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PDB: 609 results

6VI4
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Nanobody-Enabled Monitoring of Kappa Opioid Receptor States
Descriptor: (3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide, CHOLESTEROL, Kappa opioid receptor, ...
Authors:Che, T, Roth, B.L.
Deposit date:2020-01-11
Release date:2020-03-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Nanobody-enabled monitoring of kappa opioid receptor states.
Nat Commun, 11, 2020
6B73
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Crystal Structure of a nanobody-stabilized active state of the kappa-opioid receptor
Descriptor: CHOLESTEROL, N-[(5alpha,6beta)-17-(cyclopropylmethyl)-3-hydroxy-7,8-didehydro-4,5-epoxymorphinan-6-yl]-3-iodobenzamide, Nanobody, ...
Authors:Che, T, Majumdar, S, Zaidi, S.A, Kormos, C, McCorvy, J.D, Wang, S, Mosier, P.D, Uprety, R, Vardy, E, Krumm, B.E, Han, G.W, Lee, M.Y, Pardon, E, Steyaert, J, Huang, X.P, Strachan, R.T, Tribo, A.R, Pasternak, G.W, Carroll, I.F, Stevens, R.C, Cherezov, V, Katritch, V, Wacker, D, Roth, B.L.
Deposit date:2017-10-03
Release date:2018-01-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the Nanobody-Stabilized Active State of the Kappa Opioid Receptor.
Cell, 172, 2018
8IBH
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BU of 8ibh by Molmil
Cep57 C-terminal domain
Descriptor: Centrosomal protein of 57 kDa
Authors:Chen, T, Yeh, H.-W, Cheng, H.-C.
Deposit date:2023-02-10
Release date:2024-02-14
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Cep57 regulates human centrosomes through multivalent interactions.
Proc.Natl.Acad.Sci.USA, 121, 2024
4DX5
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BU of 4dx5 by Molmil
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
Descriptor: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, Acriflavine resistance protein B, DARPIN, ...
Authors:Eicher, T, Cha, H, Seeger, M.A, Brandstaetter, L, El-Delik, J, Bohnert, J.A, Kern, W.V, Verrey, F, Gruetter, M.G, Diederichs, K, Pos, K.M.
Deposit date:2012-02-27
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop.
Proc.Natl.Acad.Sci.USA, 109, 2012
8AS9
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BU of 8as9 by Molmil
Crystal structure of the talin-KANK1 complex
Descriptor: B-cell lymphoma 6 protein, GLYCEROL, KN-motif NCoR1 BBD fusion,Nuclear receptor corepressor 1, ...
Authors:Zacharchenko, T.
Deposit date:2022-08-18
Release date:2023-06-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The structural basis of the talin-KANK1 interaction that coordinates the actin and microtubule cytoskeletons at focal adhesions.
Open Biology, 13, 2023
6TWN
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BU of 6twn by Molmil
Crystal structure of Talin1 R7R8 in complex with CDK1 (206-223)
Descriptor: CHLORIDE ION, Cyclin-dependent kinase 1, GLYCEROL, ...
Authors:Zacharchenko, T, Muench, S.P, Goult, B.T.
Deposit date:2020-01-13
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Talin mechanosensitivity is modulated by a direct interaction with cyclin-dependent kinase-1.
J.Biol.Chem., 297, 2021
1I4N
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BU of 1i4n by Molmil
CRYSTAL STRUCTURE OF INDOLEGLYCEROL PHOSPHATE SYNTHASE FROM THERMOTOGA MARITIMA
Descriptor: INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE, SULFATE ION
Authors:Knoechel, T, Pappenberger, A, Jansonius, J.N, Kirschner, K.
Deposit date:2001-02-22
Release date:2002-03-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of indoleglycerol-phosphate synthase from Thermotoga maritima. Kinetic stabilization by salt bridges.
J.Biol.Chem., 277, 2002
8OOI
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BU of 8ooi by Molmil
Full composite cryo-EM map of p97/VCP in ADP.Pi state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Cheng, T.C, Sakata, E, Schuetz, A.K.
Deposit date:2023-04-05
Release date:2024-01-31
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Characterizing ATP processing by the AAA+ protein p97 at the atomic level.
Nat.Chem., 16, 2024
8J9B
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BU of 8j9b by Molmil
LnaB-actin binary complex
Descriptor: Actin gamma 1, Type IV secretion protein Dot
Authors:Chen, T.T, Ouyang, S.Y.
