Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 件

6REK
DownloadVisualize
BU of 6rek by Molmil
Crystal structure of Pizza6-SH with Cu2+
分子名称: COPPER (II) ION, GLYCEROL, Pizza6-SH
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
5AB8
DownloadVisualize
BU of 5ab8 by Molmil
High resolution X-ray structure of the N-terminal truncated form (residues 1-11) of Mycobacterium tuberculosis HbN
分子名称: ACETATE ION, FORMIC ACID, GLYCEROL, ...
著者Pesce, A, Bustamante, J.P, Bidon-Chanal, A, Boechi, L, Estrin, D.A, Luque, F.J, Sebilo, A, Guertin, M, Bolognesi, M, Ascenzi, P, Nardini, M.
登録日2015-08-04
公開日2015-11-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献The N-Terminal Pre-A Region of Mycobacterium Tuberculosis 2/2Hbn Promotes No-Dioxygenase Activity.
FEBS J., 283, 2016
6R7O
DownloadVisualize
BU of 6r7o by Molmil
Crystal structure of the central region of human cohesin subunit STAG1
分子名称: Cohesin subunit SA-1
著者Newman, J.A, katis, V.L, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
登録日2019-03-29
公開日2019-04-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献STAG1 vulnerabilities for exploiting cohesin synthetic lethality in STAG2-deficient cancers.
Life Sci Alliance, 3, 2020
4TKP
DownloadVisualize
BU of 4tkp by Molmil
Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor
分子名称: SULFATE ION, Tripartite motif-containing protein 5, Ubiquitin-conjugating enzyme E2 N, ...
著者Johnson, R, Taylor, A.B, Hart, P.J, Ivanov, D.N.
登録日2014-05-27
公開日2015-07-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献RING Dimerization Links Higher-Order Assembly of TRIM5 alpha to Synthesis of K63-Linked Polyubiquitin.
Cell Rep, 12, 2015
6HKN
DownloadVisualize
BU of 6hkn by Molmil
Crystal structure of Compound 35 with ERK5
分子名称: Mitogen-activated protein kinase 7, [2-azanyl-4-(trifluoromethyloxy)phenyl]-[4-(7-methoxyquinazolin-4-yl)piperidin-1-yl]methanone
著者Nguyen, D, Lemos, C, Wortmann, L, Eis, K, Holton, S.J, Boemer, U, Lechner, C, Prechtl, S, Suelze, D, Siegel, F, Prinz, F, Lesche, R, Nicke, B, Mumberg, D, Bauser, M, Haegebarth, A.
登録日2018-09-07
公開日2019-02-27
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Discovery and Characterization of the Potent and Highly Selective (Piperidin-4-yl)pyrido[3,2- d]pyrimidine Based in Vitro Probe BAY-885 for the Kinase ERK5.
J. Med. Chem., 62, 2019
6B7P
DownloadVisualize
BU of 6b7p by Molmil
Crystal structure of Legionella effector sdeD (lpg2509)
分子名称: SdeD
著者Mao, Y, Akturk, A, Wasilko, J.
登録日2017-10-04
公開日2018-04-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Mechanism of phosphoribosyl-ubiquitination mediated by a single Legionella effector.
Nature, 557, 2018
6HKS
DownloadVisualize
BU of 6hks by Molmil
Crystal structure of the PTPN3 PDZ domain bound to the HPV16 E6 oncoprotein C-terminal peptide
分子名称: IODIDE ION, Protein E6, Tyrosine-protein phosphatase non-receptor type 3
著者Genera, M, Haouz, A, Caillet-Saguy, C.
登録日2018-09-07
公開日2019-05-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1944108 Å)
主引用文献Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein.
Sci Rep, 9, 2019
5HMA
DownloadVisualize
BU of 5hma by Molmil
Crystal structure of MamO protease domain from Magnetospirillum magneticum (Ni bound form)
分子名称: CHLORIDE ION, NICKEL (II) ION, Trypsin-like serine protease, ...
著者Hershey, D.M, Ren, X, Hurley, J.H, Komeili, A.
登録日2016-01-15
公開日2016-02-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria.
Plos Biol., 14, 2016
6FAW
DownloadVisualize
BU of 6faw by Molmil
Crystal structure of C-terminal modified Tau peptide-hybrid 4.2c-I with 14-3-3sigma
分子名称: (2~{R})-2-[(~{R})-[2-(2-methoxyethoxy)phenyl]-phenyl-methyl]pyrrolidine, 14-3-3 protein sigma, ACE-ARG-THR-PRO-SEP-LEU-PRO-GLY, ...
著者Andrei, S.A, Meijer, F.A, Ottmann, C, Milroy, L.G.
登録日2017-12-18
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Inhibition of 14-3-3/Tau by Hybrid Small-Molecule Peptides Operating via Two Different Binding Modes.
ACS Chem Neurosci, 9, 2018
6EVU
DownloadVisualize
BU of 6evu by Molmil
Adhesin domain of PrgB from Enterococcus faecalis
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, PrgB
著者Schmitt, A, Berntsson, R.P.A.
登録日2017-11-02
公開日2018-05-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.598 Å)
主引用文献PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction.
Mol. Microbiol., 109, 2018
6VB6
DownloadVisualize
BU of 6vb6 by Molmil
HLA-B*15:02 complexed with a synthetic peptide
分子名称: ACETATE ION, Beta-2-microglobulin, GLYCEROL, ...
著者Schutte, R.J, Li, D, Ostrov, D.A.
登録日2019-12-18
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献HLA-B*15:02 complexed with a synthetic peptide
To Be Published
5L97
DownloadVisualize
BU of 5l97 by Molmil
Crystal Structure of BAZ2B bromodomain in complex with 3-amino-2-methylpyridine derivative 3
分子名称: 2-methyl-~{N}-[(2~{S})-2-methylsulfonylcyclopentyl]pyridin-3-amine, Bromodomain adjacent to zinc finger domain protein 2B
著者Lolli, G, Marchand, J.-R, Caflisch, A.
登録日2016-06-09
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Derivatives of 3-Amino-2-methylpyridine as BAZ2B Bromodomain Ligands: In Silico Discovery and in Crystallo Validation.
J. Med. Chem., 59, 2016
1L8V
DownloadVisualize
BU of 1l8v by Molmil
Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia
分子名称: MAGNESIUM ION, P4-P6 RNA ribozyme domain
著者Battle, D.J, Doudna, J.A.
登録日2002-03-21
公開日2002-08-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Specificity of RNA-RNA Helix Recognition
Proc.Natl.Acad.Sci.USA, 99, 2002
5L9D
DownloadVisualize
BU of 5l9d by Molmil
AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSYLATED, CRYSTAL FORM I, parsimonious model
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, DI(HYDROXYETHYL)ETHER, ...
著者Rupp, B, Naschberger, A.
登録日2016-06-10
公開日2016-08-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling.
Acta Crystallogr D Struct Biol, 72, 2016
8GY7
DownloadVisualize
BU of 8gy7 by Molmil
Cryo-EM structure of ACTH-bound melanocortin-2 receptor in complex with MRAP1 and Gs protein
分子名称: CALCIUM ION, Corticotropin, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Luo, P, Feng, W.B, Ma, S.S, Dai, A.T, Yuan, Q.N, Wu, K, Yang, D.H, Wang, M.W, Xu, H.E, Jiang, Y.
登録日2022-09-21
公開日2023-01-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of signaling regulation of the human melanocortin-2 receptor by MRAP1.
Cell Res., 33, 2023
6HN0
DownloadVisualize
BU of 6hn0 by Molmil
Complex of Ovine Serum Albumin with diclofenac
分子名称: (2S)-2-hydroxybutanedioic acid, 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID, ACETATE ION, ...
著者Talaj, J.A, Bujacz, A, Bujacz, G.
登録日2018-09-13
公開日2019-10-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural Investigation of Diclofenac Binding to Ovine, Caprine, and Leporine Serum Albumins.
Int J Mol Sci, 24, 2023
4TRY
DownloadVisualize
BU of 4try by Molmil
Structure of BACE1 complex with a HEA-type inhibitor
分子名称: Beta-secretase 1, GLU-ILE-TIH-THC-NVA
著者Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日2014-06-18
公開日2015-07-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structure of BACE1 complex with an anti-HMC-type inhibitor
to be published
6R73
DownloadVisualize
BU of 6r73 by Molmil
Structure of IMP-13 metallo-beta-lactamase complexed with hydrolysed meropenem
分子名称: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, Beta-lactamase, ZINC ION
著者Softley, C.A, Zak, K, Kolonko, M, Sattler, M, Popowicz, G.
登録日2019-03-28
公開日2020-03-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and Molecular Recognition Mechanism of IMP-13 Metallo-beta-Lactamase.
Antimicrob.Agents Chemother., 64, 2020
5T6L
DownloadVisualize
BU of 5t6l by Molmil
Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2
分子名称: 10E8 EPITOPE SCAFFOLD T117V2, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Antibody 10E8 FAB HEAVY CHAIN, ...
著者Irimia, A, Wilson, I.A.
登録日2016-09-01
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design.
PLoS Pathog., 13, 2017
8BQK
DownloadVisualize
BU of 8bqk by Molmil
W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 22 min
分子名称: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ...
著者Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
登録日2022-11-21
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.587 Å)
主引用文献Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation.
Int J Mol Sci, 24, 2022
4TU6
DownloadVisualize
BU of 4tu6 by Molmil
Crystal structure of apo ATAD2A bromodomain with N1064 alternate conformation
分子名称: ATPase family AAA domain-containing protein 2, SULFATE ION
著者Poncet-Montange, G, Zhan, Y, Bardenhagen, J, Petrocchi, A, Leo, E, Shi, X, Lee, G, Leonard, P, Geck Do, M, Cardozo, M, Palmer, W, Andersen, J, Jones, P, Ladbury, J.
登録日2014-06-23
公開日2014-12-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Observed bromodomain flexibility reveals histone peptide- and small molecule ligand-compatible forms of ATAD2.
Biochem.J., 466, 2015
8BQJ
DownloadVisualize
BU of 8bqj by Molmil
W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 5 min
分子名称: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ...
著者Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
登録日2022-11-21
公開日2023-01-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.107 Å)
主引用文献Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation.
Int J Mol Sci, 24, 2022
6SBL
DownloadVisualize
BU of 6sbl by Molmil
Human Carbonic Anhydrase II in complex with 4-hexylbenzenesulfonamide
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 4-hexylbenzenesulfonamide, CITRATE ANION, ...
著者Gloeckner, S, Ngo, K, Heine, A, Klebe, G.
登録日2019-07-21
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.94 Å)
主引用文献Human Carbonic Anhydrase II in complex with 4-hexylbenzenesulfonamide
To Be Published
6HPH
DownloadVisualize
BU of 6hph by Molmil
Crystal structure of human Pif1 helicase in complex with AMP-PNP
分子名称: ATP-dependent DNA helicase PIF1, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Levdikov, V.M, Dehghani-Tafti, S, Bax, B.D, Sanders, C.M, Antson, A.A.
登録日2018-09-20
公開日2019-01-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase.
Nucleic Acids Res., 47, 2019
4RK6
DownloadVisualize
BU of 4rk6 by Molmil
Crystal structure of LacI family transcriptional regulator CCPA from Weissella paramesenteroides, Target EFI-512926, with bound glucose
分子名称: Glucose-resistance amylase regulator, alpha-D-glucopyranose
著者Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-10-11
公開日2014-10-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of transcriptional regulator CCPA from Weissella paramesenteroides, Target EFI-512926
To be Published

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon