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PDB: 89035 results

6TC3
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BU of 6tc3 by Molmil
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Innis, C.A, Herrero del Valle, A.
Deposit date:2019-11-05
Release date:2020-01-01
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Ornithine capture by a translating ribosome controls bacterial polyamine synthesis.
Nat Microbiol, 5, 2020
6TBV
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BU of 6tbv by Molmil
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Herrero del Valle, A, Innis, C.A.
Deposit date:2019-11-04
Release date:2020-01-01
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Ornithine capture by a translating ribosome controls bacterial polyamine synthesis.
Nat Microbiol, 5, 2020
6QUE
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BU of 6que by Molmil
Structure of ovine transhydrogenase in the presence of NADP+ in a "single face-down" conformation
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Nicotinamide nucleotide transhydrogenase
Authors:Kampjut, D, Sazanov, L.A.
Deposit date:2019-02-27
Release date:2019-08-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure and mechanism of mitochondrial proton-translocating transhydrogenase.
Nature, 573, 2019
5NKT
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BU of 5nkt by Molmil
FimA wt from E. coli
Descriptor: SULFATE ION, Type-1 fimbrial protein, A chain
Authors:Zyla, D, Capitani, G, Prota, A, Glockshuber, R.
Deposit date:2017-04-03
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Alternative folding to a monomer or homopolymer is a common feature of the type 1 pilus subunit FimA from enteroinvasive bacteria.
J.Biol.Chem., 2019
8QB9
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BU of 8qb9 by Molmil
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Descriptor: Sphingolipid long chain base-responsive protein PIL1
Authors:Kefauver, J.M, Zou, L, Desfosses, A, Loewith, R.J.
Deposit date:2023-08-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain.
Nature, 632, 2024
7USB
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BU of 7usb by Molmil
CCoV-HuPn-2018 S in the swung out conformation (local refinement of domain 0)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Tortorici, M.A, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-23
Release date:2022-08-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein.
Cell, 185, 2022
5NMD
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BU of 5nmd by Molmil
868 TCR Specific for HLA A02 presenting HIV Epitope SLYNTVATL
Descriptor: 1,2-ETHANEDIOL, Human T-cell Receptor, beta chain, ...
Authors:Rizkallah, P.J, Cole, D.K, Fuller, A, Sewell, A.K.
Deposit date:2017-04-05
Release date:2017-11-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Dual Molecular Mechanisms Govern Escape at Immunodominant HLA A2-Restricted HIV Epitope.
Front Immunol, 8, 2017
6QZR
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BU of 6qzr by Molmil
14-3-3 sigma in complex with FOXO1 pT24 peptide
Descriptor: 14-3-3 protein sigma, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Forkhead box protein O1, ...
Authors:Ottmann, C, Wolter, M, Lau, R.A.
Deposit date:2019-03-12
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:AMPK and AKT protein kinases hierarchically phosphorylate the N-terminus of the FOXO1 transcription factor, modulating interactions with 14-3-3 proteins.
J.Biol.Chem., 294, 2019
7US9
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BU of 7us9 by Molmil
CCoV-HuPn-2018 S in the proximal conformation (local refinement of domain 0)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Tortorici, M.A, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-23
Release date:2022-08-24
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein.
Cell, 185, 2022
8RJ9
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BU of 8rj9 by Molmil
E. coli adenylate kinase Asp84Ala variant in complex with two ADP molecules as a result of enzymatic AP4A hydrolysis.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase
Authors:Tischlik, S, Ronge, P, Wolf-Watz, M, Sauer-Eriksson, A.E.
Deposit date:2023-12-20
Release date:2024-07-10
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Magnesium induced structural reorganization in the active site of adenylate kinase.
Sci Adv, 10, 2024
5NOA
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BU of 5noa by Molmil
Polysaccharide Lyase BACCELL_00875
Descriptor: Family 88 glycosyl hydrolase
Authors:Cartmell, A, Munoz-Munoz, J, Terrapon, N, Basle, A, Henrissat, B, Gilbert, H.J.
Deposit date:2017-04-11
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins.
J. Biol. Chem., 292, 2017
6OP6
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BU of 6op6 by Molmil
Structure of VIM-20 in the reduced state
Descriptor: Metallo-beta-lactamase VIM-20, SODIUM ION, ZINC ION
Authors:Page, R.C, Shurina, B.A, Montgomery, J.S, Orischak, M.G, Nix, J.C.
Deposit date:2019-04-24
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Single Salt Bridge in VIM-20 Increases Protein Stability and Antibiotic Resistance under Low-Zinc Conditions.
Mbio, 10, 2019
8R5W
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BU of 8r5w by Molmil
Crystal structure of the three anaphylatoxin-like modules in fibulin-2
Descriptor: Fibulin-2
Authors:Sohail, A.A, Koski, M.K, Ruddock, L.W.
Deposit date:2023-11-18
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biophysical and structural studies of fibulin-2.
Sci Rep, 14, 2024
6QMO
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BU of 6qmo by Molmil
Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289E and S308A mutations
Descriptor: CHLORIDE ION, Death-associated protein kinase 1, GLYCEROL, ...
Authors:Huart, A.-S, Wilmanns, M.
Deposit date:2019-02-07
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Molecular mechanisms behind DAPK regulation: how phosphorylation switches work
To Be Published
5NOK
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BU of 5nok by Molmil
Polysaccharide Lyase BACCELL_00875
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BACCELL_00875
Authors:Cartmell, A, Munoz-Munoz, J, Terrapon, N, Basle, A, Henrissat, B, Gilbert, H.J.
Deposit date:2017-04-12
Release date:2017-06-28
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins.
J. Biol. Chem., 292, 2017
6OPO
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BU of 6opo by Molmil
Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM
Descriptor: 17b Fab heavy chain, 17b Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2019-04-25
Release date:2020-10-21
Last modified:2020-12-09
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A Strain-Specific Inhibitor of Receptor-Bound HIV-1 Targets a Pocket near the Fusion Peptide.
Cell Rep, 33, 2020
7UHM
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BU of 7uhm by Molmil
Time-Resolved Structure of Metallo Beta-Lactamase L1 in a Complex with Cleaved Moxalactam (150 ms Snapshot)
Descriptor: (2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid, Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase), ZINC ION
Authors:Wilamowski, M, Kim, Y, Sherrell, D.A, Lavens, A, Henning, R, Maltseva, N, Endres, M, Babnigg, G, Srajer, V, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-03-27
Release date:2022-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Time-resolved beta-lactam cleavage by L1 metallo-beta-lactamase.
Nat Commun, 13, 2022
5NEM
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BU of 5nem by Molmil
Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Integrin alpha-V, ...
Authors:Kotecha, A, Stuart, D.
Deposit date:2017-03-10
Release date:2017-06-21
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun, 8, 2017
7UM3
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BU of 7um3 by Molmil
Crystal structure of a Fab in complex with a peptide derived from the LAG-3 D1 domain loop insertion
Descriptor: D1 domain loop peptide from Lymphocyte activation gene 3 protein, Fab heavy chain, Fab light chain
Authors:Zorn, J.A, Lee, P.S, Rajpal, A, Strop, P.
Deposit date:2022-04-06
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3983 Å)
Cite:Preclinical Characterization of Relatlimab, a Human LAG-3-Blocking Antibody, Alone or in Combination with Nivolumab.
Cancer Immunol Res, 10, 2022
5JUO
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BU of 5juo by Molmil
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal RNA, ...
Authors:Abeyrathne, P, Koh, C.S, Grant, T, Grigorieff, N, Korostelev, A.A.
Deposit date:2016-05-10
Release date:2016-10-05
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome.
Elife, 5, 2016
5NFR
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BU of 5nfr by Molmil
Crystal structure of malate dehydrogenase from Plasmodium falciparum (PfMDH)
Descriptor: CITRIC ACID, Malate dehydrogenase
Authors:Lunev, S, Romero, A.R, Batista, F.A, Wrenger, C, Groves, M.R.
Deposit date:2017-03-15
Release date:2018-01-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Oligomeric interfaces as a tool in drug discovery: Specific interference with activity of malate dehydrogenase of Plasmodium falciparum in vitro.
PLoS ONE, 13, 2018
6O9S
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BU of 6o9s by Molmil
Crystal structure of Staphylococcus aureus MecR1 antibiotic-sensor domain in complex with avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Methicillin resistance mecR1 protein, SULFATE ION
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2019-03-14
Release date:2020-06-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural analysis of avibactam-mediated activation of the bla and mec divergons in methicillin-resistant Staphylococcus aureus .
J.Biol.Chem., 295, 2020
5NRE
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BU of 5nre by Molmil
A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - a3GalT in complex with lactose - a3GalT-LAT
Descriptor: N-acetyllactosaminide alpha-1,3-galactosyltransferase, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Albesa-Jove, D, Marina, A, Sainz-Polo, M.A, Guerin, M.E.
Deposit date:2017-04-22
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Snapshots of alpha-1,3-Galactosyltransferase with Native Substrates: Insight into the Catalytic Mechanism of Retaining Glycosyltransferases.
Angew. Chem. Int. Ed. Engl., 56, 2017
5NI5
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BU of 5ni5 by Molmil
Ligand complex of RORg LBD
Descriptor: Nuclear receptor ROR-gamma, SODIUM ION, tethered SRC2-2 peptide, ...
Authors:Xue, Y, Aagaard, A, Narjes, F.
Deposit date:2017-03-23
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent and Orally Bioavailable Inverse Agonists of ROR gamma t Resulting from Structure-Based Design.
J. Med. Chem., 61, 2018
5NI8
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BU of 5ni8 by Molmil
Ligand complex of RORg LBD
Descriptor: 2-(4-ethylsulfonylphenyl)-~{N}-[4-(2-phenylmethoxypyridin-3-yl)thiophen-2-yl]ethanamide, Nuclear receptor ROR-gamma, SODIUM ION, ...
Authors:Xue, Y, Aagaard, A, Narjes, F.
Deposit date:2017-03-23
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Potent and Orally Bioavailable Inverse Agonists of ROR gamma t Resulting from Structure-Based Design.
J. Med. Chem., 61, 2018

224572

数据于2024-09-04公开中

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