-H, Blum, M.-M.
Deposit date:2009-05-27
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Reversed enantioselectivity of diisopropyl fluorophosphatase against organophosphorus nerve agents by rational design
J.Am.Chem.Soc., 131, 2009
3HLH
DownloadVisualize
BU of 3hlh by Molmil
Diisopropyl fluorophosphatase (DFPase), active site mutants
Descriptor: CALCIUM ION, Diisopropyl-fluorophosphatase
Authors:Chen, J.C.-H, Blum, M.-M.
Deposit date:2009-05-27
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reversed enantioselectivity of diisopropyl fluorophosphatase against organophosphorus nerve agents by rational design
J.Am.Chem.Soc., 131, 2009
7Y18
DownloadVisualize
BU of 7y18 by Molmil
Crystal structure of ribosomal ITS2 pre-rRNA processing complex from Saccharomyces cerevisiae
Descriptor: Polynucleotide 5'-hydroxyl-kinase GRC3, Protein LAS1
Authors:Chen, J, Liu, L.
Deposit date:2022-06-07
Release date:2023-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.69 Å)
Cite:Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery.
Elife, 12, 2024
7Y17
DownloadVisualize
BU of 7y17 by Molmil
Crystal structure of ribosomal ITS2 pre-rRNA processing complex from Cyberlindnera jadinii
Descriptor: LAS1 protein, Polynucleotide 5'-hydroxyl-kinase GRC3
Authors:Chen, J, Liu, L.
Deposit date:2022-06-07
Release date:2023-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.39 Å)
Cite:Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery.
Elife, 12, 2024
1Q1E
DownloadVisualize
BU of 1q1e by Molmil
The ATPase component of E. coli maltose transporter (MalK) in the nucleotide-free form
Descriptor: Maltose/maltodextrin transport ATP-binding protein malK
Authors:Chen, J, Lu, G, Lin, J, Davidson, A.L, Quiocho, F.A.
Deposit date:2003-07-19
Release date:2003-09-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A tweezers-like motion of the ATP-binding cassette dimer in an ABC transport cycle
Mol.Cell, 12, 2003
1Q1B
DownloadVisualize
BU of 1q1b by Molmil
Crystal structure of E. coli MalK in the nucleotide-free form
Descriptor: Maltose/maltodextrin transport ATP-binding protein malK
Authors:Chen, J, Lu, G, Lin, J, Davidson, A.L, Quiocho, F.A.
Deposit date:2003-07-18
Release date:2003-09-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A tweezer-like motion of the ATP-binding cassette dimer in an ABC transport cycle
Mol.Cell, 12, 2003
8FEE
DownloadVisualize
BU of 8fee by Molmil
Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
Descriptor: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
Authors:Chen, J, Bhabha, G, Ekiert, D.C.
Deposit date:2022-12-06
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8FED
DownloadVisualize
BU of 8fed by Molmil
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
Descriptor: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
Authors:Chen, J, Bhabha, G, Ekiert, D.C.
Deposit date:2022-12-06
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8FEF
DownloadVisualize
BU of 8fef by Molmil
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Descriptor: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
Authors:Chen, J, Bhabha, G, Ekiert, D.C.
Deposit date:2022-12-06
Release date:2023-02-22
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8IRQ
DownloadVisualize
BU of 8irq by Molmil
Larimichthys crocea IFNd
Descriptor: Interferon d
Authors:Chen, J.J.
Deposit date:2023-03-19
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of large yellow croaker IFNd at 1.49 Angstrom resolution.
To Be Published
8J5Y
DownloadVisualize
BU of 8j5y by Molmil
Structural and mechanistic insight into ribosomal ITS2 RNA processing by nuclease-kinase machinery
Descriptor: LAS1 isoform 1, Polynucleotide 5'-hydroxyl-kinase GRC3
Authors:Chen, J, Chen, H, Li, S, Lin, X, Hu, R, Zhang, K, Liu, L.
Deposit date:2023-04-24
Release date:2024-01-17
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery.
Elife, 12, 2024
8J60
DownloadVisualize
BU of 8j60 by Molmil
Structural and mechanistic insight into ribosomal ITS2 RNA processing by nuclease-kinase machinery
Descriptor: LAS1 protein, Polynucleotide 5'-hydroxyl-kinase GRC3
Authors:Chen, J, Chen, H, Li, S, Lin, X, Hu, R, Zhang, K, Liu, L.
Deposit date:2023-04-24
Release date:2024-01-17
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery.
Elife, 12, 2024
2GVU
DownloadVisualize
BU of 2gvu by Molmil
Crystal structure of diisopropyl fluorophosphatase (DFPase), mutant D229N / N120D
Descriptor: CALCIUM ION, Phosphotriesterase
Authors:Chen, J.C.H, Blum, M.M.
Deposit date:2006-05-03
Release date:2006-09-19
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of a designed substrate analogue to diisopropyl fluorophosphatase: implications for the phosphotriesterase mechanism.
J.Am.Chem.Soc., 128, 2006
2GVV
DownloadVisualize
BU of 2gvv by Molmil
Structure of diisopropyl fluorophosphatase (DFPase) in complex with dicyclopentylphosphoroamidate (DcPPA)
Descriptor: CALCIUM ION, DICYCLOPENTYL PHOSPHORAMIDATE, Phosphotriesterase
Authors:Chen, J.C.H, Blum, M.M.
Deposit date:2006-05-03
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Binding of a designed substrate analogue to diisopropyl fluorophosphatase: implications for the phosphotriesterase mechanism.
J.Am.Chem.Soc., 128, 2006
2GVW
DownloadVisualize
BU of 2gvw by Molmil
Structure of diisopropyl fluorophosphatase (DFPase) holoenzyme (RT)
Descriptor: CALCIUM ION, Phosphotriesterase
Authors:Chen, J.C.H, Blum, M.M.
Deposit date:2006-05-03
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Binding of a designed substrate analogue to diisopropyl fluorophosphatase: implications for the phosphotriesterase mechanism.
J.Am.Chem.Soc., 128, 2006
7DWQ
DownloadVisualize
BU of 7dwq by Molmil
Photosystem I from a chlorophyll d-containing cyanobacterium Acaryochloris marina
Descriptor: (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Chen, J.H, Zhang, X, Shen, J.R.
Deposit date:2021-01-17
Release date:2021-06-02
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A unique photosystem I reaction center from a chlorophyll d-containing cyanobacterium Acaryochloris marina.
J Integr Plant Biol, 63, 2021
3KLA
DownloadVisualize
BU of 3kla by Molmil
Ca2+ release from the endoplasmic reticulum of NY-ESO-1 specific T cells is modulated by the affinity of T cell receptor and by the use of the CD8 co-receptor
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-2 alpha chain, ...
Authors:Chen, J.L, Morgan, A.J, Stewart-Jones, G, Shepherd, D, Bossi, G, Wooldridge, L.
Deposit date:2009-11-07
Release date:2010-02-16
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Ca2+ Release from the Endoplasmic Reticulum of NY-ESO-1-Specific T Cells Is Modulated by the Affinity of TCR and by the Use of the CD8 Coreceptor.
J.Immunol., 184, 2010
7KRO
DownloadVisualize
BU of 7kro by Molmil
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7KRN
DownloadVisualize
BU of 7krn by Molmil
Structure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7KRP
DownloadVisualize
BU of 7krp by Molmil
Structure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - BTC (local refinement)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHAPSO, MAGNESIUM ION, ...
Authors:Chen, J, Malone, B, Campbell, E.A, Darst, S.A.
Deposit date:2020-11-20
Release date:2021-04-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7Y16
DownloadVisualize
BU of 7y16 by Molmil
Crystal structure of rRNA-processing protein Las1
Descriptor: LAS1 protein
Authors:Chen, J, Liu, L.
Deposit date:2022-06-07
Release date:2023-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and mechanistic insights into ribosomal ITS2 RNA processing by nuclease-kinase machinery.
Elife, 12, 2024
3NKB
DownloadVisualize
BU of 3nkb by Molmil
A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage
Descriptor: DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3'), MAGNESIUM ION, The hepatitis delta virus ribozyme
Authors:Chen, J.-H, Yajima, R, Chadalavada, D.M, Chase, E, Bevilacqua, P.C, Golden, B.L.
Deposit date:2010-06-18
Release date:2010-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.916 Å)
Cite:A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.
Biochemistry, 49, 2010
6IEG
DownloadVisualize
BU of 6ieg by Molmil
Crystal structure of human MTR4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Exosome RNA helicase MTR4, MAGNESIUM ION
Authors:Chen, J.Y, Yun, C.H.
Deposit date:2018-09-14
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:NRDE2 negatively regulates exosome functions by inhibiting MTR4 recruitment and exosome interaction.
Genes Dev., 33, 2019
6IEH
DownloadVisualize
BU of 6ieh by Molmil
Crystal structures of the hMTR4-NRDE2 complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Exosome RNA helicase MTR4, ...
Authors:Chen, J.Y, Yun, C.H.
Deposit date:2018-09-14
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.892 Å)
Cite:NRDE2 negatively regulates exosome functions by inhibiting MTR4 recruitment and exosome interaction.
Genes Dev., 33, 2019
2HSL
DownloadVisualize
BU of 2hsl by Molmil
NMR structure of 13mer duplex DNA containing an abasic site, averaged structure (alpha anomer)
Descriptor: 5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*CP*GP*GP*G)-3', 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
Authors:Chen, J, Dupradeau, F.Y, Case, D.A, Turner, C.J, Stubbe, J.
Deposit date:2006-07-22
Release date:2007-05-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Biochemistry, 46, 2007

220760

건을2024-06-05부터공개중

PDB statisticsPDBj update infoContact PDBjnumon