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PDB: 88675 件

7SSD
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Mid translocation intermediate with EF-G bound with GDP (Structure IV)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Carbone, C.E, Korostelev, A.A.
登録日2021-11-10
公開日2022-02-23
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP.
Nat Commun, 12, 2021
6YQY
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Crystal structure of sTIM11noCys, a de novo designed TIM barrel
分子名称: de novo designed TIM barrel sTIM11noCys
著者Romero-Romero, S, Wiese, G.J, Kordes, S, Shanmugaratnam, S, Fernandez-Velasco, D.A, Hocker, B.
登録日2020-04-18
公開日2021-07-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.876 Å)
主引用文献The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach.
J.Mol.Biol., 433, 2021
5MIJ
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X-ray structure of carboplatin-encapsulated horse spleen apoferritin
分子名称: CADMIUM ION, CHLORIDE ION, Ferritin light chain, ...
著者Pontillo, N, Ferraro, G, Helliwell, J.R, Merlino, A.
登録日2016-11-28
公開日2017-03-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献X-ray Structure of the Carboplatin-Loaded Apo-Ferritin Nanocage.
ACS Med Chem Lett, 8, 2017
6QC7
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Ovine respiratory complex I FRC open class 3
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, Acyl carrier protein, ...
著者Letts, J.A, Sazanov, L.A.
登録日2018-12-27
公開日2019-08-21
最終更新日2019-10-02
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk.
Mol.Cell, 75, 2019
6NBC
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BU of 6nbc by Molmil
human methemoglobin state 1 determined using single-particle cryo-EM at 200 keV
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
著者Herzik Jr, M.A, Wu, M, Lander, G.C.
登録日2018-12-06
公開日2019-03-13
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献High-resolution structure determination of sub-100 kDa complexes using conventional cryo-EM.
Nat Commun, 10, 2019
8DAL
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BU of 8dal by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 4-(benzyloxy)-6-bromo-3-hydroxypicolinonitrile
分子名称: 6-bromo-3-hydroxy-4-oxo-1,4-dihydropyridine-2-carbonitrile, MANGANESE (II) ION, Polymerase acidic protein
著者Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
登録日2022-06-13
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
6W61
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Crystal Structure of the methyltransferase-stimulatory factor complex of NSP16 and NSP10 from SARS CoV-2.
分子名称: 1,2-ETHANEDIOL, 2'-O-methyltransferase, CHLORIDE ION, ...
著者Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-03-15
公開日2020-03-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of nsp10-nsp16 heterodimer from SARS-CoV-2 in complex with S-adenosylmethionine
Biorxiv, 2020
5MNQ
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Cationic trypsin in complex with a derivative of N-amidinopiperidine
分子名称: (2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide, CALCIUM ION, Cationic trypsin, ...
著者Schiebel, J, Ngo, K, Heine, A, Klebe, G.
登録日2016-12-13
公開日2018-01-17
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.337 Å)
主引用文献Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
7Q6M
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Structure of WrbA from Yersinia pseudotuberculosis in P1
分子名称: CHLORIDE ION, NAD(P)H dehydrogenase (quinone)
著者Gabrielsen, M, Beckham, K.S.H, Roe, A.J.
登録日2021-11-08
公開日2022-08-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Crystal structures of WrbA, a spurious target of the salicylidene acylhydrazide inhibitors of type III secretion in Gram-negative pathogens, and verification of improved specificity of next-generation compounds.
Microbiology (Reading, Engl.), 168, 2022
6W3P
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Crystal structure of ligand-binding domain of Campylobacter jejuni chemoreceptor Tlp3 in complex with beta-methylnorleucine
分子名称: CHLORIDE ION, GLYCEROL, Methyl-accepting chemotaxis protein, ...
著者Khan, M.F, Machuca, M.A, Rahman, M.M, Roujeinikova, A.
登録日2020-03-09
公開日2020-05-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.383 Å)
主引用文献Structure-Activity Relationship Study Reveals the Molecular Basis for Specific Sensing of Hydrophobic Amino Acids by theCampylobacter jejuniChemoreceptor Tlp3.
Biomolecules, 10, 2020
8DJY
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BU of 8djy by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one
分子名称: (2M)-6-bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one, MANGANESE (II) ION, Polymerase acidic protein
著者Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
登録日2022-07-01
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8DDE
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BU of 8dde by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 4-(benzyloxy)-6-bromo-2-(1H-tetrazol-5-yl) yridine-3-ol
分子名称: (2M)-6-bromo-3-hydroxy-2-(1H-tetrazol-5-yl)pyridin-4(1H)-one, MANGANESE (II) ION, Polymerase acidic protein
著者Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
登録日2022-06-17
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8U7J
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BU of 8u7j by Molmil
Crystal Structure of Staphylococcus aureus PLP synthase complex
分子名称: GLUTAMINE, PHOSPHATE ION, Pyridoxal 5'-phosphate synthase subunit PdxS, ...
著者Barra, A.L.C, Brognaro, H, Betzel, C, Nascimento, A.S.
登録日2023-09-15
公開日2024-07-24
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Structure and dynamics of the staphylococcal pyridoxal 5-phosphate synthase complex reveal transient interactions at the enzyme interface.
