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PDB: 89472 results

8D41
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Crystal structure of the human COPB2 WD-domain in complex with OICR-6254
Descriptor: (1R,2R,3S,4S)-3-[4-(4-fluorophenyl)piperazine-1-carbonyl]bicyclo[2.2.1]heptane-2-carboxylic acid, Coatomer subunit beta', GLYCEROL, ...
Authors:Zeng, H, Saraon, P, Dong, A, Hutchinson, A, Seitova, A, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2022-06-01
Release date:2022-07-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the human COPB2 WD-domain in complex with OICR-6254
To Be Published
6B0L
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BU of 6b0l by Molmil
KLP10A-AMPPNP in complex with a microtubule
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-like protein Klp10A, ...
Authors:Benoit, M.P.M.H, Asenjo, A.B, Sosa, H.
Deposit date:2017-09-14
Release date:2018-05-02
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Cryo-EM reveals the structural basis of microtubule depolymerization by kinesin-13s.
Nat Commun, 9, 2018
7SR4
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BU of 7sr4 by Molmil
Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPETTDLYC
Descriptor: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH
Authors:Finton, K.A.K, Rupert, P.B.
Deposit date:2021-11-07
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Effects of HLA single chain trimer design on peptide presentation and stability.
Front Immunol, 14, 2023
1TTL
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BU of 1ttl by Molmil
Omega-conotoxin GVIA, a N-type calcium channel blocker
Descriptor: Omega-conotoxin GVIA
Authors:Mould, J, Yasuda, T, Schroeder, C.I, Beedle, A.M, Doering, C.J, Zamponi, G.W, Adams, D.J, Lewis, R.J.
Deposit date:2004-06-23
Release date:2004-07-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The alpha2delta auxiliary subunit reduces affinity of omega-conotoxins for recombinant N-type (Cav2.2) calcium channels
J.Biol.Chem., 279, 2004
1YS2
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BU of 1ys2 by Molmil
Burkholderia cepacia lipase complexed with hexylphosphonic acid (S) 2-methyl-3-phenylpropyl ester
Descriptor: CALCIUM ION, HEXYLPHOSPHONIC ACID (S)-2-METHYL-3-PHENYLPROPYL ESTER, Lipase
Authors:Mezzetti, A, Schrag, J.D, Cheong, C.S, Kazlauskas, R.J.
Deposit date:2005-02-06
Release date:2005-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mirror-Image Packing in Enantiomer Discrimination Molecular Basis for the Enantioselectivity of B.cepacia Lipase toward 2-Methyl-3-Phenyl-1-Propanol.
Chem.Biol., 12, 2005
8TBP
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BU of 8tbp by Molmil
HLA-DRB1*15:01 in complex with smith antigen
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HLA class II histocompatibility antigen, DR alpha chain, ...
Authors:Ting, Y.T, Broury, A, Ooi, J.
Deposit date:2023-06-29
Release date:2024-02-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.12621117 Å)
Cite:Smith-specific regulatory T cells halt the progression of lupus nephritis.
Nat Commun, 15, 2024
6WJO
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BU of 6wjo by Molmil
Crystal structure of wild-type Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to tyrosine
Descriptor: Arginine repressor, SODIUM ION, SULFATE ION, ...
Authors:Nascimento, A.F.Z, Hernandez-Gonzalez, J.E, de Morais, M.A.B, Murakami, M.T, Carareto, C.M.A, Arni, R.K, Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
6DST
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BU of 6dst by Molmil
Recombinant melittin
Descriptor: Melittin
Authors:Ramirez, L.M, Pande, J, Shekhtman, A.
Deposit date:2018-06-14
Release date:2019-04-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Helical Structure of Recombinant Melittin.
J Phys Chem B, 123, 2019
1YTP
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BU of 1ytp by Molmil
Solution structure of the C4A/C41A variant of the Nicotiana alata proteinase inhibitor T1
Descriptor: proteinase inhibitor
Authors:Schirra, H.J, Renda, R.R, Anderson, M.A, Craik, D.J.
Deposit date:2005-02-10
Release date:2006-03-21
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:The structure of a disulfide mutant of the Nicotiana alata proteinase inhibitor T1 --- Stabilisation of the reactive site loop is critical for activity
TO BE PUBLISHED
4XIC
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BU of 4xic by Molmil
ANTPHD WITH 15BP di-thioate modified DNA DUPLEX
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C2S)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ...
Authors:White, M.A, Zandarashvili, L, Iwahara, J.
Deposit date:2015-01-06
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate.
Biophys.J., 109, 2015
6AZZ
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BU of 6azz by Molmil
Crystal structure of Pfs25 in complex with the transmission blocking antibody 1190
Descriptor: 1190 antibody, heavy chain, light chain, ...
Authors:Scally, S.W, McLeod, B, Bosch, A, King, C.R, Julien, J.P.
Deposit date:2017-09-13
Release date:2017-11-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular definition of multiple sites of antibody inhibition of malaria transmission-blocking vaccine antigen Pfs25.
Nat Commun, 8, 2017
6R7R
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BU of 6r7r by Molmil
Crystal structure of the glutamate transporter homologue GltTk in complex with D-aspartate
Descriptor: D-ASPARTIC ACID, DECYL-BETA-D-MALTOPYRANOSIDE, DI(HYDROXYETHYL)ETHER, ...
Authors:Arkhipova, V, Guskov, A, Slotboom, D.J.
Deposit date:2019-03-29
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Binding and transport of D-aspartate by the glutamate transporter homolog Glt Tk .
Elife, 8, 2019
6DYF
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BU of 6dyf by Molmil
Cu(II)-bound structure of the engineered cyt cb562 variant, CH3Y
Descriptor: CHLORIDE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Tezcan, F.A, Rittle, J.
Deposit date:2018-07-01
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:An efficient, step-economical strategy for the design of functional metalloproteins.
Nat.Chem., 11, 2019
5IF6
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BU of 5if6 by Molmil
Structure of a computationally designed 17-OHP binder
Descriptor: (9beta)-17-hydroxypregn-4-ene-3,20-dione, OHP9_1c, SODIUM ION
Authors:Stoddard, B.L, Doyle, L.A.
Deposit date:2016-02-25
Release date:2017-03-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Sampling and energy evaluation challenges in ligand binding protein design.
Protein Sci., 26, 2017
6DYH
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BU of 6dyh by Molmil
Vanadyl-bound structure of the engineered cyt cb562 variant, CH3Y
Descriptor: HEME C, Soluble cytochrome b562, VANADIUM ION
Authors:Tezcan, F.A, Rittle, J.
Deposit date:2018-07-01
Release date:2019-04-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:An efficient, step-economical strategy for the design of functional metalloproteins.
Nat.Chem., 11, 2019
7SR0
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BU of 7sr0 by Molmil
Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPET
Descriptor: PHOSPHATE ION, Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH
Authors:Finton, K.A.K, Rupert, P.B.
Deposit date:2021-11-07
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Effects of HLA single chain trimer design on peptide presentation and stability.
Front Immunol, 14, 2023
6ANN
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BU of 6ann by Molmil
Structure of cyclic D-Leu-N-methyl-D-Phe-2-Abz-D-Ala at 0.76 Angstrom
Descriptor: ETHANOL, cyclic DLE-ZAE-BE2-DAL
Authors:Cameron, A.J, Sarojini, V, Squire, C.J.
Deposit date:2017-08-14
Release date:2017-11-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.76 Å)
Cite:Crystal and NMR Structures of a Peptidomimetic beta-Turn That Provides Facile Synthesis of 13-Membered Cyclic Tetrapeptides.
Chem Asian J, 12, 2017
4H7V
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BU of 4h7v by Molmil
MUTB inactive double mutant D200A-D415N in complex with GLUCOSE
Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase, ...
Authors:Lipski, A, Haser, R, Aghajari, N.
Deposit date:2012-09-20
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into product binding in sucrose isomerases from crystal structures of MutB from Rhizobium sp.
To be Published
7SR3
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BU of 7sr3 by Molmil
Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPETTDL
Descriptor: Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera, VHH
Authors:Finton, K.A.K, Rupert, P.B.
Deposit date:2021-11-07
Release date:2022-11-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Effects of HLA single chain trimer design on peptide presentation and stability.
Front Immunol, 14, 2023
1U3B
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BU of 1u3b by Molmil
Auto-inhibition Mechanism of X11s/Mints Family Scaffold Proteins Revealed by the Closed Conformation of the Tandem PDZ Domains
Descriptor: amyloid beta A4 precursor protein-binding, family A, member 1
Authors:Feng, W, Long, J.-F, Chan, L.-N, He, C, Fu, A, Xia, J, Ip, N.Y, Zhang, M.
Deposit date:2004-07-21
Release date:2005-07-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Autoinhibition of X11/Mint scaffold proteins revealed by the closed conformation of the PDZ tandem
Nat.Struct.Mol.Biol., 12, 2005
8DEL
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BU of 8del by Molmil
Trimeric Heme-Free Cytochrome Variant ApoCyt-TriCyt3
Descriptor: MAGNESIUM ION, Soluble cytochrome b562, ZINC ION
Authors:Hoffnagle, A.M, Eng, V.H, Tezcan, F.A.
Deposit date:2022-06-20
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Computationally Guided Redesign of a Heme-free Cytochrome with Native-like Structure and Stability.
Biochemistry, 61, 2022
3IU5
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BU of 3iu5 by Molmil
Crystal structure of the first bromodomain of human poly-bromodomain containing protein 1 (PB1)
Descriptor: Protein polybromo-1
Authors:Filippakopoulos, P, Picaud, S, Keates, T, Ugochukwu, E, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2009-08-30
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
830C
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BU of 830c by Molmil
COLLAGENASE-3 (MMP-13) COMPLEXED TO A SULPHONE-BASED HYDROXAMIC ACID
Descriptor: 4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]-TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE, CALCIUM ION, MMP-13, ...
Authors:Lovejoy, B, Welch, A, Carr, S, Luong, C, Broka, C, Hendricks, R.T, Campbell, J, Walker, K, Martin, R, Van Wart, H, Browner, M.F.
Deposit date:1998-08-06
Release date:1999-08-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors.
Nat.Struct.Biol., 6, 1999
8CZI
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BU of 8czi by Molmil
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2
Descriptor: Scaffolded Spike protein S2' HR1, Spike protein S2' HR2
Authors:Yang, K, Brunger, A.T.
Deposit date:2022-05-24
Release date:2022-09-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.22 Å)
Cite:Nanomolar inhibition of SARS-CoV-2 infection by an unmodified peptide targeting the prehairpin intermediate of the spike protein.
Proc.Natl.Acad.Sci.USA, 119, 2022
5IIZ
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BU of 5iiz by Molmil
Xanthomonas campestris Peroxiredoxin Q - Structure F0
Descriptor: Bacterioferritin comigratory protein, SODIUM ION
Authors:Perkins, A, Parsonage, D, Nelson, K.J, Poole, L.B, Karplus, A.
Deposit date:2016-03-01
Release date:2016-09-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Peroxiredoxin Catalysis at Atomic Resolution.
Structure, 24, 2016

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