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PDB: 40 件

1ZYQ
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BU of 1zyq by Molmil
T7 DNA polymerase in complex with 8oG and incoming ddATP
分子名称: 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG))-3', ...
著者Brieba, L.G, Kokoska, R.J, Bebenek, K, Kunkel, T.A, Ellenberger, T.
登録日2005-06-10
公開日2005-11-22
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献A lysine residue in the fingers subdomain of t7 DNA polymerase modulates the miscoding potential of 8-oxo-7,8-dihydroguanosine.
Structure, 13, 2005
2AJQ
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Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
分子名称: DNA Primer, DNA Template, T7 DNA polymerase, ...
著者Brieba, L, Ellenberger, T.
登録日2005-08-02
公開日2006-09-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing
To be Published
1TK8
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T7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation site
分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*CP*CP*CP*AP*(8OG)P*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', ...
著者Brieba, L.G, Eichman, B.F, Kokoska, R.J, Doublie, S, Kunkel, T.A, Ellenberger, T.
登録日2004-06-08
公開日2004-08-31
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J., 23, 2004
1TK5
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BU of 1tk5 by Molmil
T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strand
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*A*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG)P*TP*GP*CP*AP*A)-3', ...
著者Brieba, L.G, Eichman, B.F, Kokoska, R.J, Doublie, S, Kunkel, T.A, Ellenberger, T.
登録日2004-06-08
公開日2004-08-31
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J., 23, 2004
1TK0
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BU of 1tk0 by Molmil
T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion site
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', ...
著者Brieba, L.G, Eichman, B.F, Kokoska, R.J, Doublie, S, Kunkel, T.A, Ellenberger, T.
登録日2004-06-07
公開日2004-08-31
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J., 23, 2004
1T8E
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BU of 1t8e by Molmil
T7 DNA Polymerase Ternary Complex with dCTP at the Insertion Site.
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 25-MER, ...
著者Brieba, L.G, Eichman, B.F, Kokoska, R.J, Doublie, S, Kunkel, T.A, Ellenberger, T.
登録日2004-05-12
公開日2004-10-12
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J., 23, 2004
1TKD
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BU of 1tkd by Molmil
T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site
分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*CP*CP*CP*AP*(8OG)P*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3'), ...
著者Brieba, L.G, Eichman, B.F, Kokoska, R.J, Doublie, S, Kunkel, T.A, Ellenberger, T.
登録日2004-06-08
公開日2004-08-31
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.
Embo J., 23, 2004
3M86
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BU of 3m86 by Molmil
Crystal structure of the cysteine protease inhibitor, EhICP2, from Entamoeba histolytica
分子名称: Amoebiasin-2, CHLORIDE ION, PENTAETHYLENE GLYCOL, ...
著者Lara-Gonzalez, S, Casados-Vazquez, L.E, Brieba, L.G.
登録日2010-03-17
公開日2011-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of the cysteine protease inhibitor 2 from Entamoeba histolytica: functional convergence of a common protein fold.
Gene, 471, 2011
6OOI
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BU of 6ooi by Molmil
Crystal structure of triosephosphate isomerase from Schistosoma mansoni in complex with 2PG
分子名称: 2-PHOSPHOGLYCOLIC ACID, CHLORIDE ION, GLYCEROL, ...
著者Jimenez-Sandoval, P, Brieba, L.
登録日2019-04-23
公開日2020-01-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites.
Plos Negl Trop Dis, 14, 2020
6OOG
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BU of 6oog by Molmil
Crystal structure of triosephosphate isomerase from Taenia Solium in complex with 2PG
分子名称: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase
著者Jimenez-Sandoval, P, Brieba, L.
登録日2019-04-23
公開日2020-01-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites.
Plos Negl Trop Dis, 14, 2020
4CS5
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BU of 4cs5 by Molmil
Crystal Structure of PCNA from Litopenaeus vannamei
分子名称: PROLIFERATING CELL NUCLEAR ANTIGEN
著者Carrasco-Miranda, J.S, Lopez-Zavala, A.A, De-La-Mora, E, Rudino-Pinera, E, Brieba, L.G, Sotelo-Mundo, R.R.
登録日2014-03-04
公開日2014-04-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with Wssv DNA Polymerase Pip-Box.
Plos One, 9, 2014
5VWN
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BU of 5vwn by Molmil
Triosephosphate isomerases deletion loop 3 from Trichomonas vaginalis
分子名称: SODIUM ION, Triosephosphate isomerase
著者Lara-Gonzalez, S, Rojas-Mendez, K, Jimenez-Sandoval, P, Estrella-Hernandez, P, Brieba, L.G.
登録日2017-05-22
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献A competent catalytic active site is necessary for substrate induced dimer assembly in triosephosphate isomerase.
Biochim. Biophys. Acta, 1865, 2017
4RCX
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BU of 4rcx by Molmil
Trichomonas vaginalis triosephosphate isomerase TVAG_497370 gene (Ile-45 variant) loop 3 deletion protein
分子名称: SODIUM ION, Triosephosphate isomerase
著者Lara-Gonzalez, S, Jimenez-Sandoval, P, Estrella-Hernandez, P, Brieba, L.G.
登録日2014-09-17
公開日2015-09-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Trichomonas vaginalis triosephosphate isomerase loop 3 deletion protein
To be Published
4WJE
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BU of 4wje by Molmil
Crystal structure of Trichomonas vaginalis triosephosphate isomerase V45A at 1.3 Angstroms
分子名称: SODIUM ION, Triosephosphate isomerase
著者Jimenez-Sandoval, P, Rojas-Mendez, K, Lara-Gonzalez, S, Brieba, L.G.
登録日2014-09-29
公開日2015-10-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.285 Å)
主引用文献Crystal structure of Trichomonas vaginalis triosephosphate isomerase V45A at 1.3 Angstroms
To Be Published
3M88
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BU of 3m88 by Molmil
Crystal structure of the cysteine protease inhibitor, EhICP2, from Entamoeba histolytica
分子名称: Amoebiasin-2, CHLORIDE ION, SULFATE ION
著者Lara-Gonzalez, S, Casados-Vazquez, L.E, Brieba, L.G.
登録日2010-03-17
公開日2011-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the cysteine protease inhibitor 2 from Entamoeba histolytica: functional convergence of a common protein fold.
Gene, 471, 2011
5EYW
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BU of 5eyw by Molmil
Crystal structure of Litopenaeus vannamei triosephosphate isomerase complexed with 2-Phosphoglycolic acid
分子名称: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase
著者Carrasco-Miranda, J.S, Lopez-Zavala, A.A, Brieba, L.G, Rudino-Pinera, E, Sotelo-Mundo, R.R.
登録日2015-11-25
公開日2016-09-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei.
Biochim.Biophys.Acta, 1864, 2016
5SWK
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BU of 5swk by Molmil
Crystal structure of p53 epitope-scaffold based on a inhibitor of cysteine proteases in complex with human MDM2
分子名称: CHLORIDE ION, De novo protein based on the inhibitor Amoebiasin-1, E3 ubiquitin-protein ligase Mdm2, ...
著者Jimenez-Sandoval, P, Brieba, L.G.
登録日2016-08-08
公開日2017-10-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.923 Å)
主引用文献Mimicking a p53-MDM2 interaction based on a stable immunoglobulin-like domain scaffold.
Proteins, 86, 2018
3P91
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BU of 3p91 by Molmil
Crystal structure of Proliferating Cellular Nuclear Antigen from Entamoeba histolytica
分子名称: Proliferating cell nuclear antigen
著者Lara-Gonzalez, S, Cardona-Felix, C.S, Brieba, L.G.
登録日2010-10-15
公開日2011-06-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure and biochemical characterization of proliferating cellular nuclear antigen from a parasitic protozoon.
Acta Crystallogr.,Sect.D, 67, 2011
6BT9
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BU of 6bt9 by Molmil
Chitinase ChiA74 from Bacillus thuringiensis
分子名称: CALCIUM ION, Chitinase
著者Juarez-Hernandez, E, Brieba, L.G, Torres-Larios, A, Jimenez-Sandoval, P, Barboza-Corona, J.
登録日2017-12-05
公開日2019-03-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献The crystal structure of the chitinase ChiA74 of Bacillus thuringiensis has a multidomain assembly.
Sci Rep, 9, 2019
6BVE
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BU of 6bve by Molmil
Triosephosphate isomerase of Synechocystis in complex with 2-Phosphoglycolic acid
分子名称: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase
著者Jimenez-Sandoval, P, Castro-Torres, E, Brieba, L.G.
登録日2017-12-12
公開日2018-12-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic BacteriaSynechocystis.
Front Mol Biosci, 5, 2018
3QST
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BU of 3qst by Molmil
Crystal structure of Trichomonas vaginalis triosephosphate isomerase TVAG_096350 gene (Val-45 variant)
分子名称: SODIUM ION, Triosephosphate isomerase, putative
著者Lara-Gonzalez, S, Salgado-Lugo, H, Brieba, L.G.
登録日2011-02-21
公開日2012-07-04
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of Trichomonas vaginalis triosephosphate isomerase TVAG_096350 gene
to be published
3QSR
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BU of 3qsr by Molmil
Crystal structure of Trichomonas vaginalis triosephosphate isomerase TVAG_497370 gene (Ile-45 variant)
分子名称: SODIUM ION, Triosephosphate isomerase
著者Lara-Gonzalez, S, Salgado-Lugo, H, Brieba, L.G.
登録日2011-02-21
公開日2012-07-04
最終更新日2018-03-07
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of Trichomonas vaginalis triosephosphate isomerase TVAG_497370 gene
To be Published
4AM1
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BU of 4am1 by Molmil
Crystal structure of the marine crustacean decapod shrimp (Litopenaeus vannamei) arginine kinase in the absence of substrate or ligands.
分子名称: ARGININE KINASE
著者Lopez-Zavala, A.A, Sotelo-Mundo, R.R, Garcia-Orozco, K.D, Isac-Martinez, F, Brieba, L.G, Rudino-Pinera, E.
登録日2012-03-07
公開日2012-07-11
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystallization and X-Ray Diffraction Studies of Arginine Kinase from the White Pacific Shrimp Litopenaeus Vannamei.
Acta Crystallogr.,Sect.F, 68, 2012
4BHL
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BU of 4bhl by Molmil
Crystal structure of Litopenaeus vannamei arginine kinase in binary complex with arginine
分子名称: ARGININE, ARGININE KINASE, BETA-MERCAPTOETHANOL
著者Lopez-Zavala, A.A, Garcia-Orozco, K.D, Carrasco-Miranda, J.S, Hernandez-Flores, J.M, Sugich-Miranda, R, Velazquez-Contreras, E.F, Criscitiello, M.F, Brieba, L.G, Rudino-Pinera, E, Sotelo-Mundo, R.R.
登録日2013-04-03
公開日2013-09-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Shrimp Arginine Kinase in Binary Complex with Arginine-A Molecular View of the Phosphagen Precursor Binding to the Enzyme.
J.Bioenerg.Biomembr., 45, 2013
6NXX
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BU of 6nxx by Molmil
Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218K mutant
分子名称: SODIUM ION, Triosephosphate isomerase, cytosolic
著者Jimenez-Sandoval, P, Fuentes-Pascacio, A, Diaz-Quezada, C, Torres-Larios, A, Brieba, L.G.
登録日2019-02-10
公開日2020-02-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox-based modifications.
Plant J., 99, 2019

 

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