Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 241 results

4DP6
DownloadVisualize
BU of 4dp6 by Molmil
The 1.67 Angstrom crystal structure of reduced (CuI) poplar plastocyanin B at pH 8.0
Descriptor: COPPER (I) ION, GLYCEROL, Plastocyanin B, ...
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
4DPB
DownloadVisualize
BU of 4dpb by Molmil
The 1.00 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 8.0
Descriptor: COPPER (II) ION, Plastocyanin A, chloroplastic
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
4DPC
DownloadVisualize
BU of 4dpc by Molmil
The 1.06 Angstrom crystal structure of reduced (CuI) poplar plastocyanin A at pH 8.0
Descriptor: COPPER (I) ION, Plastocyanin A, chloroplastic
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
4DP2
DownloadVisualize
BU of 4dp2 by Molmil
The 1.8 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin B at pH 6.0
Descriptor: ACETATE ION, COPPER (II) ION, GLYCEROL, ...
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
4DP9
DownloadVisualize
BU of 4dp9 by Molmil
The 1.00 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 6.0
Descriptor: COPPER (II) ION, Plastocyanin A, chloroplastic
Authors:Kachalova, G.S, Shosheva, A.H, Bourenkov, G.P, Donchev, A.A, Dimitrov, M.I, Bartunik, H.D.
Deposit date:2012-02-13
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
J.Inorg.Biochem., 115, 2012
7RY6
DownloadVisualize
BU of 7ry6 by Molmil
Solution NMR structural bundle of the first cyclization domain from yersiniabactin synthetase (Cy1) impacted by dynamics
Descriptor: HMWP2 nonribosomal peptide synthetase
Authors:Kancherla, A.K, Mishra, S.H, Marincin, K.A, Nerli, S, Sgourakis, N.G, Dowling, D.P, Bouvignies, G, Frueh, D.P.
Deposit date:2021-08-24
Release date:2022-07-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global protein dynamics as communication sensors in peptide synthetase domains.
Sci Adv, 8, 2022
5APF
DownloadVisualize
BU of 5apf by Molmil
Hen Egg White Lysozyme reference dataset even frames
Descriptor: LYSOZYME C, SODIUM ION
Authors:Lundholm, I, Rodilla, H, Wahlgren, W.Y, Duelli, A, Bourenkov, G, Vukusic, J, Friedman, R, Stake, J, Schneider, T, Katona, G.
Deposit date:2015-09-15
Release date:2016-01-13
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Terahertz Radiation Induces Non-Thermal Structural Changes Associated with Frohlich Condensation in a Protein Crystal
Struct.Dyn., 2, 2015
5APC
DownloadVisualize
BU of 5apc by Molmil
Hen Egg White Lysozyme illuminated with 0.4THz radiation
Descriptor: LYSOZYME C, SODIUM ION
Authors:Lundholm, I, Rodilla, H, Wahlgren, W.Y, Duelli, A, Bourenkov, G, Vukusic, J, Friedman, R, Stake, J, Schneider, T, Katona, G.
Deposit date:2015-09-15
Release date:2016-01-13
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Terahertz Radiation Induces Non-Thermal Structural Changes Associated with Frohlich Condensation in a Protein Crystal
Struct.Dyn., 2, 2015
6FP4
DownloadVisualize
BU of 6fp4 by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with 1,8-Naphthyridine-2-carboxylic acid
Descriptor: (2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, 1,8-naphthyridine-2-carboxylic acid, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Silvestri, I, Fata, F, MIele, A.E, Boumis, G, Williams, D.L, Angelucci, F.
Deposit date:2018-02-09
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Fragment-Based Discovery of a Regulatory Site in Thioredoxin Glutathione Reductase Acting as "Doorstop" for NADPH Entry.
ACS Chem. Biol., 13, 2018
1HH2
DownloadVisualize
BU of 1hh2 by Molmil
Crystal structure of NusA from Thermotoga maritima
Descriptor: N UTILIZATION SUBSTANCE PROTEIN A
Authors:Worbs, M, Bourenkov, G.P, Bartunik, H.D, Huber, R, Wahl, M.C.
Deposit date:2000-12-18
Release date:2001-10-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An Extended RNA Binding Surface Through Arrayed S1 and Kh Domains in Transcription Factor Nusa
Mol.Cell, 7, 2001
6FVE
DownloadVisualize
BU of 6fve by Molmil
Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound FITC
Descriptor: 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid, Macrophage migration inhibitory factor, SULFATE ION
Authors:Samygina, V.R, Bourenkov, G, Sokolov, A.V.