Deposit date:2023-05-03
Release date:2024-05-08
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Structure of Legionella effector LnaB-actin binary complex
To Be Published
6CZ1
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BU of 6cz1 by Molmil
Crystal structure of ATPase domain of Human GRP78 bound to Ver155008
Descriptor: 4-[[(2R,3S,4R,5R)-5-[6-amino-8-[(3,4-dichlorophenyl)methylamino]purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitrile, Endoplasmic reticulum chaperone BiP, MAGNESIUM ION
Authors:Antoshchenko, T, Chen, Y, Hughes, S, Park, H.
Deposit date:2018-04-07
Release date:2019-04-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystallographic selection of adenosine analogs that fit the mold of the active site of human GRP78 and beyond
To be Published
7C0Q
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BU of 7c0q by Molmil
a Legionella pneumophila effector Lpg2505
Descriptor: GLYCEROL, effector Lpg2505
Authors:Chen, T.T, Han, A.D, Luo, Z.Q, McCloskey, A, Perri, K.
Deposit date:2020-05-01
Release date:2021-02-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The metaeffector MesI regulates the activity of the Legionella effector SidI through direct protein-protein interactions.
Microbes Infect., 23, 2021
8HCY
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BU of 8hcy by Molmil
Legionella glycosyltransferase
Descriptor: Dot/Icm secretion system substrate
Authors:Chen, T.T, Ouyang, S.Y.
Deposit date:2022-11-03
Release date:2023-11-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural Basis for the Action Mechanism of Legionella Glycosyltransferase.
Small Struct, 2023
6M14
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BU of 6m14 by Molmil
Crystal Structure of the BARD1 BRCT Mutant
Descriptor: BRCA1-associated RING domain protein 1, SULFATE ION
Authors:Chen, T, Huang, W.T.
Deposit date:2020-02-24
Release date:2021-02-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88001835 Å)
Cite:BARD1 is an ATPase activating protein for OLA1.
Biochim Biophys Acta Gen Subj, 1866, 2022
8BNQ
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BU of 8bnq by Molmil
Crystal structure of the FnIII-tandem A84-A86 from the A-band of titin
Descriptor: 1,2-ETHANEDIOL, Titin
Authors:Zacharchenko, T, Fleming, J.R, Mayans, O.
Deposit date:2022-11-14
Release date:2023-04-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into titin's A-band.
J.Muscle Res.Cell.Motil., 44, 2023
4WJ8
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BU of 4wj8 by Molmil
Human Pyruvate Kinase M2 Mutant C424A
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, MAGNESIUM ION, ...
Authors:Mitchell, T, Yuan, M, McNae, I, Morgan, H, Walkinshaw, M.D.
Deposit date:2014-09-29
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Human Pyruvate Kinase M2 Mutant C424A
To Be Published
6GVB
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BU of 6gvb by Molmil
Crystal structure of Cutibacterium acnes exo-beta-1,4-mannosidase
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, exo-beta-1,4-mannosidase
Authors:Reichenbach, T, Divne, C.
Deposit date:2018-06-20
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and biochemical characterization of the Cutibacterium acnes exo-beta-1,4-mannosidase that targets the N-glycan core of host glycoproteins.
Plos One, 13, 2018
7XQL
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BU of 7xql by Molmil
complex structure of LegA15 with GNP
Descriptor: Ankyrin repeat-containing protein, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Chen, T.T, Lin, Y.L.
Deposit date:2022-05-07
Release date:2023-05-17
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.272 Å)
Cite:Atypical Legionella GTPase effector hijacks host vesicular transport factor p115 to regulate host lipid droplet.
Sci Adv, 8, 2022
3UQP
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BU of 3uqp by Molmil
Crystal structure of Bace1 with its inhibitor
Descriptor: Beta-secretase 1, METHYL (2R)-1-[(6S,9S,12S,13S,17S,20S,23R)-9-(3-AMINO-3-OXOPROPYL)-12,23-DIBENZYL-13-HYDROXY-2,2,8,20,22-PENTAMETHYL-17-(2-METHYLPROPYL)-4,7,10,15,18,21,24-HEPTAOXO-6-(PROPAN-2-YL)-3-OXA-5,8,11,16,19,22-HEXAAZATETRACOSAN-24-YL]PYRROLIDINE-2-CARBOXYLATE, SULFATE ION
Authors:Chen, T.T, Chen, W.Y, Li, L, Xu, Y.C.
