Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 件

6BGS
DownloadVisualize
BU of 6bgs by Molmil
Caspase-3 Mutant - S150Y
分子名称: Ac-Asp-Glu-Val-Asp-CMK, Caspase-3
著者Thomas, M.E, Grinshpon, R, Swartz, P.D, Clark, A.C.
登録日2017-10-29
公開日2018-02-21
最終更新日2018-04-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Modifications to a common phosphorylation network provide individualized control in caspases.
J. Biol. Chem., 293, 2018
4YQJ
DownloadVisualize
BU of 4yqj by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
分子名称: 4-amino-2-(cyclopentylamino)pyrimidine-5-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
著者Elkins, P.A, Bonnette, W.G, Stuckey, J.A.
登録日2015-03-13
公開日2016-03-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
6BHW
DownloadVisualize
BU of 6bhw by Molmil
B. subtilis SsbA
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Single-stranded DNA-binding protein A
著者Dubiel, K.D, Myers, A.R, Satyshur, K.A, Keck, J.L.
登録日2017-10-31
公開日2018-12-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.208 Å)
主引用文献Structural Mechanisms of Cooperative DNA Binding by Bacterial Single-Stranded DNA-Binding Proteins.
J. Mol. Biol., 431, 2019
6FAB
DownloadVisualize
BU of 6fab by Molmil
THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN
分子名称: IGG1-KAPPA 36-71 FAB (HEAVY CHAIN), IGG1-KAPPA 36-71 FAB (LIGHT CHAIN)
著者Strong, R.K, Rose, D.R, Petsko, G.A, Sharon, J, Margolies, M.N.
登録日1991-01-17
公開日1993-01-15
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Three-dimensional structure of murine anti-p-azophenylarsonate Fab 36-71. 1. X-ray crystallography, site-directed mutagenesis, and modeling of the complex with hapten.
Biochemistry, 30, 1991
6MF6
DownloadVisualize
BU of 6mf6 by Molmil
Crystal structure of budding yeast Cdc5 polo-box domain in complex with the Dbf4 polo-interacting region.
分子名称: Cell cycle serine/threonine-protein kinase CDC5/MSD2, DDK kinase regulatory subunit DBF4
著者Guarne, A, Almawi, A.W.
登録日2018-09-09
公開日2020-02-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Distinct surfaces on Cdc5/PLK Polo-box domain orchestrate combinatorial substrate recognition during cell division.
Sci Rep, 10, 2020
8FAY
DownloadVisualize
BU of 8fay by Molmil
Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)
分子名称: Adenine DNA glycosylase, DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*CP*AP*(NR1)P*GP*TP*CP*T)-3'), ...
著者Trasvina-Arenas, C.H, Lin, W.J, Demir, M, Fisher, A.J, David, S.S, Horvath, M.P.
登録日2022-11-29
公開日2024-05-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)
To Be Published
4YS0
DownloadVisualize
BU of 4ys0 by Molmil
Conformational changes of the clamp of the protein translocation ATPase SecA from Thermotoga maritima
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translocase subunit SecA
著者Chen, Y, Rapoport, T.A.
登録日2015-03-16
公開日2015-06-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.897 Å)
主引用文献Conformational Changes of the Clamp of the Protein Translocation ATPase SecA.
J.Mol.Biol., 427, 2015
4RV7
DownloadVisualize
BU of 4rv7 by Molmil
Characterization of an essential diadenylate cyclase
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Diadenylate cyclase, HEXANE-1,6-DIOL, ...
著者Dickmanns, A, Neumann, P, Ficner, R.
登録日2014-11-25
公開日2015-01-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and Biochemical Analysis of the Essential Diadenylate Cyclase CdaA from Listeria monocytogenes.
J.Biol.Chem., 290, 2015
4YHA
DownloadVisualize
BU of 4yha by Molmil
Crystal structure of the complex of Helicobacter pylori alpha-Carbonic Anhydrase with methazolamide
分子名称: Alpha-carbonic anhydrase, CHLORIDE ION, GLYCEROL, ...
