Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1215 results

1K9L
DownloadVisualize
BU of 1k9l by Molmil
Solution Structure of DNA TATGAGCGCTCATA
Descriptor: 5'-D(*TP*AP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*TP*A)-3'
Authors:Kaluarachchi, K, Gorenstein, D.G, Luxon, B.A.
Deposit date:2001-10-29
Release date:2001-11-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:How Do Proteins Recognize DNA? Solution Structure and Local Conformational Dynamics of Lac Operators by 2D NMR
J.Biomol.Struct.Dyn., Conversation 11, 2000
1TVD
DownloadVisualize
BU of 1tvd by Molmil
VARIABLE DOMAIN OF T CELL RECEPTOR DELTA CHAIN
Descriptor: T CELL RECEPTOR
Authors:Li, H.M, Lebedeva, M.I, Llera, A.S, Fields, B.A, Brenner, M.B, Mariuzza, R.A.
Deposit date:1997-10-19
Release date:1998-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Vdelta domain of a human gammadelta T-cell antigen receptor.
Nature, 391, 1998
1U2H
DownloadVisualize
BU of 1u2h by Molmil
X-ray Structure of the N-terminally truncated human APEP-1
Descriptor: Aortic preferentially expressed protein 1
Authors:Manjasetty, B.A, Scheich, C, Roske, Y, Niesen, F.H, Gotz, F, Bussow, K, Heinemann, U.
Deposit date:2004-07-19
Release date:2005-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:X-ray structure of engineered human Aortic Preferentially Expressed Protein-1 (APEG-1)
Bmc Struct.Biol., 5, 2005
1U20
DownloadVisualize
BU of 1u20 by Molmil
Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29
Descriptor: GLYCEROL, U8 snoRNA-binding protein X29
Authors:Scarsdale, J.N, Peculis, B.A, Wright, H.T.
Deposit date:2004-07-16
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29
TO BE PUBLISHED
1KFZ
DownloadVisualize
BU of 1kfz by Molmil
Solution Structure of C-terminal Sem-5 SH3 Domain (Ensemble of 16 Structures)
Descriptor: SEX MUSCLE ABNORMAL PROTEIN 5
Authors:Ferreon, J.C, Volk, D.E, Luxon, B.A, Gorenstein, D, Hilser, V.J.
Deposit date:2001-11-24
Release date:2003-05-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure, Dynamics and Thermodynamics of the Native State Ensemble of Sem-5 C-Terminal SH3 Domain
Biochemistry, 42, 2003
1U68
DownloadVisualize
BU of 1u68 by Molmil
DHNA 7,8 DIHYDRONEOPTERIN COMPLEX
Descriptor: 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE, Dihydroneopterin aldolase
Authors:Sanders, W.J, Nienaber, V.L, Lerner, C.G, McCall, J.O, Merrick, S.M, Swanson, S.J, Harlan, J.E, Stoll, V.S, Stamper, G.F, Betz, S.F, Condroski, K.R, Meadows, R.P, Severin, J.M, Walter, K.A, Magdalinos, P, Jakob, C.G, Wagner, R, Beutel, B.A.
Deposit date:2004-07-29
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of potent inhibitors of dihydroneopterin aldolase using CrystaLEAD high-throughput X-ray crystallographic screening and structure-directed lead optimization.
J.MED.CHEM., 47, 2004
1KIR
DownloadVisualize
BU of 1kir by Molmil
FV MUTANT Y(A 50)S (VL DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME
Descriptor: LYSOZYME, MONOCLONAL ANTIBODY D1.3
Authors:Fields, B.A, Poljak, R.J, Mariuzza, R.A.
Deposit date:1996-10-23
Release date:1996-12-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme.
Biochemistry, 35, 1996
1U3O
DownloadVisualize
BU of 1u3o by Molmil
Solution structure of rat Kalirin N-terminal SH3 domain
Descriptor: Huntingtin-associated protein-interacting protein
Authors:Schiller, M.R, Chakrabarti, K, King, G.F, Schiller, N.I, Eipper, B.A, Maciejewski, M.W.
Deposit date:2004-07-22
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Regulation of RhoGEF Activity by Intramolecular and Intermolecular SH3 Domain Interactions.
J.Biol.Chem., 281, 2006
1TX9
DownloadVisualize
BU of 1tx9 by Molmil
gpd prior to capsid assembly
Descriptor: Scaffolding protein D
Authors:Morais, M.C, Fisher, M, Kanamaru, K, Fane, B.A, Rossmann, M.G.
Deposit date:2004-06-24
Release date:2005-04-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Conformational switching by the scaffolding protein D directs the assembly of bacteriophage phiX174
Mol.Cell, 15, 2004
1GQ0
DownloadVisualize
BU of 1gq0 by Molmil
Solution structure of Antiamoebin I, a membrane channel-forming polypeptide; NMR, 20 structures
Descriptor: ANTIAMOEBIN I
Authors:Galbraith, T.P, Harris, R, Driscoll, P.C, Wallace, B.A.
Deposit date:2001-11-16
Release date:2003-01-24
Last modified:2017-12-20
Method:SOLUTION NMR
Cite:Solution NMR studies of antiamoebin, a membrane channel-forming polypeptide.
Biophys. J., 84, 2003
1GJ4
DownloadVisualize
BU of 1gj4 by Molmil
SELECTIVITY AT S1, H2O DISPLACEMENT, UPA, TPA, SER190/ALA190 PROTEASE, STRUCTURE-BASED DRUG DESIGN
Descriptor: 6-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE, ACETYL HIRUDIN, SODIUM ION, ...
Authors:Katz, B.A, Sprengeler, P.A, Luong, C, Verner, E, Spencer, J.R, Breitenbucher, J.G, Hui, H, McGee, D, Allen, D, Martelli, A, Mackman, R.L.
Deposit date:2001-04-27
Release date:2002-04-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Engineering inhibitors highly selective for the S1 sites of Ser190 trypsin-like serine protease drug targets.
Chem.Biol., 8, 2001
1GJ5
DownloadVisualize
BU of 1gj5 by Molmil
SELECTIVITY AT S1, H2O DISPLACEMENT, UPA, TPA, SER190/ALA190 PROTEASE, STRUCTURE-BASED DRUG DESIGN
Descriptor: 2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE, ACETYL HIRUDIN, SODIUM ION, ...
Authors:Katz, B.A, Sprengeler, P.A, Luong, C, Verner, E, Spencer, J.R, Breitenbucher, J.G, Hui, H, McGee, D, Allen, D, Martelli, A, Mackman, R.L.
Deposit date:2001-04-27
Release date:2002-04-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Engineering inhibitors highly selective for the S1 sites of Ser190 trypsin-like serine protease drug targets.
Chem.Biol., 8, 2001
1GMK
DownloadVisualize
BU of 1gmk by Molmil
GRAMICIDIN/KSCN COMPLEX
Descriptor: GRAMICIDIN A, METHANOL, POTASSIUM ION, ...
Authors:Doyle, D.A, Wallace, B.A.
Deposit date:1996-07-09
Release date:1998-07-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Gramicidin/Potassium Thiocyanate Complex.
J.Mol.Biol., 266, 1997
1JCK
DownloadVisualize
BU of 1jck by Molmil
T-CELL RECEPTOR BETA CHAIN COMPLEXED WITH SEC3 SUPERANTIGEN
Descriptor: 14.3.D T CELL ANTIGEN RECEPTOR, STAPHYLOCOCCAL ENTEROTOXIN C3
Authors:Fields, B.A, Mariuzza, R.A.
Deposit date:1996-10-22
Release date:1997-11-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of a T-cell receptor beta-chain complexed with a superantigen.
Nature, 384, 1996
5J53
DownloadVisualize
BU of 5j53 by Molmil
The Structure and Mechanism of NOV1, a Resveratrol-Cleaving Dioxygenase
Descriptor: Carotenoid oxygenase, FE (III) ION, OXYGEN MOLECULE, ...
Authors:McAndrew, R.P, Pereira, J.H, Sathitsuksanoh, N, Sale, K.L, Simmons, B.A, Adams, P.D.
Deposit date:2016-04-01
Release date:2016-11-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2PFE
DownloadVisualize
BU of 2pfe by Molmil
Crystal Structure of Thermobifida fusca Protease A (TFPA)
Descriptor: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, Alkaline serine protease, GLYCEROL, ...
Authors:Kelch, B.A, Agard, D.A.
Deposit date:2007-04-04
Release date:2007-07-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.436 Å)
Cite:Mesophile versus Thermophile: Insights Into the Structural Mechanisms of Kinetic Stability
J.Mol.Biol., 370, 2007
8EBM
DownloadVisualize
BU of 8ebm by Molmil
Structure of KLHDC2 substrate binding domain bound to KLHDC2's C-degron mimic
Descriptor: ASN-GLN-ARG-PHE-GLY-SER-ASN-ASN-THR-SER-GLY-SER, Kelch domain-containing protein 2
Authors:Scott, D.C, Schulman, B.A.
Deposit date:2022-08-31
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
8EBN
DownloadVisualize
BU of 8ebn by Molmil
Structure of KLHDC2-EloB/C tetrameric assembly
Descriptor: Elongin-B, Elongin-C, Kelch domain-containing protein 2
Authors:Scott, D.C, Schulman, B.A.
Deposit date:2022-08-31
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
8EBL
DownloadVisualize
BU of 8ebl by Molmil
Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2
Descriptor: GLU-ASP-SER-HIS-LYS-GLU-SER-ASN-ASP-CYS-SER-CYS-GLY-GLY, Kelch domain-containing protein 2
Authors:Scott, D.C, Schulman, B.A.
Deposit date:2022-08-31
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
2PFV
DownloadVisualize
BU of 2pfv by Molmil
S. cerevisiae Exo70 with additional residues to 2.1 Angrstrom resolution
Descriptor: Exocyst complex component EXO70
Authors:Moore, B.A, Robinson, H.H, Xu, Z.
Deposit date:2007-04-05
Release date:2007-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of mouse Exo70 reveals unique features of the mammalian exocyst.
J.Mol.Biol., 371, 2007
2PFT
DownloadVisualize
BU of 2pft by Molmil
The Crystal Structure of Mouse Exo70 Reveals Unique Features of the Mammalian Exocyst
Descriptor: Exocytosis Protein
Authors:Moore, B.A, Xu, Z.
Deposit date:2007-04-05
Release date:2007-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The crystal structure of mouse Exo70 reveals unique features of the mammalian exocyst.
J.Mol.Biol., 371, 2007
7A8Y
DownloadVisualize
BU of 7a8y by Molmil
X-ray crystal structure of Aspartate alpha-decarboxylase in complex with D-Serine
Descriptor: 1,2-ETHANEDIOL, Aspartate 1-decarboxylase, D-SERINE, ...
Authors:Yorke, B.A, Raskar, T.
Deposit date:2020-08-31
Release date:2021-10-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and diffusive dynamics of aspartate alpha-decarboxylase (ADC) liganded with D-serine in aqueous solution.
Phys Chem Chem Phys, 2022
2QQO
DownloadVisualize
BU of 2qqo by Molmil
Crystal Structure of the a2b1b2 Domains from Human Neuropilin-2
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Appleton, B.A, Wiesmann, C.
Deposit date:2007-07-26
Release date:2007-11-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding
Embo J., 26, 2007
8EHO
DownloadVisualize
BU of 8eho by Molmil
PRRSV-1 PLP2 domain bound to ubiquitin
Descriptor: 3-AMINOPROPANE, GLYCEROL, NITRATE ION, ...
Authors:Bailey-Elkin, B.A, Mark, B.L.
Deposit date:2022-09-14
Release date:2023-12-06
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Demonstrating the importance of porcine reproductive and respiratory syndrome virus papain-like protease 2 deubiquitinating activity in viral replication by structure-guided mutagenesis.
Plos Pathog., 19, 2023
8EHN
DownloadVisualize
BU of 8ehn by Molmil
PRRSV-1 PLP2 domain
Descriptor: ACETATE ION, Papain-like protease 2, ZINC ION
Authors:Bailey-Elkin, B.A, Mark, B.L.
Deposit date:2022-09-14
Release date:2023-12-06
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Demonstrating the importance of porcine reproductive and respiratory syndrome virus papain-like protease 2 deubiquitinating activity in viral replication by structure-guided mutagenesis.
Plos Pathog., 19, 2023

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon