PDB Search results for query - Protein Data Bank Japan

PDB: 65 results

Crystal structure of polo-like kinase(PLK1)PBD in complex with phospho peptide
Descriptor:	Serine/threonine-protein kinase PLK1, phospho peptide VAL-LEU-SER-TPO-LEU-NH2
Authors:	Bong, S.M, Lee, B.I, Kim, K.T.
Deposit date:	2014-01-03
Release date:	2014-08-13
Last modified:	2019-12-18
Method:	X-RAY DIFFRACTION (1.694 Å)
Cite:	The condensin component NCAPG2 regulates microtubule-kinetochore attachment through recruitment of Polo-like kinase 1 to kinetochores. Nat Commun, 5, 2014

3KSG

structure of fRMsr of Staphylococcus aureus (complex with substrate)
Descriptor:	METHIONINE SULFOXIDE, Putative uncharacterized protein
Authors:	Bong, S.M, Chi, Y.M.
Deposit date:	2009-11-23
Release date:	2010-05-26
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structure of fRMsr of Staphylococcus aureus To be published

3KSI

structure of fRMsr of Staphylococcus aureus (complex with 2-propanol)
Descriptor:	ISOPROPYL ALCOHOL, Putative uncharacterized protein, SULFATE ION
Authors:	Bong, S.M, Chi, Y.M.
Deposit date:	2009-11-23
Release date:	2010-05-26
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	structure of fRMsr of Staphylococcus aureus To be Published

3KSH

Structure of fRMsr of Staphylococcus aureus (oxidized form)
Descriptor:	Putative uncharacterized protein, SULFATE ION
Authors:	Bong, S.M, Chi, Y.M.
Deposit date:	2009-11-23
Release date:	2010-05-26
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Structure of fRMsr of Staphylococcus aureus To be Published

3KSF

structure of fRMsr of Staphylococcus aureus (reduced form)
Descriptor:	DI(HYDROXYETHYL)ETHER, Putative uncharacterized protein
Authors:	Bong, S.M, Chi, Y.M.
Deposit date:	2009-11-23
Release date:	2010-05-26
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	structure of fRMsr of Staphylococcus aureus To be Published

7UVT

Kinetically trapped misfolded state of the Tetrahymena ribozyme
Descriptor:	RNA (386-MER)
Authors:	Bonilla, S.L, Vicens, Q, Kieft, J.S.
Deposit date:	2022-05-02
Release date:	2022-08-31
Last modified:	2024-02-14
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Cryo-EM reveals an entangled kinetic trap in the folding of a catalytic RNA. Sci Adv, 8, 2022

8CJH

Architecture of a PKS-NRPS hybrid megaenzyme involved in the biosynthesis of the genotoxin colibactin
Descriptor:	Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK
Authors:	Bonhomme, S, Dessen, A, Macheboeuf, P.
Deposit date:	2023-02-13
Release date:	2023-04-26
Last modified:	2023-06-14
Method:	X-RAY DIFFRACTION (2.982 Å)
Cite:	Architecture of a PKS-NRPS hybrid megaenzyme involved in the biosynthesis of the genotoxin colibactin. Structure, 31, 2023

6EY7

Human cytomegalovirus terminase nuclease domain, Mn soaked, inhibitor bound
Descriptor:	4-[(4-fluorophenyl)methyl-methyl-amino]-2,4-bis(oxidanylidene)butanoic acid, CHLORIDE ION, MANGANESE (II) ION, ...
Authors:	Bongarzone, S, Nadal, M, Kaczmarska, Z, Machon, C, Alvarez, M, Albericio, F, Coll, M.
Deposit date:	2017-11-10
Release date:	2018-10-03
Last modified:	2024-01-17
Method:	X-RAY DIFFRACTION (2.9 Å)
Cite:	Structure-Driven Discovery of alpha , gamma-Diketoacid Inhibitors Against UL89 Herpesvirus Terminase. Acs Omega, 3, 2018

3RFB

Structure of fRMsr
Descriptor:	METHIONINE SULFOXIDE, Putative uncharacterized protein
Authors:	Bong, S.M, Chi, Y.M.
Deposit date:	2011-04-06
Release date:	2012-04-11
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structure of fRMsr to be published

2GFC

cAMP-dependent protein kinase PKA catalytic subunit with PKI-5-24
Descriptor:	N-OCTANE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-03-21
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	Structural Analysis of Protein Kinase A Mutants with Rho-kinase Inhibitor Specificity. J.Biol.Chem., 281, 2006

2GNH

PKA five fold mutant model of Rho-kinase with H1152P
Descriptor:	(S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

2GNJ

PKA three fold mutant model of Rho-kinase with Y-27632
Descriptor:	(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.28 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

2GNF

Protein kinase A fivefold mutant model of Rho-kinase with Y-27632
Descriptor:	(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.28 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

