Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 88608 件

2WBN
DownloadVisualize
BU of 2wbn by Molmil
Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1
分子名称: TERMINASE LARGE SUBUNIT
著者Smits, C, Chechik, M, Kovalevskiy, O.V, Shevtsov, M.B, Foster, A.W, Alonso, J.C, Antson, A.A.
登録日2009-03-02
公開日2009-03-24
最終更新日2011-10-12
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for the Nuclease Activity of a Bacteriophage Large Terminase.
Embo Rep., 10, 2009
6VUW
DownloadVisualize
BU of 6vuw by Molmil
Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT368
分子名称: (7R)-7-methyl-2-({[(3R)-1-methylpiperidin-3-yl]methyl}sulfanyl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine, GLYCEROL, N-acetyltransferase Eis, ...
著者Punetha, A, Hou, C, Ngo, H.X, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日2020-02-16
公開日2020-06-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis.
Acs Chem.Biol., 15, 2020
7AZT
DownloadVisualize
BU of 7azt by Molmil
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at room temperature
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, RE11660p
著者Cellini, A, Wahlgren, W.Y, Henry, L, Westenhoff, S, Pandey, S.
登録日2020-11-17
公開日2021-08-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol, 77, 2021
2I4T
DownloadVisualize
BU of 2i4t by Molmil
Crystal structure of Purine Nucleoside Phosphorylase from Trichomonas vaginalis with Imm-A
分子名称: 3,4-PYRROLIDINEDIOL,2-(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)-2S,3S,4R,5R, PHOSPHATE ION, Trichomonas vaginalis purine nucleoside phosphorylase
著者Rinaldo-Matthis, A, Schramm, V.L, Almo, S.C.
登録日2006-08-22
公開日2007-06-05
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Inhibition and structure of Trichomonas vaginalis purine nucleoside phosphorylase with picomolar transition state analogues.
Biochemistry, 46, 2007
1JQU
DownloadVisualize
BU of 1jqu by Molmil
Are Carboxy Terminii of Helices Coded by the Local Sequence or by Tertiary Structure Contacts
分子名称: Lysozyme
著者Sagermann, M, Martensson, L.-G, Baase, W.A, Matthews, B.W.
登録日2001-08-08
公開日2002-03-06
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A test of proposed rules for helix capping: Implications for protein design
Protein Sci., 11, 2002
4IBO
DownloadVisualize
BU of 4ibo by Molmil
Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)
分子名称: CHLORIDE ION, Gluconate dehydrogenase, MAGNESIUM ION
著者Vetting, M.W, Bouvier, J.T, Groninger-Poe, F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2012-12-09
公開日2012-12-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)
To be Published
7ZQ8
DownloadVisualize
BU of 7zq8 by Molmil
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=4 VLP)
分子名称: VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR
著者Kingston, N.J, Grehan, K, Snowden, J.S, Alzahrani, J, Ranson, N.A, Rowlands, D.J, Stonehouse, N.J.
登録日2022-04-29
公開日2023-01-18
最終更新日2023-08-09
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献VelcroVax: a "Bolt-On" Vaccine Platform for Glycoprotein Display.
Msphere, 8, 2023
2VXY
DownloadVisualize
BU of 2vxy by Molmil
The structure of FTsZ from Bacillus subtilis at 1.7A resolution
分子名称: CELL DIVISION PROTEIN FTSZ, CITRIC ACID, POTASSIUM ION
著者Barynin, V.V, Baker, P.J, Rice, D.W, Sedelnikova, S.E, Haydon, D.J, Stokes, N.R, Ure, R, Galbraith, G, Bennett, J.M, Brown, D.R, Heal, J.R, Sheridan, J.M, Aiwale, S.T, Chauhan, P.K, Srivastava, A, Taneja, A, Collins, I, Errington, J, Czaplewski, L.G.
登録日2008-07-15
公開日2008-09-30
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献An Inhibitor of Ftsz with Potent and Selective Anti-Staphylococcal Activity.
Science, 321, 2008
6PNU
DownloadVisualize
BU of 6pnu by Molmil
Crystal structure of native DauA
分子名称: 1,2-ETHANEDIOL, Aldehyde dehydrogenase
著者Pluvinage, B, Boraston, A.B.
登録日2019-07-03
公開日2019-10-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies.
Commun Biol, 2, 2019
7ANM
DownloadVisualize
BU of 7anm by Molmil
Nudaurelia capensis omega virus capsid: virus-like particles expressed in Nicotiana benthamiana
分子名称: p70
著者Castells-Graells, R, Ribeiro, J.R.S, Domitrovic, T, Hesketh, E.L, Scarff, C.A, Johnson, J.E, Ranson, N.A, Lawson, D.M, Lomonossoff, G.P.
登録日2020-10-12
公開日2021-08-25
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus.
Commun Biol, 4, 2021
7ZQA
DownloadVisualize
BU of 7zqa by Molmil
VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR (T=3* VLP)
分子名称: VelcroVax tandem HBcAg with SUMO-Affimer inserted at MIR
著者Kingston, N.J, Grehan, K, Snowden, J.S, Alzahrani, J, Ranson, N.A, Rowlands, D.J, Stonehouse, N.J.
登録日2022-04-29
公開日2023-01-18
最終更新日2023-08-09
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献VelcroVax: a "Bolt-On" Vaccine Platform for Glycoprotein Display.
Msphere, 8, 2023
5KCE
DownloadVisualize
BU of 5kce by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with an N-methyl, 2-chlorobenzyl OBHS-N derivative
分子名称: (1S,2R,4S)-N-(2-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-methyl-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide, Estrogen receptor, Nuclear receptor coactivator 2
著者Nwachukwu, J.C, Srinivasan, S, Bruno, N.E, Dharmarajan, V, Goswami, D, Kastrati, I, Novick, S, Nowak, J, Zhou, H.B, Boonmuen, N, Zhao, Y, Min, J, Frasor, J, Katzenellenbogen, B.S, Griffin, P.R, Katzenellenbogen, J.A, Nettles, K.W.
登録日2016-06-06
公開日2016-11-16
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.847 Å)
主引用文献Full antagonism of the estrogen receptor without a prototypical ligand side chain.
Nat. Chem. Biol., 13, 2017
5KCN
DownloadVisualize
BU of 5kcn by Molmil
Crystal Structure of full-length LpoA from Haemophilus influenzae at 1.97 angstrom resolution
分子名称: CHLORIDE ION, Penicillin-binding protein activator LpoA
著者Sathiyamoorthy, K, Saper, M.A.
登録日2016-06-06
公開日2017-09-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.965 Å)
主引用文献Structural analyses of the Haemophilus influenzae peptidoglycan synthase activator LpoA suggest multiple conformations in solution.
J. Biol. Chem., 292, 2017
6VX8
DownloadVisualize
BU of 6vx8 by Molmil
bestrophin-2 Ca2+- unbound state 2 (EGTA only)
分子名称: Bestrophin, CHLORIDE ION
著者Owji, A.P, Zhao, Q, Ji, C, Kittredge, A, Hopiavuori, A, Fu, Z, Ward, N, Clarke, O, Shen, Y, Zhang, Y, Hendrickson, W.A, Yang, T.
登録日2020-02-21
公開日2020-04-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.33 Å)
主引用文献Structural and functional characterization of the bestrophin-2 anion channel.
Nat.Struct.Mol.Biol., 27, 2020
6VX9
DownloadVisualize
BU of 6vx9 by Molmil
bestrophin-2 Ca2+- unbound state 1 (EGTA only)
分子名称: Bestrophin, CHLORIDE ION
著者Owji, A.P, Zhao, Q, Ji, C, Kittredge, A, Hopiavuori, A, Fu, Z, Ward, N, Clarke, O, Shen, Y, Zhang, Y, Hendrickson, W.A, Yang, T.
登録日2020-02-21
公開日2020-04-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.17 Å)
主引用文献Structural and functional characterization of the bestrophin-2 anion channel.
Nat.Struct.Mol.Biol., 27, 2020
2W03
DownloadVisualize
BU of 2w03 by Molmil
Co-complex Structure of Achromobactin Synthetase Protein D (AcsD) with adenosine, sulfate and citrate from Pectobacterium Chrysanthemi
分子名称: ACSD, ADENOSINE, CITRIC ACID, ...
著者Schmelz, S, McMahon, S.A, Kadi, N, Song, L, Oves-Costales, D, Oke, M, Liu, H, Johnson, K.A, Carter, L, White, M.F, Challis, G.L, Naismith, J.H.
登録日2008-08-08
公開日2009-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Acsd Catalyzes Enantioselective Citrate Desymmetrization in Siderophore Biosynthesis
Nat.Chem.Biol., 5, 2009
5KDN
DownloadVisualize
BU of 5kdn by Molmil
ZmpB metallopeptidase from Clostridium perfringens
分子名称: 1,2-ETHANEDIOL, F5/8 type C domain protein, ZINC ION
著者Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
登録日2016-06-08
公開日2017-01-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7ZVO
DownloadVisualize
BU of 7zvo by Molmil
Structure of CBM BT0996-C from Bacteroides thetaiotaomicron
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ALANINE, BETA-MERCAPTOETHANOL, ...
著者Trovao, F, Pinheiro, B.A, Correia, V.G, Palma, A.S, Carvalho, A.L.
登録日2022-05-16
公開日2023-02-08
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The structure of a Bacteroides thetaiotaomicron carbohydrate-binding module provides new insight into the recognition of complex pectic polysaccharides by the human microbiome.
J Struct Biol X, 7, 2023
5K3K
DownloadVisualize
BU of 5k3k by Molmil
Crystal structure of laccase from Thermus thermophilus HB27 (CuSO4, 20 min)
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, ...
著者Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
登録日2016-05-19
公開日2017-05-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.644 Å)
主引用文献Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
2W8V
DownloadVisualize
BU of 2w8v by Molmil
SPT with PLP, N100W
分子名称: PYRIDOXAL-5'-PHOSPHATE, SERINE PALMITOYLTRANSFERASE
著者Raman, M.C.C, Johnson, K.A, Campopiano, D.J, Naismith, J.H.
登録日2009-01-19
公開日2009-01-27
最終更新日2015-11-18
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献The External-Aldimine Form of Serine Palmitoyltranserase; Structural, Kinetic and Spectroscopic Analysis of the Wild-Type Enzyme and Hsan1 Mutant Mimics.
J.Biol.Chem., 284, 2009
6W1B
DownloadVisualize
BU of 6w1b by Molmil
N-terminal domain of mouse surfactant protein B with bound lipid, Y59A/H79A mutant
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Pulmonary surfactant-associated protein B
著者Rapoport, T.A, Bodnar, N.O.
登録日2020-03-04
公開日2020-11-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Mechanism of Lamellar Body Formation by Lung Surfactant Protein B.
Mol.Cell, 81, 2021
3ZJI
DownloadVisualize
BU of 3zji by Molmil
Tyr(61)B10Ala mutation of M.acetivorans protoglobin in complex with cyanide
分子名称: CYANIDE ION, GLYCEROL, PROTOGLOBIN, ...
著者Pesce, A, Tilleman, L, Donne, J, Aste, E, Ascenzi, P, Ciaccio, C, Coletta, M, Moens, L, Viappiani, C, Dewilde, S, Bolognesi, M, Nardini, M.
登録日2013-01-18
公開日2013-06-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and Haem-Distal Site Plasticity in Methanosarcina Acetivorans Protoglobin.
Plos One, 8, 2013
3X3C
DownloadVisualize
BU of 3x3c by Molmil
Crystal structure of the light-driven sodium pump KR2 in neutral state
分子名称: OLEIC ACID, RETINAL, Sodium pumping rhodopsin
著者Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O.
登録日2015-01-18
公開日2015-04-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
5K84
DownloadVisualize
BU of 5k84 by Molmil
Crystal structure of laccase from Thermus thermophilus HB27 (sodium nitrate 10 min)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
著者Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
登録日2016-05-27
公開日2017-06-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
5D4W
DownloadVisualize
BU of 5d4w by Molmil
Crystal structure of Hsp104
分子名称: ADENOSINE-5'-DIPHOSPHATE, Putative heat shock protein
著者Heuck, A, Schitter-Sollner, S, Clausen, T.
登録日2015-08-09
公開日2016-12-07
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Structural basis for the disaggregase activity and regulation of Hsp104.
Elife, 5, 2016

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon