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PDB: 10 results

7S6B
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BU of 7s6b by Molmil
Crystal structure of modular polyketide synthase apo-Lsd14 from the Lasalocid biosynthesis pathway, trapped in the transacylation step
Descriptor: Polyketide synthase
Authors:Bagde, S.R, Mathews, I.I, Kim, C.-Y.
Deposit date:2021-09-13
Release date:2021-11-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Modular polyketide synthase contains two reaction chambers that operate asynchronously.
Science, 374, 2021
7S6C
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BU of 7s6c by Molmil
CryoEM structure of modular PKS holo-Lsd14 stalled at the condensation step and bound to antibody fragment 1B2, composite structure
Descriptor: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, 4'-PHOSPHOPANTETHEINE, 6-deoxyerythronolide-B synthase EryA2, ...
Authors:Bagde, S.R, Kim, C.-Y, Fromme, J.C.
Deposit date:2021-09-13
Release date:2021-11-03
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Modular polyketide synthase contains two reaction chambers that operate asynchronously.
Science, 374, 2021
7S6D
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BU of 7s6d by Molmil
CryoEM structure of modular PKS holo-Lsd14 bound to antibody fragment 1B2, composite structure
Descriptor: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4, ...
Authors:Bagde, S.R, Kim, C.-Y, Fromme, J.C.
Deposit date:2021-09-13
Release date:2021-11-03
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Modular polyketide synthase contains two reaction chambers that operate asynchronously.
Science, 374, 2021
7U06
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BU of 7u06 by Molmil
Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)
Descriptor: GTP-binding protein YPT32/YPT11, PALMITIC ACID, TRAPP-associated protein TCA17, ...
Authors:Bagde, S.R, Fromme, J.C.
Deposit date:2022-02-17
Release date:2022-04-27
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of a TRAPPII-Rab11 activation intermediate reveals GTPase substrate selection mechanisms.
Sci Adv, 8, 2022
7U05
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BU of 7u05 by Molmil
Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/closed state (composite structure)
Descriptor: GTP-binding protein YPT32/YPT11, PALMITIC ACID, TRAPP-associated protein TCA17, ...
Authors:Bagde, S.R, Fromme, J.C.
Deposit date:2022-02-17
Release date:2022-04-27
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of a TRAPPII-Rab11 activation intermediate reveals GTPase substrate selection mechanisms.
Sci Adv, 8, 2022
9AZX
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BU of 9azx by Molmil
Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with NDPr
Descriptor: Non-structural protein 3, {(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate
Authors:Wallace, S.D, Bagde, S.R, Fromme, J.C.
Deposit date:2024-03-11
Release date:2024-05-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.395 Å)
Cite:GS-441524-Diphosphate-Ribose Derivatives as Nanomolar Binders and Fluorescence Polarization Tracers for SARS-CoV-2 and Other Viral Macrodomains.
Acs Chem.Biol., 19, 2024
8GIA
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BU of 8gia by Molmil
Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with TFMU-ADPr
Descriptor: Non-structural protein 3, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3S,4R,5R)-3,4-dihydroxy-5-{[2-oxo-4-(trifluoromethyl)-2H-1-benzopyran-7-yl]oxy}oxolan-2-yl]methyl dihydrogen diphosphate
Authors:Wallace, S.D, Bagde, S.R, Fromme, J.C.
Deposit date:2023-03-13
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A Fluorescence Polarization Assay for Macrodomains Facilitates the Identification of Potent Inhibitors of the SARS-CoV-2 Macrodomain.
Acs Chem.Biol., 18, 2023
8CTQ
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BU of 8ctq by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-48
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
8CTP
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BU of 8ctp by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-23
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
7BVZ
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BU of 7bvz by Molmil
Crystal structure of MreB5 of Spiroplasma citri bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell shape determining protein MreB, MAGNESIUM ION, ...
Authors:Pande, V, Bagde, S.R, Gayathri, P.
Deposit date:2020-04-12
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:MreB5 Is a Determinant of Rod-to-Helical Transition in the Cell-Wall-less Bacterium Spiroplasma.
Curr.Biol., 30, 2020

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PDB entries from 2024-10-30

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