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PDB: 91 results

2C21
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BU of 2c21 by Molmil
Specificity of the Trypanothione-dependednt Leishmania major Glyoxalase I: Structure and biochemical comparison with the human enzyme
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, NICKEL (II) ION, ...
Authors:Ariza, A, Vickers, T.J, Greig, N, Armour, K.A, Eggleston, I.M, Fairlamb, A.H, Bond, C.S.
Deposit date:2005-09-23
Release date:2006-02-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Specificity of the Trypanothione-Dependent Leishmania Major Glyoxalase I: Structure and Biochemical Comparison with the Human Enzyme.
Mol.Microbiol., 59, 2006
2BKE
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BU of 2bke by Molmil
Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA
Descriptor: CHLORIDE ION, DNA REPAIR AND RECOMBINATION PROTEIN RADA
Authors:Ariza, A, Richard, D.L, White, M.F, Bond, C.S.
Deposit date:2005-02-15
Release date:2005-03-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal Rada
Nucleic Acids Res., 33, 2005
2YJQ
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BU of 2yjq by Molmil
Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CEL44C, ...
Authors:Ariza, A, Eklof, J.M, Spadiut, O, Offen, W.A, Roberts, S.M, Besenmatter, W, Friis, E.P, Skjot, M, Wilson, K.S, Brumer, H, Davies, G.
Deposit date:2011-05-23
Release date:2011-06-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure and Activity of Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44.
J.Biol.Chem., 286, 2011
2YKK
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BU of 2ykk by Molmil
Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CEL44C, ...
Authors:Ariza, A, Eklof, J.M, Spadiut, O, Offen, W.A, Roberts, S.M, Besenmatter, W, Friis, E.P, Skjot, M, Wilson, K.S, Brumer, H, Davies, G.
Deposit date:2011-05-27
Release date:2011-06-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structure and Activity of Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44.
J.Biol.Chem., 286, 2011
7AKR
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BU of 7akr by Molmil
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with ADP-ribose dimer
Descriptor: 1,2-ETHANEDIOL, ADP-ribose glycohydrolase ARH3, CHLORIDE ION, ...
Authors:Ariza, A.
Deposit date:2020-10-02
Release date:2021-06-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun, 12, 2021
7AKS
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BU of 7aks by Molmil
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with H2B-S7-mar peptide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADP-ribose glycohydrolase ARH3, ...
Authors:Ariza, A.
Deposit date:2020-10-02
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun, 12, 2021
8ADJ
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BU of 8adj by Molmil
Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster in complex with PARG inhibitor PDD00017272
Descriptor: 1-[(2,5-dimethylpyrazol-3-yl)methyl]-N-(1-methylcyclopropyl)-3-[(2-methyl-1,3-thiazol-5-yl)methyl]-2,4-bis(oxidanylidene)quinazoline-6-sulfonamide, CHLORIDE ION, GLYCEROL, ...
Authors:Ariza, A, Fontana, P.
Deposit date:2022-07-08
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.508 Å)
Cite:Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling.
Nat Commun, 14, 2023
8ADK
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BU of 8adk by Molmil
Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster
Descriptor: CHLORIDE ION, GLYCEROL, Poly(ADP-ribose) glycohydrolase, ...
Authors:Ariza, A, Fontana, P.
Deposit date:2022-07-08
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.474 Å)
Cite:Serine ADP-ribosylation in Drosophila provides insights into the evolution of reversible ADP-ribosylation signalling.
Nat Commun, 14, 2023
6TVH
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BU of 6tvh by Molmil
Selenomethionine-substituted HPF1 from Nematostella vectensis
Descriptor: Predicted protein
Authors:Ariza, A.
Deposit date:2020-01-09
Release date:2020-02-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Nature, 579, 2020
8RSM
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BU of 8rsm by Molmil
Crystal structure of Streptococcus pyogenes macrodomain in complex with ADP-ribose
Descriptor: Protein-ADP-ribose hydrolase, ZINC ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
8RSJ
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BU of 8rsj by Molmil
Crystal structure of Methanobrevibacter oralis macrodomain in complex with ADPr in open conformation
Descriptor: GLYCEROL, O-acetyl-ADP-ribose deacetylase, ZINC ION, ...
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
8RSI
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BU of 8rsi by Molmil
Crystal structure of Methanobrevibacter oralis macrodomain
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTAMIC ACID, ...
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
8RSN
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BU of 8rsn by Molmil
macrodomain-fused SirTM (Mfs1) from Fusarium oxysporum f. sp. cubense race 1
Descriptor: 1,2-ETHANEDIOL, ADP-ribose 1''-phosphate phosphatase, POTASSIUM ION, ...
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.219 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
8RSK
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BU of 8rsk by Molmil
Crystal structure of Methanobrevibacter oralis macrodomain in complex with Asn-ADPr
Descriptor: (2~{S})-4-[[(2~{S},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]amino]-2-azanyl-4-oxidanylidene-butanoic acid, ACETATE ION, GLYCEROL, ...
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.359 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
8RSL
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BU of 8rsl by Molmil
Crystal structure of Staphylococcus aureus macrodomain
Descriptor: Protein-ADP-ribose hydrolase, ZINC ION
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
6G1Q
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BU of 6g1q by Molmil
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with ADP-ribose
Descriptor: ADP-ribosylhydrolase like 2, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ariza, A.
Deposit date:2018-03-21
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
6G28
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BU of 6g28 by Molmil
Human [protein ADP-ribosylargenine] hydrolase ARH1 in complex with ADP-ribose
Descriptor: CHLORIDE ION, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE, ...
Authors:Ariza, A.
Deposit date:2018-03-22
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
7OMU
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BU of 7omu by Molmil
Thermosipho africanus DarTG in complex with ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Macro domain-containing protein
Authors:Ariza, A.
Deposit date:2021-05-24
Release date:2021-06-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Molecular basis for DarT ADP-ribosylation of a DNA base.
Nature, 596, 2021
8COB
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BU of 8cob by Molmil
Crystal structure of human PCNA in complex with ERCC6L2 PIP box peptide
Descriptor: DNA excision repair protein ERCC-6-like 2, Proliferating cell nuclear antigen
Authors:Ariza, A.
Deposit date:2023-02-27
Release date:2023-04-19
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:ERCC6L2 mitigates replication stress and promotes centromere stability.
Cell Rep, 42, 2023
5MLW
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BU of 5mlw by Molmil
Crystal structure of human PCNA in complex with ZRANB3 APIM motif peptide
Descriptor: APIM motif peptide, Proliferating cell nuclear antigen, SULFATE ION
Authors:Ariza, A.
Deposit date:2016-12-07
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural insights into the function of ZRANB3 in replication stress response.
Nat Commun, 8, 2017
5MLO
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BU of 5mlo by Molmil
Crystal structure of human PCNA in complex with ZRANB3 PIP box peptide
Descriptor: Proliferating cell nuclear antigen, SODIUM ION, ZRANB3 PIP box peptide
Authors:Ariza, A.
Deposit date:2016-12-07
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural insights into the function of ZRANB3 in replication stress response.
Nat Commun, 8, 2017
6HH5
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BU of 6hh5 by Molmil
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with ADP-HPM
Descriptor: ADP-ribosylhydrolase like 2, Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol, GLYCEROL, ...
Authors:Ariza, A.
Deposit date:2018-08-24
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
6HH3
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BU of 6hh3 by Molmil
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with ADP-HPD
Descriptor: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, ADP-ribosylhydrolase like 2, GLYCEROL, ...
Authors:Ariza, A.
Deposit date:2018-08-24
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
6HH6
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BU of 6hh6 by Molmil
Human poly(ADP-ribose) glycohydrolase in complex with ADP-HPM
Descriptor: Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol, Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Ariza, A.
Deposit date:2018-08-24
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
5M3I
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BU of 5m3i by Molmil
Macrodomain of Mycobacterium tuberculosis DarG
Descriptor: CHLORIDE ION, RNase III inhibitor
Authors:Ariza, A.
Deposit date:2016-10-14
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:The Toxin-Antitoxin System DarTG Catalyzes Reversible ADP-Ribosylation of DNA.
Mol. Cell, 64, 2016

 

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