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PDB: 88675 件

6UHL
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Crystal Structure of C148 mGFP-scDNA-1
分子名称: C148 mGFP-scDNA-1, UNKNOWN LIGAND
著者Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
登録日2019-09-27
公開日2020-03-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020
4XJE
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BU of 4xje by Molmil
CRYSTAL STRUCTURE OF ANT(2") IN COMPLEX WITH AMP AND TOBRAMYCIN
分子名称: ADENOSINE MONOPHOSPHATE, AadB, GLYCEROL, ...
著者Rodionov, D, Bassenden, A.V, Berghuis, A.M.
登録日2015-01-08
公開日2016-01-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Revisiting the Catalytic Cycle and Kinetic Mechanism of AminoglycosideO-Nucleotidyltransferase(2′′): A Structural and Kinetic Study.
Acs Chem.Biol., 2020
8B6D
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BU of 8b6d by Molmil
Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070 in complex with UDP
分子名称: 1,2-ETHANEDIOL, GLYCEROL, SODIUM ION, ...
著者Laustsen, J, Kumpf, A, Bento, I.
登録日2022-09-27
公開日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure determination of a highly active UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070
To Be Published
7PFG
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2 minute Fe2+ soaked structure of SynFtn Variant E141A
分子名称: CHLORIDE ION, FE (III) ION, Ferritin, ...
著者Hemmings, A.M, Bradley, J.M.
登録日2021-08-11
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Key carboxylate residues for iron transit through the prokaryotic ferritin Syn Ftn.
Microbiology (Reading, Engl.), 167, 2021
5LLV
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BU of 5llv by Molmil
Crystal structure of DACM F87M/L110M Transthyretin mutant
分子名称: ACETATE ION, CHLORIDE ION, Transthyretin
著者Sala, B.M, Ghadami, S.A, Bemporad, F, Chiti, F, Ricagno, S.
登録日2016-07-28
公開日2017-06-07
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献FRET studies of various conformational states adopted by transthyretin.
Cell. Mol. Life Sci., 74, 2017
8E66
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ETV6 H396Y variant bound to DNA containing the sequence GGAA
分子名称: CACODYLATE ION, Complementary 15 bp strand, GGAA-containing 15 bp DNA, ...
著者Scheu, K, Chan, A.C, Murphy, M.E, McIntosh, L.P.
登録日2022-08-22
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The functional role of histidine within the ETV6 ETS domain
to be published
5IJT
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Human Peroxiredoxin 2 Oxidized (SS)
分子名称: Peroxiredoxin-2, ZINC ION
著者Haynes, A.C, Bolduc, J.A, Lowther, W.T.
登録日2016-03-02
公開日2017-09-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.148 Å)
主引用文献Novel hyperoxidation resistance motifs in 2-Cys peroxiredoxins.
J. Biol. Chem., 293, 2018
6XTA
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BU of 6xta by Molmil
Recombinant human butyrylcholinesterase in complex with (2S)-N-[2-(1-benzylazepan-4-yl)ethyl]-2-(butylamino)-3-(1H-indol-3-yl)propanamide
分子名称: (2~{S})-2-(butylamino)-3-(1~{H}-indol-3-yl)-~{N}-[2-[(4~{R})-1-(phenylmethyl)azepan-4-yl]ethyl]propanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Brazzolotto, X, Nachon, F, Meden, A, Knez, D, Gobec, S.
登録日2020-01-15
公開日2020-10-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-activity relationship study of tryptophan-based butyrylcholinesterase inhibitors.
Eur.J.Med.Chem., 208, 2020
7PF9
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BU of 7pf9 by Molmil
SynFtn Variant E141D
分子名称: CHLORIDE ION, Ferritin, SODIUM ION
著者Hemmings, A.M, Bradley, J.M.
登録日2021-08-11
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Key carboxylate residues for iron transit through the prokaryotic ferritin Syn Ftn.
Microbiology (Reading, Engl.), 167, 2021
7S8G
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BU of 7s8g by Molmil
Structure of anti-LASV Fab 25.10C with FNQI mutation
分子名称: 25.10C-FNQI Fab Heavy Chain, 25.10C-FNQI Fab Light Chain
著者Hastie, K.M, Enriquez, A.S.
登録日2021-09-17
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Delineating the mechanism of anti-Lassa virus GPC-A neutralizing antibodies.
Cell Rep, 39, 2022
6MEF
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BU of 6mef by Molmil
Crystal structure of broadly neutralizing antibody AR3C
分子名称: antibody AR3C Heavy Chain, antibody AR3C Light Chain
著者Flyak, A.I, Bjorkman, P.J.
登録日2018-09-06
公開日2018-11-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献HCV Broadly Neutralizing Antibodies Use a CDRH3 Disulfide Motif to Recognize an E2 Glycoprotein Site that Can Be Targeted for Vaccine Design.
Cell Host Microbe, 24, 2018
5LVR
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BU of 5lvr by Molmil
Crystal structure of human PCAF bromodomain in complex with compound-E (CPD-E)
分子名称: 1,2-ETHANEDIOL, 5-methyl-2-phenyl-1,2,3-triazole-4-carboxamide, DIMETHYL SULFOXIDE, ...
著者Chaikuad, A, Filippakopoulos, P, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Hopkins, A.L, Knapp, S, Structural Genomics Consortium (SGC)
登録日2016-09-14
公開日2016-10-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Discovery of New Bromodomain Scaffolds by Biosensor Fragment Screening.
ACS Med Chem Lett, 7, 2016
7S3R
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BU of 7s3r by Molmil
NMR Solution Structure of hGal(1-12)KK, a solubility-tagged truncation of the human neuropeptide galanin
分子名称: Galanin
著者Kraichely, K.N, Mendoza, E.A, Parnham, S, Giuliano, M.W.
登録日2021-09-08
公開日2022-05-25
最終更新日2022-07-06
実験手法SOLUTION NMR
主引用文献Minimal Increments of Hydrophobic Collapse within the N-Terminus of the Neuropeptide Galanin.
Biochemistry, 61, 2022
6UKS
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BU of 6uks by Molmil
ATPgammaS bound mBcs1
分子名称: MAGNESIUM ION, Mitochondrial chaperone BCS1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
著者Tang, W.K, Borgnia, M.J, Hsu, A.L, Xia, D.
登録日2019-10-05
公開日2020-02-05
最終更新日2020-02-26
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein.
Nat.Struct.Mol.Biol., 27, 2020
8E04
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BU of 8e04 by Molmil
Structure of monomeric LRRK1
分子名称: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
著者Reimer, J.M, Mathea, S, Chatterjee, D, Knapp, S, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
4XBC
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BU of 4xbc by Molmil
1.60 A resolution structure of Norovirus 3CL protease complex with a covalently bound dipeptidyl inhibitor (1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid (Hexagonal Form)
分子名称: (1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-LIKE PROTEASE, TETRAETHYLENE GLYCOL
著者Lovell, S, Battaile, K.P, Mehzabeen, N, Kankanamalage, A.C.G, Kim, Y, Weerawarna, P.M, Uy, R.A.Z, Damalanka, V.C, Mandadapu, S.R, Alliston, K.R, Groutas, W.C, Chang, K.-O.
登録日2014-12-16
公開日2015-03-25
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Guided Design and Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease. Structure-Activity Relationships and Biochemical, X-ray Crystallographic, Cell-Based, and In Vivo Studies.
J.Med.Chem., 58, 2015
8SQ9
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BU of 8sq9 by Molmil
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine, MAGNESIUM ION, Non-structural protein 7, ...
著者Small, G.I, Darst, S.A, Campbell, E.A.
登録日2023-05-04
公開日2023-11-22
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural and functional insights into the enzymatic plasticity of the SARS-CoV-2 NiRAN domain.
Mol.Cell, 83, 2023
6OUD
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BU of 6oud by Molmil
Carbonic Anhydrase IX mimic complexed with benzene sulfonamide MB11-694B
分子名称: 4-{[(2-hydroxyethyl)carbamoyl]amino}benzene-1-sulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Kota, A, McKenna, R.
登録日2019-05-04
公開日2020-05-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.256 Å)
主引用文献Carbonic Anhydrase IX mimic complexed with benzene sulfonamide MB11-694B
To Be Published
5M15
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BU of 5m15 by Molmil
Synthetic nanobody in complex with MBP
分子名称: Maltose-binding periplasmic protein, Synthetic nanobody L2_D09, (a-MBP#3)
著者Zimmermann, I, Egloff, P, Seeger, M.A.
登録日2016-10-07
公開日2017-11-15
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Synthetic single domain antibodies for the conformational trapping of membrane proteins.
Elife, 7, 2018
6MEI
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BU of 6mei by Molmil
Crystal structure of broadly neutralizing antibody HEPC3 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, ...
著者Flyak, A.I, Bjorkman, P.J.
登録日2018-09-06
公開日2018-11-21
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献HCV Broadly Neutralizing Antibodies Use a CDRH3 Disulfide Motif to Recognize an E2 Glycoprotein Site that Can Be Targeted for Vaccine Design.
Cell Host Microbe, 24, 2018
8G5N
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BU of 8g5n by Molmil
Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma
分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ...
著者Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D.
登録日2023-02-13
公開日2024-01-10
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural basis for DNA proofreading.
Nat Commun, 14, 2023
8GJI
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BU of 8gji by Molmil
De novo design of high-affinity protein binders to bioactive helical peptides
分子名称: GCG binder, Glucagon
著者Torres, S.V, Leung, P.J.Y, Bera, A.K, Baker, D, Kang, A.
登録日2023-03-15
公開日2024-01-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献De novo design of high-affinity binders of bioactive helical peptides.
Nature, 626, 2024
8SQK
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BU of 8sqk by Molmil
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
分子名称: 5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosine, MAGNESIUM ION, Non-structural protein 7, ...
著者Small, G.I, Darst, S.A, Campbell, E.A.
登録日2023-05-04
公開日2023-11-22
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Structural and functional insights into the enzymatic plasticity of the SARS-CoV-2 NiRAN domain.
Mol.Cell, 83, 2023
8G5K
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BU of 8g5k by Molmil
Cryo-EM structure of the Wedge Alignment Complex (VIII) of Human Mitochondrial DNA Polymerase Gamma
分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ...
著者Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D.
登録日2023-02-13
公開日2024-01-10
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for DNA proofreading.
Nat Commun, 14, 2023
8G5I
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BU of 8g5i by Molmil
Cryo-EM structure of the Mismatch Sensing Complex (I) of Human Mitochondrial DNA Polymerase Gamma
分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ...
著者Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D.
登録日2023-02-13
公開日2024-01-10
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structural basis for DNA proofreading.
Nat Commun, 14, 2023

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