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PDB: 283 results

3J7Z
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BU of 3j7z by Molmil
Structure of the E. coli 50S subunit with ErmCL nascent chain
Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Arenz, S, Meydan, S, Starosta, A.L, Berninghausen, O, Beckmann, R, Vazquez-Laslop, N, Wilson, D.N.
Deposit date:2014-08-27
Release date:2014-10-22
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
Mol.Cell, 56, 2014
9GSN
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BU of 9gsn by Molmil
Structure of the ATPgS-S1 state of the heptameric Bcs1 AAA-ATPase
Descriptor: Mitochondrial chaperone BCS1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Rosales-Hernandez, C, Beckmann, R.
Deposit date:2024-09-16
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein.
Embo J., 2025
6RXY
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BU of 6rxy by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state a
Descriptor: 35S rRNA, 40S ribosomal protein S13-like protein, 40S ribosomal protein S14-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
6RXT
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BU of 6rxt by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state A
Descriptor: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S13-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
6RXZ
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BU of 6rxz by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state b
Descriptor: 35S ribosomal RNA, 40S ribosomal protein S11-like protein, 40S ribosomal protein S13-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
6RXX
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BU of 6rxx by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala
Descriptor: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
6RXV
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BU of 6rxv by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2
Descriptor: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
6YLH
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BU of 6ylh by Molmil
Rix1-Rea1 pre-60S particle - full composite structure
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
5O2R
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BU of 5o2r by Molmil
Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Graf, M, Berninghausen, O, Beckmann, R, Wilson, D.N.
Deposit date:2017-05-22
Release date:2017-07-26
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:An antimicrobial peptide that inhibits translation by trapping release factors on the ribosome.
Nat. Struct. Mol. Biol., 24, 2017
6YLY
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BU of 6yly by Molmil
pre-60S State NE2 (TAP-Flag-Nop53)
Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
6YLX
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BU of 6ylx by Molmil
pre-60S State NE1 (TAP-Flag-Nop53)
Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
2WVW
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BU of 2wvw by Molmil
Cryo-EM structure of the RbcL-RbcX complex
Descriptor: RBCX PROTEIN, RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
Authors:Liu, C, Young, A.L, Starling-Windhof, A, Bracher, A, Saschenbrecker, S, Rao, B.V, Rao, K.V, Berninghausen, O, Mielke, T, Hartl, F.U, Beckmann, R, Hayer-Hartl, M.
Deposit date:2009-10-20
Release date:2010-01-19
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Coupled Chaperone Action in Folding and Assembly of Hexadecameric Rubisco
Nature, 463, 2010
6YLG
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BU of 6ylg by Molmil
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Kater, L, Beckmann, R.
Deposit date:2020-04-07
Release date:2020-07-29
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Mol.Cell, 79, 2020
9GS2
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BU of 9gs2 by Molmil
Structure of the Rieske bound Apo1 state of the heptameric Bcs1 AAA-ATPase
Descriptor: Cytochrome b-c1 complex subunit Rieske, mitochondrial, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Rosales-Hernandez, C, Beckmann, R.
Deposit date:2024-09-13
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein.
Embo J., 2025
9GU9
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BU of 9gu9 by Molmil
Structure of the ATPgS-S2 state of the heptameric Bcs1 AAA-ATPase
Descriptor: Mitochondrial chaperone BCS1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Rosales-Hernandez, C, Beckmann, R.
Deposit date:2024-09-19
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein.
Embo J., 2025
6I0Y
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BU of 6i0y by Molmil
TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Su, T, Kudva, R, von Heijne, G, Beckmann, R.
Deposit date:2018-10-26
Release date:2018-12-05
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Folding pathway of an Ig domain is conserved on and off the ribosome.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6RXU
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BU of 6rxu by Molmil
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
Descriptor: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ...
Authors:Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2019-06-10
Release date:2019-08-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Mol.Cell, 75, 2019
5OQL
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BU of 5oql by Molmil
Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
Descriptor: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ...
Authors:Cheng, J, Kellner, N, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2017-08-12
Release date:2017-10-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.
Nat. Struct. Mol. Biol., 24, 2017
3J2I
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BU of 3j2i by Molmil
Structure of late pre-60S ribosomal subunits with nuclear export factor Arx1 bound at the peptide exit tunnel
Descriptor: Eukaryotic translation initiation factor 6, Proliferation-associated protein 2G4
Authors:Bradatsch, B, Leidig, C, Granneman, S, Gnaedig, M, Tollervey, D, Boettcher, B, Beckmann, R, Hurt, E.
Deposit date:2012-10-04
Release date:2012-11-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.9 Å)
Cite:Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
Nat.Struct.Mol.Biol., 19, 2012
6R6G
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BU of 6r6g by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
Deposit date:2019-03-27
Release date:2019-07-10
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R86
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BU of 6r86 by Molmil
Yeast Vms1-60S ribosomal subunit complex (post-state)
Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R.
Deposit date:2019-03-31
Release date:2019-07-31
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis.
Nature, 570, 2019
6R5Q
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BU of 6r5q by Molmil
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R.
Deposit date:2019-03-25
Release date:2019-07-10
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6ZXH
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BU of 6zxh by Molmil
Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R.
Deposit date:2020-07-29
Release date:2020-12-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis for the final steps of human 40S ribosome maturation.
Nature, 587, 2020
6ZXG
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BU of 6zxg by Molmil
Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Ameismeier, M, Zemp, I, van den Heuvel, J, Thoms, M, Berninghausen, O, Kutay, U, Beckmann, R.
Deposit date:2020-07-29
Release date:2020-12-02
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis for the final steps of human 40S ribosome maturation.
Nature, 587, 2020
6ZVH
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BU of 6zvh by Molmil
EDF1-ribosome complex
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Best, K.M, Denk, T, Cheng, J, Thoms, M, Berninghausen, O, Beckmann, R.
Deposit date:2020-07-24
Release date:2020-08-19
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:EDF1 coordinates cellular responses to ribosome collisions.
Elife, 9, 2020

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