Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 32 件
8JYR
DownloadVisualize
BU of 8jyr by Molmil
Crystal structure of anti-HER2 antibody H2Mab-119 in complex with HER2 domain I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, H2Mab-119 VH-CH1, H2Mab-119 light chain, ...
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 32, 2024
8JYQ
DownloadVisualize
BU of 8jyq by Molmil
Crystal structure of cancer-specific anti-HER2 antibody H2Mab-214 in complex with epitope peptide
分子名称: H2CasMab-1 VH(S112C),SARAH, H2CasMab-1 VL,SARAH(S37C), H2CasMab-1 epitope peptide
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 32, 2024
6LZ4
DownloadVisualize
BU of 6lz4 by Molmil
Crystal structure of PMab-1 Fv-clasp fragment with its antigen peptide
分子名称: MAP peptide, PMab-1 VH(S112C)-SARAH Chimera, PMab-1 VL-SARAH(S37C) Chimera
著者Arimori, T, Takagi, J.
登録日2020-02-18
公開日2020-05-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Site-specific epitope insertion into recombinant proteins using the MAP tag system.
J.Biochem., 168, 2020
3L85
DownloadVisualize
BU of 3l85 by Molmil
Crystal structure of human NUDT5 complexed with 8-oxo-dGMP
分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, ADP-sugar pyrophosphatase
著者Arimori, T, Yamagata, Y.
登録日2009-12-29
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011
3AC9
DownloadVisualize
BU of 3ac9 by Molmil
Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese
分子名称: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), ADP-sugar pyrophosphatase, MANGANESE (II) ION
著者Arimori, T, Yamagata, Y.
登録日2009-12-30
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011
3ACA
DownloadVisualize
BU of 3aca by Molmil
Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese
分子名称: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate, ADP-sugar pyrophosphatase, MANGANESE (II) ION
著者Arimori, T, Yamagata, Y.
登録日2009-12-30
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011
7DMU
DownloadVisualize
BU of 7dmu by Molmil
Structure of SARS-CoV-2 spike receptor-binding domain complexed with high affinity ACE2 mutant 3N39
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Arimori, T, Takagi, J.
登録日2020-12-07
公開日2020-12-23
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Engineered ACE2 receptor therapy overcomes mutational escape of SARS-CoV-2.
Nat Commun, 12, 2021
7CEC
DownloadVisualize
BU of 7cec by Molmil
Structure of alpha6beta1 integrin in complex with laminin-511
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Arimori, T, Miyazaki, N, Takagi, J.
登録日2020-06-22
公開日2021-06-23
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural mechanism of laminin recognition by integrin.
Nat Commun, 12, 2021
5GKR
DownloadVisualize
BU of 5gkr by Molmil
Crystal structure of SLE patient-derived anti-DNA antibody in complex with oligonucleotide
分子名称: DNA (5'-D(P*TP*TP*TP*T)-3'), IgG2, Fab (heavy chain), ...
著者Arimori, T, Sakakibara, S, Kikutani, H, Takagi, J.
登録日2016-07-05
公開日2017-07-05
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
5GKS
DownloadVisualize
BU of 5gks by Molmil
Crystal structure of SLE patient-derived anti-DNA antibody
分子名称: IgG2, Fab (heavy chain), PHOSPHATE ION, ...
著者Arimori, T, Sakakibara, S, Kikutani, H, Takagi, J.
登録日2016-07-05
公開日2017-07-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
Sci Rep, 7, 2017
7CEA
DownloadVisualize
BU of 7cea by Molmil
Crystal structure of HUTS-4 Fv-clasp fragment
分子名称: HUTS-4 VH(S112C)-SARAH, HUTS-4 VL(C87Y)-SARAH(S37C)
著者Arimori, T, Takagi, J.
登録日2020-06-22
公開日2021-06-23
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural mechanism of laminin recognition by integrin.
Nat Commun, 12, 2021
7CEB
DownloadVisualize
BU of 7ceb by Molmil
Crystal structure of alpha6beta1 integrin headpiece
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-6, ...
著者Arimori, T, Takagi, J.
登録日2020-06-22
公開日2021-06-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Structural mechanism of laminin recognition by integrin.
Nat Commun, 12, 2021
3W6E
DownloadVisualize
BU of 3w6e by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E162Q)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lysozyme-like chitinolytic enzyme
著者Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
登録日2013-02-14
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6D
DownloadVisualize
BU of 3w6d by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E141Q) in complex with tetrasaccharide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
著者Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
登録日2013-02-14
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6B
DownloadVisualize
BU of 3w6b by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471
分子名称: GLYCEROL, Lysozyme-like chitinolytic enzyme
著者Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
登録日2013-02-14
公開日2013-05-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6F
DownloadVisualize
BU of 3w6f by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E162Q) in complex with disaccharide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
著者Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
登録日2013-02-14
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6C
DownloadVisualize
BU of 3w6c by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 in complex with disaccharide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
著者Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
登録日2013-02-14
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3WC3
DownloadVisualize
BU of 3wc3 by Molmil
Crystal structure of endo-1,4-beta-glucanase from Eisenia fetida
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CITRATE ANION, ...
著者Arimori, T, Tamada, T.
登録日2013-05-24
公開日2013-10-30
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of endo-1,4-beta-glucanase from Eisenia fetida
J.SYNCHROTRON RADIAT., 20, 2013
5XCU
DownloadVisualize
BU of 5xcu by Molmil
Crystal structure of 12CA5 Fv-clasp fragment with its antigen peptide
分子名称: HA peptide, SULFATE ION, VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.454 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCT
DownloadVisualize
BU of 5xct by Molmil
Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide
分子名称: C8 peptide, CHLORIDE ION, VH(S112C)-SARAH chimera, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCV
DownloadVisualize
BU of 5xcv by Molmil
Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide
分子名称: CALCIUM ION, PA14 peptide, VH(S112C)-SARAH chimera,VH(S112C)-SARAH chimera, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.143 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCR
DownloadVisualize
BU of 5xcr by Molmil
Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide
分子名称: C8 peptide, VH-SARAH(Y35C) chimera, VL-SARAH(M24C) chimera
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCX
DownloadVisualize
BU of 5xcx by Molmil
Crystal structure of TS2/16 Fv-clasp fragment
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, PHOSPHATE ION, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCS
DownloadVisualize
BU of 5xcs by Molmil
Crystal structure of 12CA5 Fv-clasp fragment with its antigen peptide
分子名称: HA peptide, SULFATE ION, VH-SARAH(Y35C) chimera, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
5XCQ
DownloadVisualize
BU of 5xcq by Molmil
Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide
分子名称: C8 peptide, SULFATE ION, VH-SARAH(Y35C)chimera, ...
著者Arimori, T, Takagi, J.
登録日2017-03-23
公開日2017-10-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.313 Å)
主引用文献Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017

 

12>

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon