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PDB: 89035 results

8S8C
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BU of 8s8c by Molmil
Structure of Kras in complex with inhibitor MK-1084
Descriptor: (5aSa,17aRa)- 20-Chloro-2-[(2S,5R)-2,5-dimethyl-4-(prop-2-enoyl)piperazin-1-yl]-14,17-difluoro-6-(propan-2-yl)-11,12-dihydro-4H-1,18-(ethanediylidene)pyrido[4,3-e]pyrimido[1,6-g][1,4,7,9]benzodioxadiazacyclododecin-4-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Day, P.J, Cleasby, A.
Deposit date:2024-03-06
Release date:2024-07-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of MK-1084: An Orally Bioavailable and Low-Dose KRAS G12C Inhibitor.
J.Med.Chem., 67, 2024
5LF4
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BU of 5lf4 by Molmil
Human 20S proteasome complex with Delanzomib at 2.0 Angstrom
Descriptor: CHLORIDE ION, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Schrader, J, Henneberg, F, Mata, R, Tittmann, K, Schneider, T.R, Stark, H, Bourenkov, G, Chari, A.
Deposit date:2016-06-30
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Science, 353, 2016
6RFE
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BU of 6rfe by Molmil
Human protein kinase CK2 alpha in complex with 2-cyano-2-propenamide compound 4
Descriptor: (~{E})-~{N}-(5-bromanyl-1,3,4-thiadiazol-2-yl)-2-cyano-3-(3-methoxy-4-oxidanyl-phenyl)prop-2-enamide, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ...
Authors:Dalle Vedove, A, Zanforlin, E, Ribaudo, G, Zagotto, G, Battistutta, R, Lolli, G.
Deposit date:2019-04-13
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:A novel class of selective CK2 inhibitors targeting its open hinge conformation.
Eur.J.Med.Chem., 195, 2020
8RSV
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BU of 8rsv by Molmil
Rap from bacteriophage Phi3T in presence of pheromone RRGHTAS
Descriptor: Glycerol ethoxylate, Pheromone RRGHTAS, Rap3T
Authors:Felipe-Ruiz, A, Zamora-Caballero, S, Marina, A.
Deposit date:2024-01-25
Release date:2024-07-24
Last modified:2024-08-28
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing.
Plos Biol., 22, 2024
4X53
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BU of 4x53 by Molmil
Structure of the class D Beta-Lactamase OXA-160 V130D in Acyl-Enzyme Complex with Aztreonam
Descriptor: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, BICARBONATE ION, Class D beta-lactamase OXA-160
Authors:Clasman, J.R, June, C.M, Powers, R.A, Leonard, D.A.
Deposit date:2014-12-04
Release date:2015-03-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Activity against Aztreonam and Extended Spectrum Cephalosporins for Two Carbapenem-Hydrolyzing Class D beta-Lactamases from Acinetobacter baumannii.
Biochemistry, 54, 2015
4X56
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BU of 4x56 by Molmil
Structure of the class D Beta-Lactamase OXA-160 V130D in Acyl-Enzyme Complex with Ceftazidime
Descriptor: ACYLATED CEFTAZIDIME, Class D beta-lactamase OXA-160
Authors:Clasman, J.R, June, C.M, Powers, R.A, Leonard, D.A.
Deposit date:2014-12-04
Release date:2015-03-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural Basis of Activity against Aztreonam and Extended Spectrum Cephalosporins for Two Carbapenem-Hydrolyzing Class D beta-Lactamases from Acinetobacter baumannii.
Biochemistry, 54, 2015
5LHX
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BU of 5lhx by Molmil
PB3 Domain of Drosophila melanogaster PLK4 (Sak)
Descriptor: Serine/threonine-protein kinase PLK4
Authors:Cottee, M.A, Lea, S.M.
Deposit date:2016-07-13
Release date:2017-03-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:A key centriole assembly interaction interface between human PLK4 and STIL appears to not be conserved in flies.
Biol Open, 6, 2017
4WWY
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BU of 4wwy by Molmil
human cationic trypsin G193R mutant in complex with bovine pancreatic trypsin inhibitor
Descriptor: CALCIUM ION, Pancreatic trypsin inhibitor, SULFATE ION, ...
Authors:Alloy, A, Kayode, O, Soares, A.S, Wang, R, Radisky, E.S.
Deposit date:2014-11-12
Release date:2015-07-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mesotrypsin Has Evolved Four Unique Residues to Cleave Trypsin Inhibitors as Substrates.
J.Biol.Chem., 290, 2015
6EFU
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BU of 6efu by Molmil
Crystal structure of the double mutant L167W / P172L of the beta-glucosidase from Trichoderma harzianum
Descriptor: Beta-glucosidase, NITRATE ION
Authors:Morais, M.A.B, Santos, C.A, Tonoli, C.C.C, Souza, A.P, Murakami, M.T.
Deposit date:2018-08-17
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An engineered GH1 beta-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials.
Sci Rep, 9, 2019
8RLJ
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BU of 8rlj by Molmil
Structure of the apo form of PIB-1 in an Orthorombic space group
Descriptor: Class C beta-lactamase-related serine hydrolase
Authors:Medrano, F.J, Romero, A.
Deposit date:2024-01-03
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A new type of Class C beta-lactamases defined by PIB-1. A metal-dependent carbapenem-hydrolyzing beta-lactamase, from Pseudomonas aeruginosa: Structural and functional analysis.
Int.J.Biol.Macromol., 2024
6EDS
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BU of 6eds by Molmil
Structure of Cysteine-free Human Insulin-Degrading Enzyme in complex with Glucagon and Substrate-selective Macrocyclic Inhibitor 63
Descriptor: 1,4-DIETHYLENE DIOXIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Tan, G.A, Seeliger, M.A, Maianti, J.P, Liu, D.R, Welsh, A.J.
Deposit date:2018-08-10
Release date:2019-04-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.18071723 Å)
Cite:Substrate-selective inhibitors that reprogram the activity of insulin-degrading enzyme.
Nat.Chem.Biol., 15, 2019
7S38
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BU of 7s38 by Molmil
Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, Non-target DNA strand, Single-guide RNA, ...
Authors:Cofsky, J.C, Soczek, K.M, Knott, G.J, Nogales, E, Doudna, J.A.
Deposit date:2021-09-04
Release date:2022-04-20
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:CRISPR-Cas9 bends and twists DNA to read its sequence.
Nat.Struct.Mol.Biol., 29, 2022
8RLL
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BU of 8rll by Molmil
Structure of the apo form of PIB-1 in an Orthorombic space group
Descriptor: Class C beta-lactamase-related serine hydrolase
Authors:Medrano, F.J, Romero, A.
Deposit date:2024-01-03
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A new type of Class C beta-lactamases defined by PIB-1. A metal-dependent carbapenem-hydrolyzing beta-lactamase, from Pseudomonas aeruginosa: Structural and functional analysis.
Int.J.Biol.Macromol., 2024
8RLK
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BU of 8rlk by Molmil
Structure of the apo form of PIB-1 in an Orthorombic space group
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Class C beta-lactamase-related serine hydrolase, MAGNESIUM ION, ...
Authors:Medrano, F.J, Romero, A.
Deposit date:2024-01-03
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:A new type of Class C beta-lactamases defined by PIB-1. A metal-dependent carbapenem-hydrolyzing beta-lactamase, from Pseudomonas aeruginosa: Structural and functional analysis.
Int.J.Biol.Macromol., 2024
5LLL
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BU of 5lll by Molmil
Crystal structure of DACM wild type Transthyretin
Descriptor: Transthyretin
Authors:Sala, B.M, Ghadami, S.A, Bemporad, F, Chiti, F, Ricagno, S.
Deposit date:2016-07-27
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:FRET studies of various conformational states adopted by transthyretin.
Cell. Mol. Life Sci., 74, 2017
6M9S
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BU of 6m9s by Molmil
Crystal structure of SeMet SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697
Descriptor: FE (III) ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Rohac, R, Mitchell, A.J, Boal, A.K.
Deposit date:2018-08-24
Release date:2019-02-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:An N-nitrosating metalloenzyme constructs the pharmacophore of streptozotocin.
Nature, 566, 2019
9B7E
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BU of 9b7e by Molmil
S_SAD structure of HEWL using lossy compression data with a compression ratio of 422
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Jakoncic, J, Bernstein, H.J, Soares, A.S, Horvat, K.
Deposit date:2024-03-27
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Investigation of fast and efficient lossless compression algorithms for macromolecular crystallography experiments
To Be Published
6RVZ
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BU of 6rvz by Molmil
Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase, in complex with adenosine-2',3'-vanadate
Descriptor: ADENOSINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Kroupova, A, Jinek, M.
Deposit date:2019-06-03
Release date:2020-05-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity.
Science, 369, 2020
8P97
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BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
6ZPL
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BU of 6zpl by Molmil
Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions.
Descriptor: CHLORIDE ION, Endoglucanase H, SODIUM ION, ...
Authors:Shahsavar, A, Stohler, P, Bourenkov, G, Zimmermann, I, Siegrist, M, Guba, W, Pinard, E, Sinning, S, Seeger, M.A, Schneider, T.R, Dawson, R.J.P, Nissen, P.
Deposit date:2020-07-08
Release date:2021-03-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.945 Å)
Cite:Structural insights into the inhibition of glycine reuptake.
Nature, 591, 2021
6OF0
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BU of 6of0 by Molmil
Structural basis for multidrug recognition and antimicrobial resistance by MTRR, an efflux pump regulator from Neisseria Gonorrhoeae
Descriptor: HTH-type transcriptional regulator MtrR, PHOSPHATE ION
Authors:Beggs, G.A, Kumaraswami, M, Shafer, W, Brennan, R.G.
Deposit date:2019-03-28
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural, Biochemical, and In Vivo Characterization of MtrR-Mediated Resistance to Innate Antimicrobials by the Human Pathogen Neisseria gonorrhoeae .
J.Bacteriol., 201, 2019
7SIZ
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BU of 7siz by Molmil
C-type inactivation in a voltage gated K+ channel
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, POTASSIUM ION, Voltage gated potassium channel Kv1.2-Kv2.1, ...
Authors:Reddi, R, Riederer, E.A, Matulef, K, Whorton, M.R, Valiyaveetil, F.I.
Deposit date:2021-10-15
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for C-type inactivation in a Shaker family voltage-gated K + channel.
Sci Adv, 8, 2022
6ZM0
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BU of 6zm0 by Molmil
Crystal structure of MreC from Pseudomonas aeruginosa
Descriptor: CHLORIDE ION, Cell shape-determining protein MreC, MAGNESIUM ION
Authors:Contreras-Martel, C, Dessen, A, Trindade, D.M.
Deposit date:2020-07-01
Release date:2021-03-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.471 Å)
Cite:Self-association of MreC as a regulatory signal in bacterial cell wall elongation.
Nat Commun, 12, 2021
5LNK
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BU of 5lnk by Molmil
Entire ovine respiratory complex I
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, 4'-PHOSPHOPANTETHEINE, ...
Authors:Fiedorczuk, K, Letts, J.A, Kaszuba, K, Sazanov, L.A.
Deposit date:2016-08-04
Release date:2016-11-23
Last modified:2021-06-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Atomic structure of the entire mammalian mitochondrial complex I.
Nature, 538, 2016
8SZP
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BU of 8szp by Molmil
Human DHX9 bound to ADP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase A, ...
Authors:Lee, Y.-T, Sickmier, E.A, Grigoriu, S, Boriack-Sjodin, P.A.
Deposit date:2023-05-30
Release date:2023-08-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Crystal structures of the DExH-box RNA helicase DHX9.
Acta Crystallogr D Struct Biol, 79, 2023

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