2GNG

Protein kinase A fivefold mutant model of Rho-kinase
Descriptor:	cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, alpha-catalytic subunit
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

3B6R

Crystal structure of Human Brain-type Creatine Kinase
Descriptor:	ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, Creatine kinase B-type, ...
Authors:	Bong, S.M, Moon, J.H, Hwang, K.Y.
Deposit date:	2007-10-29
Release date:	2008-11-04
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural studies of human brain-type creatine kinase complexed with the ADP-Mg2+-NO3- -creatine transition-state analogue complex Febs Lett., 582, 2008

2GNI

PKA fivefold mutant model of Rho-kinase with inhibitor Fasudil (HA1077)
Descriptor:	5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.27 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

2GNL

PKA threefold mutant model of Rho-kinase with inhibitor H-1152P
Descriptor:	(S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE, cAMP-dependent protein kinase inhibitor alpha, cAMP-dependent protein kinase, ...
Authors:	Bonn, S, Herrero, S, Breitenlechner, C.B, Engh, R.A, Gassel, M, Bossemeyer, D.
Deposit date:	2006-04-10
Release date:	2006-05-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Structural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity J.Biol.Chem., 281, 2006

2KPK

MAGI-1 PDZ1
Descriptor:	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
Authors:	Charbonnier, S, Nomine, Y, Ramirez, J, Luck, K, Stote, R.H, Trave, G, Kieffer, B, Atkinson, R.A.
Deposit date:	2009-10-16
Release date:	2010-10-27
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	The structural and dynamic response of MAGI-1 PDZ1 with non-canonical domain boundaries to binding of human papillomavirus (HPV) E6 J.Mol.Biol., 2011

2KPL

MAGI-1 PDZ1 / E6CT
Descriptor:	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1, Protein E6
Authors:	Charbonnier, S, Nomine, Y, Ramirez, J, Luck, K, Stote, R.H, Trave, G, Kieffer, B, Atkinson, R.A.
Deposit date:	2009-10-16
Release date:	2010-10-27
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	The structural and dynamic response of MAGI-1 PDZ1 with non-canonical domain boundaries to binding of human papillomavirus (HPV) E6 J.Mol.Biol., 2011

7SCQ

tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 2.
Descriptor:	Tyrosine--tRNA ligase, tRNA-like structure from brome mosaic virus RNA 3.
Authors:	Kieft, J.S, Bonilla, S.L.
Deposit date:	2021-09-28
Release date:	2021-12-01
Method:	ELECTRON MICROSCOPY (6 Å)
Cite:	A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science, 374, 2021

7SC6

tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 1.
Descriptor:	Tyrosine--tRNA ligase, tRNA-like structure from brome mosaic virus RNA 3
Authors:	Kieft, J.S, Bonilla, S.L.
Deposit date:	2021-09-27
Release date:	2021-12-01
Method:	ELECTRON MICROSCOPY (5.51 Å)
Cite:	A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science, 374, 2021

7SAM

tRNA-like Structure from Brome Mosaic Virus
Descriptor:	Viral RNA
Authors:	Kieft, J.S, Bonilla, S.L.
Deposit date:	2021-09-22
Release date:	2021-12-01
Method:	ELECTRON MICROSCOPY (4.3 Å)
Cite:	A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science, 374, 2021

2FK4

Solution structure of the C-terminal zinc binding domain of the HPV16 E6 oncoprotein
Descriptor:	Protein E6, ZINC ION
Authors:	Nomine, Y, Charbonnier, S.
Deposit date:	2006-01-04
Release date:	2006-01-24
Last modified:	2021-10-20
Method:	SOLUTION NMR
Cite:	Structural and functional analysis of E6 oncoprotein: insights in the molecular pathways of human papillomavirus-mediated pathogenesis Mol.Cell, 21, 2006

8EWV

DNA-encoded library (DEL)-enabled discovery of proximity inducing small molecules
Descriptor:	Bromodomain-containing protein 4, Elongin-B, Elongin-C, ...
Authors:	Schreiber, S.L, Shu, W, Ma, X, Michaud, G, Bonazzi, S, Berst, F.
Deposit date:	2022-10-24
Release date:	2023-10-04
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	DNA-encoded library-enabled discovery of proximity-inducing small molecules. Nat.Chem.Biol., 20, 2024

6UD0

Solution-state NMR structural ensemble of human Tsg101 UEV in complex with K63-linked diubiquitin
Descriptor:	Tumor susceptibility gene 101 protein, Ubiquitin
Authors:	Strickland, M, Watanabe, S, Bonn, S.M, Camara, C.M, Fushman, D, Carter, C.A, Tjandra, N.
Deposit date:	2019-09-18
Release date:	2021-03-17
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Tsg101/ESCRT-I Recruitment Regulated by the Dual Binding Modes of K63-Linked Diubiquitin Structure, 2021

12 3 >

Total results:	65
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Bon, S"