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PDB: 88608 results

6WBR
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BU of 6wbr by Molmil
Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM
Descriptor: CRISPR-associated endonuclease, Csn1 family,CRISPR-associated endonuclease, Csn1 family, ...
Authors:Li, H, Das, A.
Deposit date:2020-03-27
Release date:2020-11-18
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:The molecular basis for recognition of 5'-NNNCC-3' PAM and its methylation state by Acidothermus cellulolyticus Cas9.
Nat Commun, 11, 2020
3EMR
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BU of 3emr by Molmil
Crystal Structure Analysis of the ectoine hydroxylase ECTD from Salibacillus salexigens
Descriptor: EctD, FE (III) ION, GLYCEROL, ...
Authors:Reuter, K, Heine, A.
Deposit date:2008-09-25
Release date:2009-09-29
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Synthesis of 5-hydroxyectoine from ectoine: crystal structure of the non-heme iron(II) and 2-oxoglutarate-dependent dioxygenase EctD
Plos One, 5, 2010
2VEE
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BU of 2vee by Molmil
Structure of protoglobin from Methanosarcina acetivorans C2A
Descriptor: PROTOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nardini, M, Pesce, A, Thijs, L, Saito, J.A, Dewilde, S, Alam, M, Ascenzi, P, Coletta, M, Ciaccio, C, Moens, L, Bolognesi, M.
Deposit date:2007-10-22
Release date:2008-01-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Archaeal Protoglobin Structure Indicates New Ligand Diffusion Paths and Modulation of Haem-Reactivity.
Embo Rep., 9, 2008
5D7Y
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BU of 5d7y by Molmil
Crystal structure of Hepatitis B virus T=4 capsid in complex with the allosteric modulator HAP18
Descriptor: Capsid protein, methyl (4R)-4-(2-chloro-4-fluorophenyl)-6-{[4-(3-hydroxypenta-1,4-diyn-3-yl)piperidin-1-yl]methyl}-2-(pyridin-2-yl)-1,4-dihydropyrimidine-5-carboxylate
Authors:Venkatakrishnan, B, Katen, S.P, Zlotnick, A.
Deposit date:2015-08-14
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.894 Å)
Cite:Hepatitis B Virus Capsids Have Diverse Structural Responses to Small-Molecule Ligands Bound to the Heteroaryldihydropyrimidine Pocket.
J.Virol., 90, 2016
2UYL
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BU of 2uyl by Molmil
Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1
Descriptor: MONOCLONAL ANTIBODY F-22-30
Authors:Ahmed, F, Haouz, A, Nato, F, Fournier, J.M, Alzari, P.M.
Deposit date:2007-04-10
Release date:2008-05-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Monoclonal Antibody Directed Against an Antigenic Determinant Common to Ogawa and Inaba Serotypes of Vibrio Cholerae O1.
Proteins, 70, 2008
5KBK
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BU of 5kbk by Molmil
Candida Albicans Superoxide Dismutase 5 (SOD5), E110A Mutant
Descriptor: COPPER (I) ION, Cell surface Cu-only superoxide dismutase 5, SULFATE ION
Authors:Galaleldeen, A, Peterson, R.L, Villarreal, J, Taylor, A.B, Hart, P.J.
Deposit date:2016-06-03
Release date:2016-08-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.411 Å)
Cite:The Phylogeny and Active Site Design of Eukaryotic Copper-only Superoxide Dismutases.
J.Biol.Chem., 291, 2016
6PHW
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BU of 6phw by Molmil
SpAga D472N structure in complex with melibiose
Descriptor: 1,2-ETHANEDIOL, Alpha-galactosidase, L(+)-TARTARIC ACID, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-06-25
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system.
J.Biol.Chem., 294, 2019
3WBJ
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BU of 3wbj by Molmil
Crystal structure analysis of eukaryotic translation initiation factor 5B structure II
Descriptor: Eukaryotic translation initiation factor 5B
Authors:Zheng, A, Yamamoto, R, Ose, T, Yu, J, Tanaka, I, Yao, M.
Deposit date:2013-05-20
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.495 Å)
Cite:X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A
Acta Crystallogr.,Sect.D, 70, 2014
2UV3
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BU of 2uv3 by Molmil
Structure of the signal-regulatory protein (SIRP) alpha domain that binds CD47.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE SUBSTRATE 1
Authors:Hatherley, D, Harlos, K, Dunlop, D.C, Stuart, D.I, Barclay, A.N.
Deposit date:2007-03-08
Release date:2007-03-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of the Macrophage Signal Regulatory Protein Alpha (Sirpalpha) Inhibitory Receptor Reveals a Binding Face Reminiscent of that Used by T Cell Receptors.
J.Biol.Chem., 282, 2007
7B70
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BU of 7b70 by Molmil
TRAPPCore plus C8 (355-596) and C11 (1-718) from MiniTRAPPIII
Descriptor: FI18195p1, GEO08327p1, Probable trafficking protein particle complex subunit 2, ...
Authors:Galindo, A, Munro, S, Planelles-Herrero, V.J.
Deposit date:2020-12-09
Release date:2021-06-09
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1.
Embo J., 40, 2021
5KE3
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BU of 5ke3 by Molmil
Crystal structure of SETDB1 Tudor domain in complex with fragment MRT0181a
Descriptor: (S)-N-(furan-2-ylmethyl)-1-(1,2,3,4-tetrahydroisoquinoline-3-carbonyl)piperidine-4-carboxamide, BETA-MERCAPTOETHANOL, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Dong, A, Iqbal, A, Mader, P, Dobrovetsky, E, Ferreira de Freitas, R, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Schapira, M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2016-06-09
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of SETDB1 Tudor domain in complex with fragment MRT0181a
to be published
8PU1
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BU of 8pu1 by Molmil
Structure of the toxin/antitoxin complex FaRel/ATfaRel2 with APCPP
Descriptor: ATfaRel2, CACODYLATE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Structure of the toxin/antitoxin complex FaRel/ATfaRel2 with APCPP
To Be Published
8PU4
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BU of 8pu4 by Molmil
FaRel2 bound to the ATP analogue, APCPP
Descriptor: MAGNESIUM ION, RelA/SpoT domain-containing protein, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
Authors:Garcia-Pino, A, Talavera Perez, A, Dominguez Molina, L.
Deposit date:2023-07-16
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:FaRel2 bound to the ATP analogue, APCPP
To Be Published
4ICN
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BU of 4icn by Molmil
Dihydrodipicolinate synthase from shewanella benthica
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, DIHYDRODIPICOLINATE SYNTHASE, ...
Authors:Wubben, J.M, Paxman, J.J, Dogovski, C, Parker, M.W, Perugini, M.A.
Deposit date:2012-12-10
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Cold enzymology offers insight into molecular evolution in quaternary structure
To be Published
7AKR
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BU of 7akr by Molmil
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with ADP-ribose dimer
Descriptor: 1,2-ETHANEDIOL, ADP-ribose glycohydrolase ARH3, CHLORIDE ION, ...
Authors:Ariza, A.
Deposit date:2020-10-02
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun, 12, 2021
4IEC
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BU of 4iec by Molmil
Cys105 covalent modification by 2-hydroxyethyl disulfide in Mycobacterium tuberculosis methionine aminopeptidase Type 1c
Descriptor: COBALT (II) ION, Methionine aminopeptidase 2, POTASSIUM ION
Authors:Reddi, R, Gumpena, R, Kishor, C, Addlagatta, A.
Deposit date:2012-12-13
Release date:2013-12-18
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Selective targeting of the conserved active site cysteine of Mycobacterium tuberculosis methionine aminopeptidase with electrophilic reagents
Febs J., 281, 2014
5JQX
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BU of 5jqx by Molmil
Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with phosphoglyceric acid (PGA) - GpgS*PGA
Descriptor: 3-PHOSPHOGLYCERIC ACID, Glucosyl-3-phosphoglycerate synthase
Authors:Albesa-Jove, D, Sancho-Vaello, E, Rodrigo-Unzueta, A, Comino, N, Carreras-Gonzalez, A, Arrasate, P, Urresti, S, Guerin, M.E.
Deposit date:2016-05-05
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural Snapshots and Loop Dynamics along the Catalytic Cycle of Glycosyltransferase GpgS.
Structure, 25, 2017
7AKS
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BU of 7aks by Molmil
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with H2B-S7-mar peptide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADP-ribose glycohydrolase ARH3, ...
Authors:Ariza, A.
Deposit date:2020-10-02
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun, 12, 2021
2HZH
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BU of 2hzh by Molmil
Crystal structure of laccase from Coriolus zonatus at 2.6 A resolution
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ...
Authors:Lyashenko, A.V, Mikhailov, A.M.
Deposit date:2006-08-09
Release date:2007-08-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of laccase from Coriolus zonatus at 2.6 A resolution
To be published
2V28
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BU of 2v28 by Molmil
Apo structure of the cold active phenylalanine hydroxylase from Colwellia psychrerythraea 34H
Descriptor: PHENYLALANINE-4-HYDROXYLASE, SULFATE ION
Authors:Leiros, H.-K.S, Pey, A.L, Innselset, M, Moe, E, Leiros, I, Steen, I.H, Martinez, A.
Deposit date:2007-06-04
Release date:2007-06-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of Phenylalanine Hydroxylase from Colwellia Psychrerythraea 34H, a Monomeric Cold Active Enzyme with Local Flexibility Around the Active Site and High Overall Stability.
J.Biol.Chem., 282, 2007
5JSR
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BU of 5jsr by Molmil
New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ
Descriptor: ACRYLIC ACID, BROMIDE ION, CHLORIDE ION, ...
Authors:Brummett, A.E, Dey, M.
Deposit date:2016-05-09
Release date:2017-02-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
Biochemistry, 55, 2016
6PHY
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BU of 6phy by Molmil
SpAga D472N structure in complex alpha 1,3 galactobiose
Descriptor: 1,2-ETHANEDIOL, Alpha-galactosidase, L(+)-TARTARIC ACID, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-06-25
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system.
J.Biol.Chem., 294, 2019
7ASI
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BU of 7asi by Molmil
Fixed-target serial femtosecond crystallography using in cellulo grown Neurospora crassa HEX-1 microcrystals. (Chips 1+2)
Descriptor: eIF-5a domain-containing protein
Authors:Lahey-Rudolph, J.M, Schoenherr, R, Barthelmess, M, Fischer, P, Seuring, C, Wagner, A, Meents, A, Redecke, L.
Deposit date:2020-10-27
Release date:2021-06-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Fixed-target serial femtosecond crystallography using in cellulo grown microcrystals.
Iucrj, 8, 2021
2HXR
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BU of 2hxr by Molmil
Structure of the ligand binding domain of E. coli CynR, a transcriptional regulator controlling cyanate metabolism
Descriptor: HTH-type transcriptional regulator cynR
Authors:Singer, A.U, Cuff, M.E, Evdokimova, E, Kagan, O, Joachimiak, A, Edwards, A.M, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-08-03
Release date:2006-08-22
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of CynR, a transcriptional regulator, both in the presence and absence of sodium azide, its activator ligand
To be Published
4IBP
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BU of 4ibp by Molmil
Crystal structure of a glutathione transferase family member from Pseudomonas fluorescens Pf-5, target EFI-900011, with bound glutathione
Descriptor: GLUTATHIONE, Glutathione S-transferase-like protein YibF, SULFATE ION
Authors:Vetting, M.W, Sauder, J.M, Morisco, L.L, Wasserman, S.R, Sojitra, S, Imker, H.J, Burley, S.K, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-12-09
Release date:2012-12-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a glutathione transferase family member from Pseudomonas fluorescens Pf-5, target IFI-900011, with bound glutathione
To be Published

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數據於2024-07-24公開中

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