Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 171 results

7NNP
DownloadVisualize
BU of 7nnp by Molmil
Rb-loaded cryo-EM structure of the E1-ATP KdpFABC complex.
Descriptor: CARDIOLIPIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Potassium-transporting ATPase ATP-binding subunit, ...
Authors:Silberberg, J.M, Corey, R.A, Hielkema, L, Stock, C, Stansfeld, P.J, Paulino, C, Haenelt, I.
Deposit date:2021-02-25
Release date:2021-07-28
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC.
Nat Commun, 12, 2021
7NNL
DownloadVisualize
BU of 7nnl by Molmil
Cryo-EM structure of the KdpFABC complex in an E1-ATP conformation loaded with K+
Descriptor: CARDIOLIPIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ...
Authors:Silberberg, J.M, Corey, R.A, Hielkema, L, Stock, C, Stansfeld, P.J, Paulino, C, Haenelt, I.
Deposit date:2021-02-25
Release date:2021-07-28
Last modified:2021-09-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC.
Nat Commun, 12, 2021
6DUQ
DownloadVisualize
BU of 6duq by Molmil
Structure of a Rho-NusG KOW domain complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Berger, J.M, Lawson, M.R.
Deposit date:2018-06-21
Release date:2018-09-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.
Mol. Cell, 71, 2018
1BGW
DownloadVisualize
BU of 1bgw by Molmil
TOPOISOMERASE RESIDUES 410-1202,
Descriptor: TOPOISOMERASE
Authors:Berger, J.M, Gamblin, S.J, Harrison, S.C, Wang, J.C.
Deposit date:1996-02-20
Release date:1996-07-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and mechanism of DNA topoisomerase II.
Nature, 379, 1996
1MEY
DownloadVisualize
BU of 1mey by Molmil
CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA
Descriptor: CHLORIDE ION, CONSENSUS ZINC FINGER, DNA (5'-D(*AP*TP*GP*AP*GP*GP*CP*AP*GP*AP*AP*CP*T)-3'), ...
Authors:Kim, C.A, Berg, J.M.
Deposit date:1996-09-27
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A 2.2 A Resolution Crystal Structure of a Designed Zinc Finger Protein Bound to DNA
Nat.Struct.Biol., 3, 1996
1M9O
DownloadVisualize
BU of 1m9o by Molmil
NMR structure of the first Zinc Binding domain of Nup475/TTP/TIS11
Descriptor: Tristetraproline, ZINC ION
Authors:Amann, B.T, Worthington, M.T, Berg, J.M.
Deposit date:2002-07-29
Release date:2003-06-03
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A Cys3His Zinc-Binding Domain from Nup475/Tristetraproline: a Novel Fold with a Disklike Structure
Biochemistry, 42, 2003
1FCH
DownloadVisualize
BU of 1fch by Molmil
CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGION OF HUMAN PEX5
Descriptor: PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR, PTS1-CONTAINING PEPTIDE
Authors:Gatto Jr, G.J, Geisbrecht, B.V, Gould, S.J, Berg, J.M.
Deposit date:2000-07-18
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5.
Nat.Struct.Biol., 7, 2000
1PXE
DownloadVisualize
BU of 1pxe by Molmil
Solution Structure of a CCHHC Domain of Neural Zinc Finger Factor-1
Descriptor: ZINC ION, neural zinc finger transcription factor 1
Authors:Berkovits-Cymet, H.J, Amann, B.T, Berg, J.M.
Deposit date:2003-07-03
Release date:2004-02-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of a CCHHC Domain of Neural Zinc Finger Factor-1 and Its Implications for DNA Binding.
Biochemistry, 43, 2004
4NMN
DownloadVisualize
BU of 4nmn by Molmil
Aquifex aeolicus replicative helicase (DnaB) complexed with ADP, at 3.3 resolution
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Replicative DNA helicase, ...
Authors:Lyubimov, A.Y, Strycharska, M.S, Erzberger, J.P, Berger, J.M.
Deposit date:2013-11-15
Release date:2014-01-29
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Nucleotide and partner-protein control of bacterial replicative helicase structure and function.
Mol.Cell, 52, 2013
1AOL
DownloadVisualize
BU of 1aol by Molmil
FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GP70, ZINC ION
Authors:Fass, D, Davey, R.A, Hamson, C.A, Kim, P.S, Cunningham, J.M, Berger, J.M.
Deposit date:1997-07-08
Release date:1997-10-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
6U0W
DownloadVisualize
BU of 6u0w by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS K133M at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G.
Deposit date:2019-08-15
Release date:2019-08-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Toward the computational design of protein crystals with improved resolution.
Acta Crystallogr D Struct Biol, 75, 2019
4EDG
DownloadVisualize
BU of 4edg by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to ATP and Manganese
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BENZAMIDINE, DNA primase, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDK
DownloadVisualize
BU of 4edk by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to GTP and Manganese
Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-27
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EE1
DownloadVisualize
BU of 4ee1 by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese
Descriptor: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ...
Authors:Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
Deposit date:2012-03-28
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4Z98
DownloadVisualize
BU of 4z98 by Molmil
Crystal Structure of Hen Egg White Lysozyme using Serial X-ray Diffraction Data Collection
Descriptor: ACETATE ION, Lysozyme C
Authors:Murray, T.D, Lyubimov, A.Y, Ogata, C.M, Uervirojnangkoorn, M, Brunger, A.T, Berger, J.M.
Deposit date:2015-04-10
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
2Q17
DownloadVisualize
BU of 2q17 by Molmil
Formylglycine Generating Enzyme from Streptomyces coelicolor
Descriptor: CALCIUM ION, formylglycine generating enzyme
Authors:Carlson, B.L, Ballister, E.R, Skordalakes, E, King, D.S, Breidenbach, M.A, Gilmore, S.A, Berger, J.M, Bertozzi, C.R.
Deposit date:2007-05-23
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Function and structure of a prokaryotic formylglycine-generating enzyme.
J.Biol.Chem., 283, 2008
1AJJ
DownloadVisualize
BU of 1ajj by Molmil
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
Descriptor: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR, SULFATE ION
Authors:Fass, D, Blacklow, S.C, Kim, P.S, Berger, J.M.
Deposit date:1997-05-04
Release date:1997-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
Nature, 388, 1997
1AIK
DownloadVisualize
BU of 1aik by Molmil
HIV GP41 CORE STRUCTURE
Descriptor: HIV-1 GP41 GLYCOPROTEIN
Authors:Chan, D.C, Fass, D, Berger, J.M, Kim, P.S.
Deposit date:1997-04-20
Release date:1997-06-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Core structure of gp41 from the HIV envelope glycoprotein.
Cell(Cambridge,Mass.), 89, 1997
1A8V
DownloadVisualize
BU of 1a8v by Molmil
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
Descriptor: COPPER (II) ION, TRANSCRIPTION TERMINATION FACTOR RHO
Authors:Fass, D, Bogden, C, Berger, J.M.
Deposit date:1998-03-28
Release date:1999-05-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
1B79
DownloadVisualize
BU of 1b79 by Molmil
N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB
Descriptor: DnaB Helicase
Authors:Fass, D, Bogden, C.E, Berger, J.M.
Deposit date:1999-01-28
Release date:1999-06-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the N-terminal domain of the DnaB hexameric helicase.
Structure Fold.Des., 7, 1999
7UGW
DownloadVisualize
BU of 7ugw by Molmil
M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin
Descriptor: DNA (46-MER), DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Hauk, G, Imai, Y, Lewis, K, Berger, J.M.
Deposit date:2022-03-25
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis.
Nat.Chem.Biol., 18, 2022
7ZRG
DownloadVisualize
BU of 7zrg by Molmil
Cryo-EM map of the WT KdpFABC complex in the E1_ATPearly conformation, under turnover conditions
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CARDIOLIPIN, POTASSIUM ION, ...
Authors:Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Rheinberger, J, Wunnicke, D, Dubach, V.R.A, Stansfeld, P.J, Haenelt, I, Paulino, C.
Deposit date:2022-05-04
Release date:2022-11-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
4TXY
DownloadVisualize
BU of 4txy by Molmil
Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase, a prokaryotic cGAS homolog
Descriptor: Cyclic AMP-GMP synthase, MAGNESIUM ION
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.0001 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014
4TY0
DownloadVisualize
BU of 4ty0 by Molmil
Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase in complex with linear intermediate 5' pppA(3',5')pG
Descriptor: ACETATE ION, Cyclic AMP-GMP synthase, MAGNESIUM ION, ...
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014
4TXZ
DownloadVisualize
BU of 4txz by Molmil
Crystal structure of Vibrio cholerae DncV cyclic AMP-GMP synthase in complex with nonhydrolyzable GTP
Descriptor: Cyclic AMP-GMP synthase, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Authors:Kranzusch, P.J, Lee, A.S.Y, Wilson, S.C, Solovykh, M.S, Vance, R.E, Berger, J.M, Doudna, J.A.
Deposit date:2014-07-07
Release date:2014-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity.
Cell, 158, 2014

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon