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PDB: 77 件

6RNL
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L-[Ru(TAP)2(dppz)]2+ bound to the G-quadruplex forming sequence d(TAGGGTT)
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*T)-3'), POTASSIUM ION, Ru(tap)2(dppz) complex, ...
著者McQuaid, K.T, Hall, J.P, Cardin, C.J.
登録日2019-05-09
公開日2019-08-28
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Three thymine/adenine binding modes of the ruthenium complex Lambda-[Ru(TAP)2(dppz)]2+to the G-quadruplex forming sequence d(TAGGGTT) shown by X-ray crystallography.
Chem.Commun.(Camb.), 55, 2019
8OYR
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DNA Major Groove Binding by lambda-[Ru(phen)2(phi)]2+
分子名称: DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), STRONTIUM ION, ruthenium polypyridyl complex (lambda enantiomer)
著者Prieto-Otoya, T.D, Cardin, C.J, McQuaid, K.T, Paterson, N.G.
登録日2023-05-05
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Probing a Major DNA Weakness: Resolving the Groove and Sequence Selectivity of the Diimine Complex Lambda-[Ru(phen) 2 phi] 2.
Angew.Chem.Int.Ed.Engl., 63, 2024
4R8J
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d(TCGGCGCCGA) with lambda-[Ru(TAP)2(dppz)]2+ soaked in D2O
分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*(THM)P*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), ...
著者Hall, J.P, Gurung, S.P, Winter, G.W, Cardin, C.J.
登録日2014-09-02
公開日2015-10-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.
Nat Chem, 7, 2015
4RE7
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Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCIGCGCCGA)
分子名称: 5'-D(*TP*CP*IP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION, Ru(tap)2(dppz) complex
著者Hall, J.P, Cardin, C.J.
登録日2014-09-22
公開日2015-09-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.181 Å)
主引用文献The effects of DNA modification on the binding of polypyridyl ruthenium complexes
To be Published
5LFX
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Lambda-[Ru(phen)2(dppz-11,12-Me)]2+ bound to a short substituted DNA sequence
分子名称: BARIUM ION, DNA (5'-D(*(CBR)P*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*G)-3'), ...
著者Hall, J.P, Cardin, C.J.
登録日2016-07-04
公開日2017-02-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry, 23, 2017
5LFS
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Lambda-[Ru(bpy)2(dppz)]2+ bound to brominated DNA
分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*(CBR)P*GP*GP*C)-3'), ...
著者Hall, J.P, Cardin, C.J.
登録日2016-07-04
公開日2017-02-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry, 23, 2017
5LFW
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Lambda-[Ru(phen)2(dppz)]2+ bound to a short substituted DNA sequence
分子名称: BARIUM ION, DNA (5'-D(*(CBR)P*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*G)-3'), ...
著者Hall, J.P, Cardin, C.J.
登録日2016-07-04
公開日2017-02-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.
Chemistry, 23, 2017
5LS8
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Light-activated ruthenium complex bound to a DNA quadruplex
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*A)-3'), POTASSIUM ION, delta-[Ru(tap2-dppz-CN)]2+, ...
著者McQuaid, K.T, Abell, H, Hall, J.P, Cardin, C.J.
登録日2016-08-22
公開日2018-01-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Studies Reveal Enantiospecific Recognition of a DNA G-Quadruplex by a Ruthenium Polypyridyl Complex.
Angew.Chem.Int.Ed.Engl., 58, 2019
5NBE
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[Ru(TAP)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
分子名称: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), lambda-[Ru(tap2-dppz-CN)]2+
著者McQuaid, K.T, Hall, J.P, Cardin, C.J.
登録日2017-03-01
公開日2018-03-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
452D
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ACRIDINE BINDING TO DNA
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
著者Thorpe, J.H, Todd, A.K, Cardin, C.J.
登録日1999-02-18
公開日2003-03-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethlyamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5Br-U)ACG)2 at 1.3-angstrom resolution
J.Med.Chem., 42, 1999
5JEV
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del-[Ru(phen)2(dppz]2+ bound to d(TCGGCGCCGA) with Cobalt hexammine
分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Delta-Ru(phen)2(dppz) complex
著者Hall, J.P, Cardin, C.J.
登録日2016-04-19
公開日2016-09-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res., 44, 2016
5JEU
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del-[Ru(phen)2(dppz)]2+ bound to d(TCGGCGCCGA) with Ba2+
分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), ...
著者Hall, J.P, Cardin, C.J.
登録日2016-04-19
公開日2016-09-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.
Nucleic Acids Res., 44, 2016
4YMC
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BU of 4ymc by Molmil
Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2
分子名称: BARIUM ION, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3'), ...
著者Gurung, S.P, Hall, J.P, Cardin, C.J.
登録日2015-03-06
公開日2016-03-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Reversal of a single base pair step controls guanine photo-oxidation by an intercalating Ru(II) dipyridophenazine complex.
To Be Published
4E8S
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Lambda-[Ru(TAP)2(dppz{Me2}2)]2+ bound to TCGGCGCCGA at high resolution
分子名称: (11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+), 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION, ...
著者Hall, J.P, Cardin, C.J.
登録日2012-03-20
公開日2013-03-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru dppz Complexes to DNA
Organometallics, 2015
8PIP
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DNA triplex structure with Polypyridyl Ruthenium Complexes
分子名称: CHLORIDE ION, DNA (31-MER), Delta-Ru(phen)2(dppz) complex, ...
著者Abdullrahman, A, Cardin, C.J, Hall, J.P.
登録日2023-06-22
公開日2024-07-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献DNA triplex structure with bound ruthenium polypyridyl complexes
To Be Published
8PJL
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DNA duplex forming base triplets in minor groove
分子名称: DNA (5'-D(*AP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3'), MAGNESIUM ION, ...
著者Abdullrahman, A, Cardin, C.J, Hall, J.P.
登録日2023-06-23
公開日2024-07-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献DNA duplex with triplets bases in minor groove
To Be Published
367D
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1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX
分子名称: 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3', 5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE, BROMIDE ION
著者Todd, A.K, Adams, A, Thorpe, J.H, Denny, W.A, Cardin, C.J.
登録日1997-12-19
公開日2003-03-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethlyamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5Br-U)ACG)2 at 1.3-angstrom resolution
J.Med.Chem., 42, 1999
344D
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DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K
分子名称: DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3')
著者Todd, A.R, Adams, A, Powell, H.R, Cardin, C.J.
登録日1997-08-04
公開日1997-09-26
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K.
Acta Crystallogr.,Sect.D, 55, 1999
366D
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1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX
分子名称: 6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*(BRU)P*AP*CP*G)-3')
著者Todd, A.K, Adams, A, Thorpe, J.H, Denny, W.A, Cardin, C.J.
登録日1997-12-19
公開日1999-04-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution.
J.Med.Chem., 42, 1999
8P6B
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Ruthenium complex bound to an antiparallel G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), POTASSIUM ION, Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione
著者McQuaid, K.T, Cardin, C.J.
登録日2023-05-25
公開日2024-06-12
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Ruthenium complex bound to an antiparallel G-quadruplex
To Be Published
4IZQ
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GGGCATGCCC in the A-DNA Form
分子名称: DNA (5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*C)-3')
著者Hall, J.P, Ruiz-Morte, S, Murray, C.A, Cardin, C.J.
登録日2013-01-30
公開日2014-02-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献GGGCATGCCC in the A-DNA Form
To be Published
3GOM
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Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4
分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION
著者Naseer, A, Cardin, C.J.
登録日2009-03-19
公開日2009-04-07
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand.
Proc.Natl.Acad.Sci.USA, 108, 2011
3GOJ
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Barium bound to the Holliday sequence d(CCGGCGCCGG)4
分子名称: 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', BARIUM ION
著者Naseer, A, Cardin, C.J.
登録日2009-03-19
公開日2009-04-07
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Barium bound to the Holliday junction structure
To be Published
3GNK
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Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4
分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', CALCIUM ION, SODIUM ION
著者Naseer, A, Cardin, C.J.
登録日2009-03-17
公開日2009-03-31
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Calcium bound to the Holliday junction sequence d(TCGGCGCCGA)4
To be Published
2GJB
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Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with the oligonucleotide d(CGTACG)
分子名称: 5'-D(*CP*GP*TP*AP*CP*GP*)-3', N-ACRIDIN-9-YL-N'-[3-(ACRIDIN-9-YLAMINO)PROPYL]PROPANE-1,3-DIAMINE, POTASSIUM ION
著者Gan, Y, Cardin, C.J, Denny, W.A.
登録日2006-03-30
公開日2007-04-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crosslinking of DNA duplexes: X-ray crystal structure of an unsubstituted bisacridine with oligonucleotide d(CGTACG)
To be Published

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件を2024-07-10に公開中

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