Deposit date:2018-03-02
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor.
Biochemistry Mosc., 83, 2018
7QUO
DownloadVisualize
BU of 7quo by Molmil
FimH lectin domain in complex with oligomannose-6
Descriptor: FimH, NICKEL (II) ION, SULFATE ION, ...
Authors:Bouckaert, J, Bourenkov, G.P.
Deposit date:2022-01-18
Release date:2023-02-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into a cooperative switch between one and two FimH bacterial adhesins binding pauci- and high-mannose type N-glycan receptors
J.Biol.Chem., 299, 2023
4UWM
DownloadVisualize
BU of 4uwm by Molmil
Type II Baeyer-Villiger monooxygenase.The oxygenating constituent of 3,6-diketocamphane monooxygenase from CAM plasmid of Pseudomonas putida in complex with FMN.
Descriptor: 3,6-DIKETOCAMPHANE 1,6 MONOOXYGENASE, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ...
Authors:Isupov, M.N, Schroeder, E, Gibson, R.P, Beecher, J, Donadio, G, Saneei, V, Dcunha, S, McGhie, E.J, Sayer, C, Davenport, C.F, Lau, P.C, Hasegawa, Y, Iwaki, H, Kadow, M, Loschinski, K, Bornscheuer, U.T, Bourenkov, G, Littlechild, J.A.
Deposit date:2014-08-12
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Oxygenating Constituent of 3,6-Diketocamphane Monooxygenase from the Cam Plasmid of Pseudomonas Putida: The First Crystal Structure of a Type II Baeyer-Villiger Monooxygenase.
Acta Crystallogr.,Sect.D, 71, 2015
1BEC
DownloadVisualize
BU of 1bec by Molmil
BETA CHAIN OF A T CELL ANTIGEN RECEPTOR
Descriptor: 14.3.D T CELL ANTIGEN RECEPTOR
Authors:Bentley, G.A, Boulot, G, Karjalainen, K, Mariuzza, R.A.
Deposit date:1995-02-28
Release date:1995-10-25
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the beta chain of a T cell antigen receptor.
Science, 267, 1995
8BY3
DownloadVisualize
BU of 8by3 by Molmil
FimH lectin domain in complex with oligomannose-6
Descriptor: NICKEL (II) ION, SULFATE ION, Type 1 fimbrin D-mannose specific adhesin, ...
Authors:Bouckaert, J, Bourenkov, G.P.
Deposit date:2022-12-11
Release date:2023-04-12
Last modified:2023-04-26
Method:X-RAY DIFFRACTION (3.186 Å)
Cite:Structural insights into a cooperative switch between one and two FimH bacterial adhesins binding pauci- and high-mannose type N-glycan receptors.
J.Biol.Chem., 299, 2023
6F6R
DownloadVisualize
BU of 6f6r by Molmil
Crystal structure of human Caspase-1 with N-{3-[1-((S)-2-Hydroxy-5-oxo-tetrahydro-furan-3-ylcarbamoyl)-ethyl]-1-methyl-2,4-dioxo-1,2,3,4-tetrahydro-pyrimidin-5-yl}-4-(quinoxalin-2-ylamino)-benzamide
Descriptor: (3~{S})-3-[[(2~{R})-2-[3-methyl-2,6-bis(oxidanylidene)-5-[[4-(quinoxalin-2-ylamino)phenyl]carbonylamino]pyrimidin-1-yl]propanoyl]amino]-4-oxidanyl-butanoic acid, Caspase-1, SULFATE ION
Authors:Fournier, J.F, Clary, L, Chambon, S, Dumais, L, Harris, C.S, Millois-Barbuis, C, Pierre, R, Talano, S, Thoreau, E, Aubert, J, Aurelly, M, Bouix-Peter, C, Brethon, A, Chantalat, L, Christin, O, Comino, C, El-Bazbouz, G, Ghilini, A.L, Isabet, T, Lardy, C, Luzy, A.P, Mathieu, C, Mebrouk, K, Orfila, D, Pascau, J, Reverse, K, Roche, D, Rodeschini, V, Hennequin, L.F.
Deposit date:2017-12-06
Release date:2018-05-02
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rational Drug Design of Topically Administered Caspase 1 Inhibitors for the Treatment of Inflammatory Acne.
J. Med. Chem., 61, 2018
7QFC
DownloadVisualize
BU of 7qfc by Molmil
Crystal structure of cytotoxin 13 from Naja naja, orthorhombic form
Descriptor: Cytotoxin 13
Authors:Samygina, V.R, Dubova, K.M, Bourenkov, G, Utkin, Y.N, Dubovskii, P.V.
Deposit date:2021-12-05
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Variability in the Spatial Structure of the Central Loop in Cobra Cytotoxins Revealed by X-ray Analysis and Molecular Modeling.
Toxins, 14, 2022
7QHI
DownloadVisualize
BU of 7qhi by Molmil
Crystal structure of cytotoxin 13 from Naja naja, hexagonal form
Descriptor: Cytotoxin 13
Authors:Samygina, V.R, Dubova, K.M, Bourenkov, G, Utkin, Y.N, Dubovskii, P.V.
Deposit date:2021-12-12
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Variability in the Spatial Structure of the Central Loop in Cobra Cytotoxins Revealed by X-ray Analysis and Molecular Modeling.
Toxins, 14, 2022
7ZAI
DownloadVisualize
BU of 7zai by Molmil
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R.
Deposit date:2022-03-22
Release date:2022-07-13
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Role of aIF5B in archaeal translation initiation.
Nucleic Acids Res., 50, 2022
7ZAG
DownloadVisualize
BU of 7zag by Molmil
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R.
Deposit date:2022-03-22
Release date:2022-08-03
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Role of aIF5B in archaeal translation initiation.
Nucleic Acids Res., 50, 2022
7ZAH
DownloadVisualize
BU of 7zah by Molmil
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R.
Deposit date:2022-03-22
Release date:2022-08-03
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Role of aIF5B in archaeal translation initiation.
Nucleic Acids Res., 50, 2022
7YXA
DownloadVisualize
BU of 7yxa by Molmil
XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1H-3-benzazepin-3-ium-3-yl]butanoic acid, ...
Authors:Lyapina, E, Marin, E, Gusach, A, Orekhov, P, Gerasimov, A, Luginina, A, Vakhrameev, D, Ergasheva, M, Kovaleva, M, Khusainov, G, Khorn, P, Shevtsov, M, Kovalev, K, Okhrimenko, I, Bukhdruker, S, Popov, P, Hu, H, Weierstall, U, Liu, W, Cho, Y, Gushchin, I, Rogachev, A, Bourenkov, G, Park, S, Park, G, Huyn, H.J, Park, J, Gordeliy, V, Borshchevskiy, V, Mishin, A, Cherezov, V.
Deposit date:2022-02-15
Release date:2022-08-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for receptor selectivity and inverse agonism in S1P 5 receptors.
Nat Commun, 13, 2022
4RJK
DownloadVisualize
BU of 4rjk by Molmil
Acetolactate synthase from Bacillus subtilis bound to LThDP - crystal form II
Descriptor: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, Acetolactate synthase, MAGNESIUM ION, ...
Authors:Sommer, B, von Moeller, H, Haack, M, Qoura, F, Langner, C, Bourenkov, G, Garbe, D, Brueck, T, Loll, B.
Deposit date:2014-10-09
Release date:2014-10-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detailed Structure-Function Correlations of Bacillus subtilis Acetolactate Synthase.
Chembiochem, 16, 2015
8QLE
DownloadVisualize
BU of 8qle by Molmil
Crystal structure of the light-driven sodium pump ErNaR in the monomeric form at pH 4.6
Descriptor: Bacteriorhodopsin-like protein, EICOSANE, OLEIC ACID
Authors:Kovalev, K, Podoliak, E, Lamm, G.H.U, Astashkin, R, Bourenkov, G.
Deposit date:2023-09-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A subgroup of light-driven sodium pumps with an additional Schiff base counterion.
Nat Commun, 15, 2024
5LF0
DownloadVisualize
BU of 5lf0 by Molmil
Human 20S proteasome complex with Epoxomicin at 2.4 Angstrom
Descriptor: CHLORIDE ION, EPOXOMICIN (peptide inhibitor), MAGNESIUM ION, ...
Authors:Schrader, J, Henneberg, F, Mata, R, Tittmann, K, Schneider, T.R, Stark, H, Bourenkov, G, Chari, A.
Deposit date:2016-06-30
Release date:2016-08-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Science, 353, 2016

223532

數據於2024-08-07公開中

PDB statisticsPDBj update infoContact PDBjnumon