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PDB: 1059 results

7A4A
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Envelope glycprotein of endogenous retrovirus Y032 (Atlas virus) from the human hookworm Ancylostoma ceylanicum
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Integrase catalytic domain-containing protein
Authors:Mata, C.P, Merchant, M, Modis, Y.
Deposit date:2020-08-19
Release date:2021-09-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:A bioactive phlebovirus-like envelope protein in a hookworm endogenous virus.
Sci Adv, 8, 2022
5AQS
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BU of 5aqs by Molmil
Fragment-based screening of HSP70 sheds light on the functional role of ATP-binding site residues
Descriptor: BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1, GLYCEROL, HEAT SHOCK COGNATE 71 KDA PROTEIN, ...
Authors:Jones, A.M, Westwood, I.M, Osborne, J.D, Matthews, T.P, Cheeseman, M.D, Rowlands, M.G, Jeganathan, F, Burke, R, Lee, D, Kadi, N, Liu, M, Richards, M, McAndrew, C, Yahya, N, Dobson, S.E, Jones, K, Workman, P, Collins, I, van Montfort, R.L.M.
Deposit date:2015-09-22
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:A fragment-based approach applied to a highly flexible target: Insights and challenges towards the inhibition of HSP70 isoforms.
Sci Rep, 6, 2016
7C66
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Crystal structure of beta-glycosides-binding protein of ABC transporter in a closed state bound to cellobiose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
6SM2
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BU of 6sm2 by Molmil
Mutant immunoglobulin light chain causing amyloidosis (Pat-1)
Descriptor: Pat-1
Authors:Kazman, P, Vielberg, M.-T, Cendales, M.D.P, Hunziger, L, Weber, B, Hegenbart, U, Zacharias, M, Koehler, R, Schoenland, S, Groll, M, Buchner, J.
Deposit date:2019-08-21
Release date:2020-03-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fatal amyloid formation in a patient's antibody light chain is caused by a single point mutation.
Elife, 9, 2020
7C6L
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BU of 7c6l by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to cellotriose (Form II)
Descriptor: 1,2-ETHANEDIOL, CARBON DIOXIDE, CHLORIDE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
7C6H
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BU of 7c6h by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in an open-liganded state bound to laminaribiose
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-10-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
7C6Z
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BU of 7c6z by Molmil
Crystal structure of beta-glycosides-binding protein (W67A) of ABC transporter in an open state
Descriptor: 1,2-ETHANEDIOL, CARBON DIOXIDE, CHLORIDE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-22
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
4YXP
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BU of 4yxp by Molmil
The structure of the folded domain of the signature multifunctional protein ICP27 from herpes simplex virus-1 reveals an intertwined dimer.
Descriptor: ZINC ION, mRNA export factor
Authors:Tunnicliffe, R.B, Schacht, M, Levy, C.W, Jowitt, T.A, Sandri-Goldin, R.M, Golovanov, A.P.
Deposit date:2015-03-23
Release date:2015-06-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The structure of the folded domain from the signature multifunctional protein ICP27 from herpes simplex virus-1 reveals an intertwined dimer.
Sci Rep, 5, 2015
7C68
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Crystal structure of beta-glycosides-binding protein of ABC transporter in a closed state bound to cellotetraose
Descriptor: 1,2-ETHANEDIOL, CARBON DIOXIDE, CHLORIDE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
7C6R
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BU of 7c6r by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to cellopentaose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-22
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
7C6N
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BU of 7c6n by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to cellotetraose (Form II)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFITE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
6UE6
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BU of 6ue6 by Molmil
PWWP1 domain of NSD2 in complex with MR837
Descriptor: 4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide, Histone-lysine N-methyltransferase NSD2, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, De Freitas, R.F, Schapira, M, Brown, P.J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2019-09-20
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2.
J.Med.Chem., 64, 2021
3KPD
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BU of 3kpd by Molmil
Crystal Structure of the CBS domain pair of protein MJ0100 in complex with 5 -methylthioadenosine and S-adenosyl-L-methionine.
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, S-ADENOSYLMETHIONINE, Uncharacterized protein MJ0100
Authors:Lucas, M, Oyenarte, I, Garcia, I.G, Arribas, E.A, Encinar, J.A, Kortazar, D, Fernandez, J.A, Mato, J.M, Martinez-Chantar, M.L, Martinez-Cruz, L.A.
Deposit date:2009-11-16
Release date:2010-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Binding of S-Methyl-5'-Thioadenosine and S-Adenosyl-l-Methionine to Protein MJ0100 Triggers an Open-to-Closed Conformational Change in Its CBS Motif Pair.
J.Mol.Biol., 396, 2010
5VB9
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BU of 5vb9 by Molmil
IL-17A in complex with peptide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Interleukin-17A, ...
Authors:Antonysamy, S, Russell, M, Zhang, A, Groshong, C, Manglicmot, D, Lu, F, Benach, J, Wasserman, S.R, Zhang, F, Afshar, S, Bina, H, Broughton, H, Chalmers, M, Dodge, J, Espada, A, Jones, S, Ting, J.P, Woodman, M.
Deposit date:2017-03-28
Release date:2018-02-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Utilization of peptide phage display to investigate hotspots on IL-17A and what it means for drug discovery.
PLoS ONE, 13, 2018
4NUT
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BU of 4nut by Molmil
Crystal structure of the complex between Snu13p and the PEP domain of Rsa1
Descriptor: 13 kDa ribonucleoprotein-associated protein, Ribosome assembly 1 protein, SULFATE ION
Authors:Charron, C, Chagot, M.E, Manival, X, Branlant, C, Charpentier, B.
Deposit date:2013-12-04
Release date:2014-12-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control
J.Cell Biol., 207, 2014
1ZRT
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BU of 1zrt by Molmil
Rhodobacter capsulatus cytochrome bc1 complex with stigmatellin bound
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, Cytochrome b, Cytochrome c1, ...
Authors:Berry, E.A, Huang, L.S, Saechao, L.K, Pon, N.G, Valkova-Valchanov, M, Daldal, F.
Deposit date:2005-05-22
Release date:2005-06-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:X-Ray Structure of Rhodobacter Capsulatus Cytochrome bc (1): Comparison with its Mitochondrial and Chloroplast Counterparts.
Photosynth.Res., 81, 2004
5MOY
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BU of 5moy by Molmil
Crystal structure of the BoNT/A2 receptor-binding domain in complex with the luminal domain of its neuronal receptor SV2C
Descriptor: 1,2-ETHANEDIOL, Botulinum neurotoxin type A, NONAETHYLENE GLYCOL, ...
Authors:Benoit, R.M, Scharer, M.A.
Deposit date:2016-12-14
Release date:2017-03-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Crystal structure of the BoNT/A2 receptor-binding domain in complex with the luminal domain of its neuronal receptor SV2C.
Sci Rep, 7, 2017
7C69
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BU of 7c69 by Molmil
Crystal structure of beta-glycosides-binding protein of ABC transporter in a closed state bound to sophorose
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Sugar ABC transporter, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
7C6V
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BU of 7c6v by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to laminaritriose (Form II)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-22
Release date:2020-09-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
5A7G
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BU of 5a7g by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LIVER CARBOXYLESTERASE 1
Authors:Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
Deposit date:2015-07-04
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
4ZZN
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BU of 4zzn by Molmil
Human ERK2 in complex with an inhibitor
Descriptor: 2-[[5-chloranyl-2-(oxan-4-ylamino)pyridin-4-yl]amino]-N-methyl-benzamide, MITOGEN-ACTIVATED PROTEIN KINASE 1, SULFATE ION
Authors:Ward, R.A, Colclough, N, Challinor, M, Debreczeni, J.E, Eckersley, K, Fairley, G, Feron, L, Flemington, V, Graham, M.A, Greenwood, R, Hopcroft, P, Howard, T.D, James, M, Jones, C.D, Jones, C.R, Renshaw, J, Roberts, K, Snow, L, Tonge, M, Yeung, K.
Deposit date:2015-04-10
Release date:2015-05-27
Last modified:2015-08-26
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structure-Guided Design of Highly Selective and Potent Covalent Inhibitors of Erk1/2.
J.Med.Chem., 58, 2015
5A7F
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BU of 5a7f by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LIVER CARBOXYLESTERASE 1, PHOSPHATE ION
Authors:Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
Deposit date:2015-07-03
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
5A7H
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BU of 5a7h by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
Descriptor: IODIDE ION, LIVER CARBOXYLESTERASE 1
Authors:Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
Deposit date:2015-07-04
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
5AQJ
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BU of 5aqj by Molmil
Fragment-based screening of HSP70 sheds light on the functional role of ATP-binding site residues
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 9H-purine-6,8-diamine, BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1, ...
Authors:Jones, A.M, Westwood, I.M, Osborne, J.D, Matthews, T.P, Cheeseman, M.D, Rowlands, M.G, Jeganathan, F, Burke, R, Lee, D, Kadi, N, Liu, M, Richards, M, McAndrew, C, Yahya, N, Dobson, S.E, Jones, K, Workman, P, Collins, I, van Montfort, R.L.M.
Deposit date:2015-09-22
Release date:2016-10-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:A fragment-based approach applied to a highly flexible target: Insights and challenges towards the inhibition of HSP70 isoforms.
Sci Rep, 6, 2016
5V1G
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BU of 5v1g by Molmil
DNA polymerase beta binary complex with 8-oxoG at the primer terminus
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(8OG))-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Freudenthal, B.D, Smith, M.R, Whitaker, A.M, Schaich, M.A.
Deposit date:2017-03-02
Release date:2017-05-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Capturing a mammalian DNA polymerase extending from an oxidized nucleotide.
Nucleic Acids Res., 45, 2017

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