J.Biol.Chem., 300, 2024
8DHN
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BU of 8dhn by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 6-Bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one
分子名称: (2P)-6-bromo-3-hydroxy-2-(5-methyl-1,2,4-oxadiazol-3-yl)pyridin-4(1H)-one, MANGANESE (II) ION, PA endonuclease
著者Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
登録日2022-06-27
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
7ML4
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BU of 7ml4 by Molmil
RNA polymerase II initially transcribing complex (ITC)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
6Y3K
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BU of 6y3k by Molmil
NMR solution structure of the hazelnut allergen Cor a 1.0403
分子名称: Major allergen variant Cor a 1.0403
著者Fuehrer, S, Kamenik, A.S, Zeindl, R, Nothegger, B, Hofer, F, Reider, N, Liedl, K.R, Tollinger, M.
登録日2020-02-18
公開日2021-02-17
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Inverse relation between structural flexibility and IgE reactivity of Cor a 1 hazelnut allergens.
Sci Rep, 11, 2021
7BJV
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Crystal structure of the ligand-binding domains of the heterodimer EcR/USP bound to the synthetic agonist BYI09181
分子名称: DI(HYDROXYETHYL)ETHER, Ecdysone Receptor, L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE, ...
著者Browning, C, McEwen, A.G, Billas, I.M.L.
登録日2021-01-14
公開日2021-04-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Nonsteroidal ecdysone receptor agonists use a water channel for binding to the ecdysone receptor complex EcR/USP.
J Pestic Sci, 46, 2021
6Q81
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Structure of P-glycoprotein(ABCB1) in the post-hydrolytic state
分子名称: ADENOSINE-5'-DIPHOSPHATE, P-glycoprotein (ABCB1)
著者Ford, R.C, Thonghin, N, Collins, R.F, Barbieri, A, Shafi, T, Siebert, A.
登録日2018-12-13
公開日2018-12-26
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Novel features in the structure of P-glycoprotein (ABCB1) in the post-hydrolytic state as determined at 7.9 angstrom resolution.
Bmc Struct.Biol., 18, 2018
6Q8H
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BU of 6q8h by Molmil
Structure of Fucosylated D-antimicrobial peptide SB10 in complex with the Fucose-binding lectin PA-IIL at 1.707 Angstrom resolution
分子名称: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, AMINO GROUP, CALCIUM ION, ...
著者Baeriswyl, S, Stocker, A, Reymond, J.L.
登録日2018-12-14
公開日2019-03-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献X-ray Crystal Structures of Short Antimicrobial Peptides as Pseudomonas aeruginosa Lectin B Complexes.
Acs Chem.Biol., 14, 2019
6YE5
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Structure of ribosomal binding factor A RbfA of Staphylococcus aureus bacterium by NMR
分子名称: Ribosome-binding factor A
著者Blokhin, D.S, Usachev, K.S, Bikmullin, A.G, Nurullina, L, Garaeva, N, Validov, S, Klochkov, V, Aganov, A, Khusainov, I, Yusupov, M.
登録日2020-03-24
公開日2021-03-31
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Structure of ribosomal binding factor A RbfA of Staphylococcus aureus bacterium by NMR
To Be Published
8V10
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Structure of a Saccharomyces cerevisiae Mps1 peptide bound to dwarf Ndc80 Complex
分子名称: Kinetochore protein NDC80, Kinetochore protein SPC24, Kinetochore protein SPC25, ...
著者Zahm, J.A, Harrison, S.C.
登録日2023-11-19
公開日2024-05-15
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献A communication hub for phosphoregulation of kinetochore-microtubule attachment.
Curr.Biol., 34, 2024
6VV5
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Cryo-EM structure of porcine epidemic diarrhea virus (PEDV) spike protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITOLEIC ACID, ...
著者Kirchdoerfer, R.N, Ward, A.B.
登録日2020-02-17
公開日2020-02-26
最終更新日2021-04-14
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure and immune recognition of the porcine epidemic diarrhea virus spike protein.
Structure, 29, 2021
6Q9E
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Complex III2 focused refinement from Ovine respiratory supercomplex I+III2
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, CARDIOLIPIN, Cytochrome b, ...
著者Letts, J.A, Sazanov, L.A.
登録日2018-12-18
公開日2019-08-21
最終更新日2019-10-02
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk.
Mol.Cell, 75, 2019
7T74
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HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV Envelope ApexGT2 gp120, ...
著者Berndsen, Z.T, Ward, A.B.
登録日2021-12-14
公開日2022-09-28
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors.
Immunity, 55, 2022
6O06
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Extracellular factors prime enterovirus particles for uncoating
分子名称: VP1, VP2, VP3
著者Domanska, A, Ruokolainen, V, Pelliccia, M, Laajala, M, Butcher, S.J, Marjomaki, V.S.
登録日2019-02-15
公開日2019-06-12
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Extracellular Albumin and Endosomal Ions Prime Enterovirus Particles for Uncoating That Can Be Prevented by Fatty Acid Saturation.
J.Virol., 93, 2019

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