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PDB: 2662 results

7KYD
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Drosophila melanogaster long-chain fatty-acyl-CoA synthetase CG6178
Descriptor: 1,2-ETHANEDIOL, 5'-O-[(S)-hydroxy(octanoyloxy)phosphoryl]adenosine, Long-chain fatty-acyl-CoA synthetase CG6178
Authors:Adams, S.T, Zephyr, J, Bohn, M.F, Schiffer, C.A, Miller, S.C.
Deposit date:2020-12-07
Release date:2022-01-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:FruitFire: a luciferase based on a fruit fly metabolic enzyme.
Biorxiv, 2023
7K8N
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Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C102
Descriptor: C102 Fab Heavy Chain, C102 Fab Light Chain, DI(HYDROXYETHYL)ETHER, ...
Authors:Jette, C.A, Barnes, C.O, Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 588, 2020
5TEI
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BU of 5tei by Molmil
Structure of human ALDH1A1 with inhibitor CM039
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 6-{[(3-fluorophenyl)methyl]sulfanyl}-5-(2-methylphenyl)-2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, CHLORIDE ION, ...
Authors:Morgan, C.A, Hurley, T.D.
Deposit date:2016-09-21
Release date:2017-09-27
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of human ALDH1A1 with inhibitor CM039
To Be Published
7JP2
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Crystal structure of TP0037 from Treponema pallidum, a D-lactate dehydrogenase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, D-lactate dehydrogenase
Authors:Brautigam, C.A, Deka, R.K, Norgard, M.V.
Deposit date:2020-08-07
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Biophysical and Biochemical Characterization of TP0037, a d-Lactate Dehydrogenase, Supports an Acetogenic Energy Conservation Pathway in Treponema pallidum.
Mbio, 11, 2020
5SZ9
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Structure-based design of a new series of N-piperidin-3-ylpyrimidine-5-carboxamides as renin inhibitors
Descriptor: (azepan-1-yl)(2-{[(furan-2-yl)methyl]amino}-6-methylpyridin-3-yl)methanone, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.C, Lane, W.
Deposit date:2016-08-12
Release date:2016-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors.
Bioorg.Med.Chem., 24, 2016
5SY2
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Structure-based design of a new series of N-piperidin-3-ylpyrimidine-5-carboxamides as renin inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, N-ethyl-4-{[(furan-2-yl)methyl]amino}-2-methyl-N-[(3S)-piperidin-3-yl]pyrimidine-5-carboxamide, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.C, Lane, W.
Deposit date:2016-08-10
Release date:2016-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors.
Bioorg.Med.Chem., 24, 2016
5T39
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BU of 5t39 by Molmil
Crystal Structure of the N-terminal domain of EvdMO1 in the presence of SAH and D-fucose
Descriptor: EvdMO1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:McCulloch, K.M, Starbird, C.A, Chen, Q, Perry, N.A, Berndt, S, Yamakawa, I, Loukachevitch, L.V, Iverson, T.M.
Deposit date:2016-08-25
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.1004 Å)
Cite:The Structure of the Bifunctional Everninomicin Biosynthetic Enzyme EvdMO1 Suggests Independent Activity of the Fused Methyltransferase-Oxidase Domains.
Biochemistry, 57, 2018
7K2T
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BU of 7k2t by Molmil
Mg2+/ATP-bound structure of the full-length WzmWzt O antigen ABC transporter in lipid nanodiscs
Descriptor: ABC transporter, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Caffalette, C.A, Zimmer, J.
Deposit date:2020-09-09
Release date:2021-01-13
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the full-length WzmWzt ABC transporter required for lipid-linked O antigen transport.
Proc.Natl.Acad.Sci.USA, 118, 2021
7K8R
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Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C135
Descriptor: C135 Fab Heavy Chain, C135 Fab Light Chain, GLYCEROL
Authors:Jette, C.A, Barnes, C.O, Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 588, 2020
7LNO
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Structure of apo-CDD-1 beta-lactamase in imidazole and MPD
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-lactamase, SULFATE ION
Authors:Smith, C.A, Vakulenko, S.B, Stewart, N.K.
Deposit date:2021-02-08
Release date:2021-05-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases.
Acs Infect Dis., 7, 2021
7LNQ
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Structure of the avibactam-CDD-1 3 minute complex in imidazole and MPD
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, (4S)-2-METHYL-2,4-PENTANEDIOL, Beta-lactamase, ...
Authors:Smith, C.A, Vakulenko, S.B, Stewart, N.K.
Deposit date:2021-02-08
Release date:2021-05-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:In Crystallo Time-Resolved Interaction of the Clostridioides difficile CDD-1 enzyme with Avibactam Provides New Insights into the Catalytic Mechanism of Class D beta-lactamases.
Acs Infect Dis., 7, 2021
3RS6
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BU of 3rs6 by Molmil
Crystal structure Dioclea virgata lectin in complexed with X-mannose
Descriptor: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, Lectin alpha chain, ...
Authors:Gadelha, C.A.A, Santi-Gadelha, T, Nagano, C.S, Bezerra, E.H.S, Bezerra, M.J.B, Alencar, K.L, Silva-Filho, J.C.
Deposit date:2011-05-02
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Dioclea virgata lectin: Relations between carbohydrate binding site and nitric oxide production.
Biochimie, 94, 2012
5SXN
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Structure-based design of a new series of N-piperidin-3-ylpyrimidine-5-carboxamides as renin inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.-C, Lane, W.
Deposit date:2016-08-09
Release date:2016-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors.
Bioorg.Med.Chem., 24, 2016
5T0V
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BU of 5t0v by Molmil
Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: the Sub-Complex Formed by the Iron Donor, Yfh1, and the Scaffold, Isu1
Descriptor: Frataxin homolog, mitochondrial, Iron sulfur cluster assembly protein 1
Authors:Ranatunga, W, Gakh, O, Galeano, B.K, Smith IV, D.Y, Soderberg, C.A, Al-Karadaghi, S, Thompson, J.R, Isaya, G.
Deposit date:2016-08-16
Release date:2016-08-31
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (17.5 Å)
Cite:Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: the Sub-Complex Formed by the Iron Donor, Yfh1, and the Scaffold, Isu1
J. Biol. Chem., 291, 2016
7JX6
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BU of 7jx6 by Molmil
STRUCTURE OF THE SARS-CoV-2 ORF8 ENCODED ACCESSORY PROTEIN
Descriptor: ORF8 protein, SODIUM ION
Authors:Hall, P.D, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-08-26
Release date:2020-09-23
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal Structure of the SARS-CoV-2 ORF8 Protein
To Be Published
7JU2
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BU of 7ju2 by Molmil
Crystal structure of the monomeric ETV6 PNT domain
Descriptor: FORMIC ACID, Transcription factor ETV6
Authors:Gerak, C.A.N, Kolesnikov, M, Murphy, M.E.P, McIntosh, L.P.
Deposit date:2020-08-19
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85002184 Å)
Cite:Biophysical characterization of the ETV6 PNT domain polymerization interfaces.
J.Biol.Chem., 296, 2021
7K8M
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BU of 7k8m by Molmil
Structure of the SARS-CoV-2 receptor binding domain in complex with the human neutralizing antibody Fab fragment, C102
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C102 Fab Heavy Chain, C102 Fab Light Chain, ...
Authors:Jette, C.A, Barnes, C.O, Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 588, 2020
7K8O
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BU of 7k8o by Molmil
Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C002
Descriptor: C002 Fab Heavy Chain, C002 Fab Light Chain, GLYCEROL, ...
Authors:Jette, C.A, Barnes, C.O, Bjorkman, P.J.
Deposit date:2020-09-27
Release date:2020-10-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Nature, 588, 2020
5U2P
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BU of 5u2p by Molmil
The crystal structure of Tp0737 from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ...
Authors:Brautigam, C.A, Deka, R.K, Tomchick, D.R, Norgard, M.V.
Deposit date:2016-11-30
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Functional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum.
Protein Sci., 26, 2017
7KYL
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BU of 7kyl by Molmil
Powassan virus Envelope protein DIII in complex with neutralizing Fab POWV-80
Descriptor: CHLORIDE ION, Envelope protein domain III, POWV-80 Fab heavy chain, ...
Authors:Errico, J.M, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-12-08
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Broadly neutralizing monoclonal antibodies protect against multiple tick-borne flaviviruses.
J.Exp.Med., 218, 2021
5FMG
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BU of 5fmg by Molmil
Structure and function based design of Plasmodium-selective proteasome inhibitors
Descriptor: (2S)-N-[(E,2S)-1-(1H-indol-3-yl)-4-methylsulfonyl-but-3-en-2-yl]-2-[[(2S)-3-(1H-indol-3-yl)-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]-4-methyl-pentanamide, BETA3 PROTEASOME SUBUNIT, PUTATIVE, ...
Authors:Li, H, O'Donoghue, A.J, van der Linden, W.A, Xie, S.C, Yoo, E, Foe, I.T, Tilley, L, Craik, C.S, da Fonseca, P.C.A, Bogyo, M.
Deposit date:2015-11-04
Release date:2016-03-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure and Function Based Design of Plasmodium-Selective Proteasome Inhibitors
Nature, 530, 2016
7K34
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Crystal structure of L-threonine transaldolase from Pseudomonas fluorescens in internal aldimine state
Descriptor: SULFATE ION, Threonine aldolase
Authors:Kumar, P, Bingman, C.A, Buller, A.R.
Deposit date:2020-09-10
Release date:2020-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate.
Acs Chem.Biol., 16, 2021
5TBD
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BU of 5tbd by Molmil
Crystal Structure of anti-MSP2 Fv fragment (mAb4D11) in complex with 3D7-MSP2 215-222
Descriptor: Fv fragment (mAb4D1) heavy chain, Merozoite surface protein 2
Authors:Seow, J, Morales, R.A.V, MacRaild, C.A, Bankala, K, Drinkwater, N, Dingjan, T, Jaipuria, G, Wilde, K, Anders, R.F, Atreya, H.S, Christ, D, McGowan, S, Norton, R.S.
Deposit date:2016-09-12
Release date:2017-02-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Characterisation of a Key Epitope in the Conserved C-Terminal Domain of the Malaria Vaccine Candidate MSP2.
J. Mol. Biol., 429, 2017
7LU6
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BU of 7lu6 by Molmil
Crystal structure of the mouse Kirrel3 D1 homodimer
Descriptor: Kin of IRRE-like protein 3, SODIUM ION
Authors:Roman, C.A, Pak, J.S, Wang, J, Ozkan, E.
Deposit date:2021-02-21
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors.
Cell Rep, 37, 2021
7LTW
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BU of 7ltw by Molmil
Crystal structure of the mouse Kirrel2 D1 homodimer
Descriptor: Kin of IRRE-like protein 2, SODIUM ION
Authors:Roman, C.A, Pak, J.S, Wang, J, Ozkan, E.
Deposit date:2021-02-20
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors.
Cell Rep, 37, 2021

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