Deposit date:2011-11-21
Release date:2012-11-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Cyanobacterial Peptides as a Prototype for the Design of Potent beta-Secretase Inhibitors and the Development of Selective Chemical Probes for Other Aspartic Proteases
J.Med.Chem., 55, 2012
4XT2
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BU of 4xt2 by Molmil
Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a tetrazole-containing antagonist
Descriptor: (5S,7R)-5,7-bis(3-bromophenyl)-4,5,6,7-tetrahydrotetrazolo[1,5-a]pyrimidine, Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1
Authors:Scheuermann, T.H, Gardner, K.H.
Deposit date:2015-01-22
Release date:2015-12-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Isoform-Selective and Stereoselective Inhibition of Hypoxia Inducible Factor-2.
J.Med.Chem., 58, 2015
3UQW
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BU of 3uqw by Molmil
Crystal structure of BACE1 with its inhibitor
Descriptor: Beta-secretase 1, SULFATE ION, ethyl 1-{(2S,3S)-3-[(3-{[(1R)-1-(4-fluorophenyl)ethyl]carbamoyl}-5-[methyl(methylsulfonyl)amino]benzoyl)amino]-2-hydroxy-4-phenylbutyl}-1H-pyrazole-4-carboxylate
Authors:Chen, T.T, Chen, W.Y, Xu, Y.C.
Deposit date:2011-11-21
Release date:2012-11-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Flexibility of the Flap in the Active Site of BACE1 as Revealed by Crystal Structures and MD simulations
to be published
3UQU
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BU of 3uqu by Molmil
Crystal structure of BACE1 with its inhibitor
Descriptor: Beta-secretase 1, CHLORIDE ION, N-[(1R)-1-(4-fluorophenyl)ethyl]-N'-[(2S,3S)-3-hydroxy-1-phenyl-4-(1H-pyrazol-1-yl)butan-2-yl]-5-[methyl(methylsulfonyl)amino]benzene-1,3-dicarboxamide, ...
Authors:Chen, T.T, Chen, W.Y, Xu, Y.C.
Deposit date:2011-11-21
Release date:2012-11-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Flexibility of the Flap in the Active Site of BACE1 as Revealed by Crystal Structures and MD simulations
to be published
3UQR
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BU of 3uqr by Molmil
Crystal structure of BACE1 with its inhibitor
Descriptor: Beta-secretase 1, METHYL (2S)-1-[(2R,5S,8S,12S,13S)-2,13-DIBENZYL-12-HYDROXY-3,5-DIMETHYL-15-(3-[METHYL(METHYLSULFONYL)AMINO]-5-{[(1R)-1-PHENYLETHYL]CARBAMOYL}PHENYL)-8-(2-METHYLPROPYL)-4,7,10,15-TETRAOXO-3,6,9,14-TETRAAZAPENTADECAN-1-OYL]PYRROLIDINE-2-CARBOXYLATE
Authors:Chen, T.T, Chen, W.Y, Li, L, Xu, Y.C.
Deposit date:2011-11-21
Release date:2012-11-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.056 Å)
Cite:Cyanobacterial Peptides as a Prototype for the Design of Potent beta-Secretase Inhibitors and the Development of Selective Chemical Probes for Other Aspartic Proteases
J.Med.Chem., 55, 2012
3UQX
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BU of 3uqx by Molmil
Crystal structure of BACE1 with its inhibitor
Descriptor: Beta-secretase 1, CHLORIDE ION, N-[(1R)-1-(4-fluorophenyl)ethyl]-N'-[(2S,3S)-3-hydroxy-4-{4-[(1S)-1-hydroxyethyl]-1H-1,2,3-triazol-1-yl}-1-phenylbutan-2-yl]-5-[methyl(methylsulfonyl)amino]benzene-1,3-dicarboxamide, ...
Authors:Chen, T.T, Chen, W.Y, Xu, Y.C.
Deposit date:2011-11-21
Release date:2012-11-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Flexibility of the Flap in the Active Site of BACE1 as Revealed by Crystal Structures and MD simulations
to be published
7WX6
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BU of 7wx6 by Molmil
A Legionella acetyltransferase VipF
Descriptor: CHLORAMPHENICOL, COENZYME A, N-acetyltransferase
Authors:Chen, T.T, Lin, Y.L, Chen, Z, Han, A.D.
Deposit date:2022-02-14
Release date:2022-09-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.273 Å)
Cite:Structural basis for the acetylation mechanism of the Legionella effector VipF.
Acta Crystallogr D Struct Biol, 78, 2022
4OEX
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BU of 4oex by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 6-ethyl-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Ren, J, Xu, Y.C.
Deposit date:2014-01-14
Release date:2015-04-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Thermodynamic and structural characterization of halogen bonding in protein-ligand interactions: a case study of PDE5 and its inhibitors.
J.Med.Chem., 57, 2014

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