著者Roujeinikova, A, Modak, J.K.
登録日2015-02-27
公開日2015-07-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for the Inhibition of Helicobacter pylori alpha-Carbonic Anhydrase by Sulfonamides.
Plos One, 10, 2015
5HWB
DownloadVisualize
BU of 5hwb by Molmil
Aspergillus fumigatus FKBP12 apo protein in P212121 space group
分子名称: FK506-binding protein 1A, SULFATE ION
著者Tonthat, N.K, Schumacher, M.A.
登録日2016-01-28
公開日2016-09-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.306 Å)
主引用文献Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function.
Mbio, 7, 2016
6FNT
DownloadVisualize
BU of 6fnt by Molmil
Ergothioneine-biosynthetic methyltransferase EgtD in complex with pyrrolidinohistidine
分子名称: Histidine N-alpha-methyltransferase, Pyrrolidinohistidine
著者Vit, A, Blankenfeldt, W, Seebeck, F.P.
登録日2018-02-05
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Inhibition and Regulation of the Ergothioneine Biosynthetic Methyltransferase EgtD.
ACS Chem. Biol., 13, 2018
8U53
DownloadVisualize
BU of 8u53 by Molmil
Mechanically activated ion channel OSCA3.1 in nanodiscs
分子名称: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CSC1-like protein ERD4, PALMITIC ACID, ...
著者Jojoa-Cruz, S, Lee, W.H, Ward, A.B.
登録日2023-09-12
公開日2024-06-05
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structure-guided mutagenesis of OSCAs reveals differential activation to mechanical stimuli.
Elife, 12, 2024
8RT3
DownloadVisualize
BU of 8rt3 by Molmil
Hen Egg White Lysozyme Crystallized with Bioassembler in Space Microgravity Conditions
分子名称: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, CHLORIDE ION, GADOLINIUM ATOM, ...
著者MacCarthy, C, Koudan, E.V, Petrov, S.V, Levin, A.A, Khesuani, Y.D, Borshchevskiy, V.
登録日2024-01-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献Hen Egg White Lysozyme Crystallized with Bioassembler in Space Microgravity Conditions
To Be Published
6FOI
DownloadVisualize
BU of 6foi by Molmil
Human Cys57/156Ala superoxide dismutase-1 (SOD1), as isolated.
分子名称: SULFATE ION, Superoxide dismutase [Cu-Zn], ZINC ION
著者Wright, G.S.A, Sala, F.A, Antonyuk, S.V, Garratt, R.C, Hasnain, S.S.
登録日2018-02-07
公開日2019-01-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Molecular recognition and maturation of SOD1 by its evolutionarily destabilised cognate chaperone hCCS.
Plos Biol., 17, 2019
6LYM
DownloadVisualize
BU of 6lym by Molmil
Crystal structure of D657A mutant of formylglycinamidine synthetase
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
著者Sharma, N, Tanwar, A.S, Anand, R.
登録日2020-02-14
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Mechanism of Coordinated Gating and Signal Transduction in Purine Biosynthetic Enzyme Formylglycinamidine Synthetase.
Acs Catalysis, 12, 2022
4YJX
DownloadVisualize
BU of 4yjx by Molmil
The structure of Agrobacterium tumefaciens ClpS2 bound to L-phenylalaninamide
分子名称: ATP-dependent Clp protease adapter protein ClpS 2, PHENYLALANINE AMIDE, SULFATE ION
著者Stein, B, Grant, R.A, Sauer, R.T, Baker, T.A.
登録日2015-03-03
公開日2016-01-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.547 Å)
主引用文献Structural Basis of an N-Degron Adaptor with More Stringent Specificity.
Structure, 24, 2016
7JUQ
DownloadVisualize
BU of 7juq by Molmil
Crystal Structure of KSR2:MEK1 in complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Dual specificity mitogen-activated protein kinase kinase 1, Kinase suppressor of Ras 2, ...
著者Khan, Z.M, Dar, A.C.
登録日2020-08-20
公開日2020-09-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.22 Å)
主引用文献Structural basis for the action of the drug trametinib at KSR-bound MEK.
Nature, 588, 2020
6BOQ
DownloadVisualize
BU of 6boq by Molmil
Human APE1 substrate complex with an A/A mismatch adjacent the THF
分子名称: 1,2-ETHANEDIOL, 21-mer DNA, DNA-(apurinic or apyrimidinic site) lyase
著者Freudenthal, B.D, Whitaker, A.M, Fairlamb, M.S.
登録日2017-11-20
公開日2018-08-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches.
Acta Crystallogr D Struct Biol, 74, 2018
7JUR
DownloadVisualize
BU of 7jur by Molmil
Crystal Structure of KSR2:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Trametinib
分子名称: Dual specificity mitogen-activated protein kinase kinase 1, Kinase suppressor of Ras 2, MAGNESIUM ION, ...
著者Khan, Z.M, Dar, A.C.
登録日2020-08-20
公開日2020-09-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Structural basis for the action of the drug trametinib at KSR-bound MEK.
Nature, 588, 2020
7JUX
DownloadVisualize
BU of 7jux by Molmil
Crystal Structure of KSR1:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Trametinib
分子名称: Dual specificity mitogen-activated protein kinase kinase 1, Kinase suppressor of Ras 1, MAGNESIUM ION, ...
著者Khan, Z.M, Dar, A.C.
登録日2020-08-20
公開日2020-09-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Structural basis for the action of the drug trametinib at KSR-bound MEK.
Nature, 588, 2020
7XZR
DownloadVisualize
BU of 7xzr by Molmil
Crystal structure of TNIK-AMPPNP-thiopeptide TP15 complex
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION, ...
著者Hamada, K, Vinogradov, A.A, Zhang, Y, Chang, J.S, Nishimura, H, Goto, Y, Onaka, H, Suga, H, Ogata, K, Sengoku, T.
登録日2022-06-03
公開日2022-10-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献De Novo Discovery of Thiopeptide Pseudo-natural Products Acting as Potent and Selective TNIK Kinase Inhibitors.
J.Am.Chem.Soc., 144, 2022
5JCA
DownloadVisualize
BU of 5jca by Molmil
NADP(H) bound NADH-dependent Ferredoxin:NADP Oxidoreductase (NfnI) from Pyrococcus furiosus
分子名称: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Zadvornyy, O.A, Schut, G.J, Nguyen, D.M, Artz, J.H, Tokmina-Lukaszewska, M, Lipscomb, G, Adams, M.W, Peters, J.W.
登録日2016-04-14
公開日2017-04-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mechanistic insights into energy conservation by flavin-based electron bifurcation.
Nat. Chem. Biol., 13, 2017
5D2H
DownloadVisualize
BU of 5d2h by Molmil
4-oxalocrotonate decarboxylase from Pseudomonas putida G7 - complexed with magnesium and alpha-ketoglutarate
分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, 4-oxalocrotonate decarboxylase NahK, ...
著者Guimaraes, S.L, Nagem, R.A.P.
登録日2015-08-05
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.936 Å)
主引用文献Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid.
Biochemistry, 55, 2016
5D2R
DownloadVisualize
BU of 5d2r by Molmil
Inhibitor Bound Cell Shape Determinant Protein Csd4 from Helicobacter pylori
分子名称: (2R,6R)-2-{[(R)-[(3R)-3-(acetylamino)-3-carboxypropyl](hydroxy)phosphoryl]methyl}-6-aminoheptanedioic acid, Conserved hypothetical secreted protein, IODIDE ION, ...
著者Chan, A.C, Murphy, M.E.
登録日2015-08-06
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Bacterial Cell Shape-Determining Inhibitor.
Acs Chem.Biol., 11, 2016
5UZ3
DownloadVisualize
BU of 5uz3 by Molmil
Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3')
著者Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L.
登録日2017-02-24
公開日2017-05-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Nucleic Acids Res., 46, 2018

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon